Wall clock time and date at job start Sat Apr 11 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.87376 * 2 1 4 4 C 1.54322 * 110.01110 * 238.89069 * 2 1 3 5 5 H 1.08993 * 110.72254 * 336.86519 * 4 2 1 6 6 N 1.46507 * 110.71583 * 99.95714 * 4 2 1 7 7 C 1.34771 * 119.99844 * 205.00128 * 6 4 2 8 8 O 1.21283 * 120.00310 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99942 * 180.02562 * 7 6 4 10 10 C 1.52999 * 109.47319 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47390 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.32641 * 55.79838 * 11 10 9 13 13 C 1.54472 * 110.37197 * 178.16880 * 11 10 9 14 14 C 1.54509 * 104.06312 * 142.81244 * 13 11 10 15 15 C 1.54476 * 104.06117 * 359.97438 * 14 13 11 16 16 H 1.09000 * 110.37348 * 94.85173 * 15 14 13 17 17 C 1.50702 * 110.46478 * 217.14173 * 15 14 13 18 18 N 1.34774 * 120.00157 * 291.88821 * 17 15 14 19 19 O 1.21287 * 120.00091 * 111.88787 * 17 15 14 20 20 O 1.44420 * 110.37065 * 293.54973 * 11 10 9 21 21 C 1.55151 * 102.94436 * 218.31988 * 4 2 1 22 22 C 1.54690 * 101.68017 * 35.33812 * 21 4 2 23 23 N 1.47026 * 109.87990 * 121.01172 * 2 1 3 24 24 C 1.36945 * 125.64697 * 298.47419 * 23 2 1 25 25 H 1.07997 * 119.99756 * 0.02562 * 24 23 2 26 26 C 1.38805 * 119.99878 * 179.97438 * 24 23 2 27 27 N 1.31624 * 120.00257 * 0.02562 * 26 24 23 28 28 Si 1.86803 * 119.99929 * 179.97438 * 26 24 23 29 29 H 1.48496 * 109.47187 * 179.97438 * 28 26 24 30 30 H 1.48494 * 109.47141 * 300.00154 * 28 26 24 31 31 H 1.48498 * 109.47018 * 60.00200 * 28 26 24 32 32 H 1.08999 * 109.47372 * 300.44396 * 1 2 3 33 33 H 1.09001 * 109.47047 * 60.44373 * 1 2 3 34 34 H 1.08999 * 109.47685 * 180.44366 * 1 2 3 35 35 H 0.96999 * 119.99904 * 24.99871 * 6 4 2 36 36 H 1.09002 * 109.46765 * 299.99898 * 9 7 6 37 37 H 1.08998 * 109.46908 * 59.99465 * 9 7 6 38 38 H 1.08994 * 109.47232 * 300.00478 * 10 9 7 39 39 H 1.09008 * 109.46787 * 60.00040 * 10 9 7 40 40 H 1.09007 * 110.51076 * 261.45808 * 13 11 10 41 41 H 1.09000 * 110.51382 * 24.16353 * 13 11 10 42 42 H 1.08999 * 110.51338 * 241.35192 * 14 13 11 43 43 H 1.09006 * 110.62774 * 118.70125 * 14 13 11 44 44 H 0.97003 * 120.00155 * 0.02562 * 18 17 15 45 45 H 0.97001 * 119.99936 * 179.97438 * 18 17 15 46 46 H 1.08994 * 111.00801 * 153.58000 * 21 4 2 47 47 H 1.09007 * 111.00547 * 277.42985 * 21 4 2 48 48 H 1.08993 * 110.39830 * 204.36603 * 22 21 4 49 49 H 1.09004 * 110.23623 * 82.10689 * 22 21 4 50 50 H 0.97001 * 119.99885 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0581 -0.7492 -1.2415 5 1 1.3092 -1.4451 -1.6195 6 7 2.4581 0.1967 -2.2864 7 6 2.4633 -0.1885 -3.5779 8 8 2.1373 -1.3182 -3.8751 9 6 2.8753 0.7843 -4.6526 10 6 2.7941 0.0998 -6.0185 11 6 3.2118 1.0876 -7.1097 12 1 4.2059 1.4834 -6.9018 13 6 3.1814 0.4037 -8.4944 14 6 2.6660 1.5061 -9.4464 15 6 2.4453 2.7255 -8.5241 16 1 3.3222 3.3729 -8.5347 17 6 1.2215 3.4944 -8.9508 18 7 1.2192 4.1617 -10.1217 19 8 0.2385 3.5126 -8.2406 20 8 2.2528 2.1630 -7.2081 21 6 3.2917 -1.5109 -0.6891 22 6 2.8221 -1.8731 0.7396 23 7 2.0299 -0.7124 1.1850 24 6 1.8024 -0.3536 2.4869 25 1 1.2095 0.5210 2.7102 26 6 2.3329 -1.1147 3.5194 27 7 3.0551 -2.1809 3.2472 28 14 2.0231 -0.6249 5.2952 29 1 2.6924 -1.5938 6.1999 30 1 2.5678 0.7354 5.5358 31 1 0.5622 -0.6274 5.5617 32 1 -0.3634 0.5207 0.8859 33 1 -0.3633 0.5069 -0.8939 34 1 -0.3634 -1.0276 0.0080 35 1 2.7191 1.1001 -2.0486 36 1 2.2082 1.6463 -4.6375 37 1 3.8985 1.1136 -4.4718 38 1 3.4613 -0.7620 -6.0333 39 1 1.7709 -0.2297 -6.1995 40 1 4.1825 0.0853 -8.7852 41 1 2.4971 -0.4447 -8.4865 42 1 1.7268 1.2028 -9.9092 43 1 3.4105 1.7336 -10.2094 44 1 2.0052 4.1469 -10.6900 45 1 0.4313 4.6563 -10.3966 46 1 3.4920 -2.4076 -1.2755 47 1 4.1681 -0.8636 -0.6563 48 1 3.6801 -2.0210 1.3954 49 1 2.2020 -2.7693 0.7168 50 1 3.4261 -2.7125 3.9687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479713121.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:42 Heat of formation + Delta-G solvation = -105.004969 kcal Electronic energy + Delta-G solvation = -29525.515757 eV Core-core repulsion = 25359.885709 eV Total energy + Delta-G solvation = -4165.630048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.70251 -39.63732 -38.74628 -37.51798 -34.29209 -33.95040 -33.65744 -32.43982 -31.94307 -30.34665 -29.47841 -28.39847 -25.74236 -24.30162 -23.93648 -22.60745 -21.42135 -20.93421 -20.36884 -20.06816 -19.42390 -18.16007 -17.37882 -17.08680 -16.75331 -16.51293 -16.08819 -15.70765 -15.16116 -14.99282 -14.73371 -14.64278 -14.15122 -13.94337 -13.76829 -13.56196 -13.34089 -13.08137 -12.69720 -12.35319 -12.24037 -12.09788 -11.95543 -11.86180 -11.50435 -11.34847 -11.24561 -11.10649 -11.01284 -10.81471 -10.78747 -10.50279 -10.42787 -10.35612 -10.18383 -10.09941 -10.03920 -9.70228 -9.57969 -9.44895 -8.63678 -8.51731 -6.84031 -5.62605 -3.05099 2.15061 2.68377 2.92015 3.41529 3.43611 3.47012 3.48828 3.61454 4.01772 4.21360 4.34811 4.47066 4.51759 4.64400 4.75442 4.79998 4.95258 5.12260 5.16589 5.27110 5.30400 5.40151 5.43867 5.46087 5.60461 5.60906 5.65276 5.68641 5.87077 5.89746 6.09769 6.18288 6.24447 6.31225 6.38462 6.41388 6.42565 6.60359 6.67870 6.76453 6.81783 6.93863 7.18376 7.55563 7.65391 7.79849 7.84108 7.88412 8.37547 8.53308 9.23696 9.84620 10.48969 11.40831 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025534 B = 0.001861 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.302972 B =15043.456458 C =15728.208743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.154 3.846 3 H 0.035 0.965 4 C 0.134 3.866 5 H 0.093 0.907 6 N -0.717 5.717 7 C 0.511 3.489 8 O -0.548 6.548 9 C -0.140 4.140 10 C -0.095 4.095 11 C 0.071 3.929 12 H 0.075 0.925 13 C -0.149 4.149 14 C -0.144 4.144 15 C 0.056 3.944 16 H 0.095 0.905 17 C 0.521 3.479 18 N -0.854 5.854 19 O -0.517 6.517 20 O -0.338 6.338 21 C -0.152 4.152 22 C 0.153 3.847 23 N -0.595 5.595 24 C -0.219 4.219 25 H 0.077 0.923 26 C -0.011 4.011 27 N -0.922 5.922 28 Si 0.914 3.086 29 H -0.290 1.290 30 H -0.285 1.285 31 H -0.286 1.286 32 H 0.053 0.947 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.398 0.602 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.401 0.599 45 H 0.405 0.595 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.108 0.892 49 H 0.014 0.986 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 10.858 -29.982 32.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.046 3.954 3 H 0.053 0.947 4 C 0.030 3.970 5 H 0.111 0.889 6 N -0.367 5.367 7 C 0.298 3.702 8 O -0.426 6.426 9 C -0.180 4.180 10 C -0.133 4.133 11 C 0.014 3.986 12 H 0.093 0.907 13 C -0.187 4.187 14 C -0.182 4.182 15 C -0.006 4.006 16 H 0.112 0.888 17 C 0.304 3.696 18 N -0.420 5.420 19 O -0.390 6.390 20 O -0.256 6.256 21 C -0.192 4.192 22 C 0.028 3.972 23 N -0.320 5.320 24 C -0.348 4.348 25 H 0.095 0.905 26 C -0.207 4.207 27 N -0.570 5.570 28 Si 0.745 3.255 29 H -0.216 1.216 30 H -0.212 1.212 31 H -0.213 1.213 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.232 0.768 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.229 0.771 45 H 0.237 0.763 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.126 0.874 49 H 0.032 0.968 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.316 9.905 -29.157 30.972 hybrid contribution 0.128 0.897 0.466 1.019 sum 3.444 10.802 -28.691 30.850 Atomic orbital electron populations 1.22229 0.97890 1.01363 0.99955 1.21006 0.92612 0.94784 0.86979 0.94725 1.22129 0.97538 0.90909 0.86465 0.88940 1.46099 1.68212 1.16088 1.06310 1.20613 0.77413 0.88677 0.83515 1.90681 1.48458 1.20995 1.82427 1.21641 1.03585 0.99185 0.93582 1.21395 1.04159 0.96582 0.91177 1.23194 0.92617 0.87479 0.95329 0.90694 1.22992 1.02776 0.98866 0.94087 1.22905 1.02803 0.94197 0.98293 1.22803 0.95865 0.95978 0.85968 0.88768 1.20286 0.89131 0.78988 0.81219 1.43749 1.20806 1.55039 1.22447 1.90817 1.34978 1.60620 1.52617 1.89314 1.58285 1.48466 1.29552 1.23350 0.96817 0.99308 0.99736 1.21891 0.97255 0.88475 0.89562 1.44484 1.58891 1.28613 1.00060 1.18982 1.27017 1.08194 0.80566 0.90526 1.24791 1.00446 0.97423 0.98032 1.69797 1.39045 1.17952 1.30209 0.86155 0.77639 0.77385 0.84321 1.21612 1.21210 1.21253 0.92743 0.94291 0.92990 0.76806 0.88267 0.89139 0.89520 0.90063 0.89855 0.89776 0.90181 0.89594 0.77076 0.76331 0.92093 0.92085 0.87428 0.96828 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.15 37.16 0.34 -2.69 16 2 C 0.15 3.21 3.47 -66.95 -0.23 2.97 16 3 H 0.04 0.70 7.72 -51.93 -0.40 0.30 16 4 C 0.13 2.54 2.85 -66.10 -0.19 2.35 16 5 H 0.09 1.91 7.26 -51.93 -0.38 1.53 16 6 N -0.72 -10.94 5.18 -52.03 -0.27 -11.21 16 7 C 0.51 7.73 7.83 -10.99 -0.09 7.64 16 8 O -0.55 -10.33 15.63 5.56 0.09 -10.24 16 9 C -0.14 -1.52 5.62 -27.88 -0.16 -1.67 16 10 C -0.10 -0.97 4.14 -26.73 -0.11 -1.09 16 11 C 0.07 0.57 3.28 -25.96 -0.09 0.48 16 12 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 13 C -0.15 -0.88 6.63 -25.17 -0.17 -1.05 16 14 C -0.14 -0.68 6.62 -25.16 -0.17 -0.85 16 15 C 0.06 0.39 3.70 -27.11 -0.10 0.29 16 16 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 17 C 0.52 4.50 7.35 -10.99 -0.08 4.42 16 18 N -0.85 -3.19 8.87 31.22 0.28 -2.91 16 19 O -0.52 -7.44 17.39 -13.62 -0.24 -7.68 16 20 O -0.34 -3.58 10.26 -54.41 -0.56 -4.14 16 21 C -0.15 -3.09 6.76 -24.70 -0.17 -3.26 16 22 C 0.15 3.80 5.87 -2.65 -0.02 3.79 16 23 N -0.60 -15.12 3.13 -162.71 -0.51 -15.63 16 24 C -0.22 -6.05 9.87 -15.06 -0.15 -6.20 16 25 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 26 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 27 N -0.92 -26.94 10.09 55.49 0.56 -26.38 16 28 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 31 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 32 H 0.05 1.09 8.02 -51.93 -0.42 0.67 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.40 5.09 8.37 -40.82 -0.34 4.75 16 36 H 0.10 1.08 7.91 -51.93 -0.41 0.67 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 39 H 0.08 1.00 8.10 -51.92 -0.42 0.58 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 42 H 0.08 0.44 7.87 -51.93 -0.41 0.03 16 43 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 44 H 0.40 0.09 8.83 -40.82 -0.36 -0.27 16 45 H 0.41 1.27 8.93 -40.82 -0.36 0.90 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 48 H 0.11 2.97 5.89 -51.93 -0.31 2.66 16 49 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 402.47 15.07 6.07 6.07 Total: -1.00 -37.05 402.47 -9.48 -46.53 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.41 Total: 3.74 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -1.46 Total: 4.72 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.06 Total: -56.13 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.71 Total: -22.06 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.05 -9.48 -46.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479713121.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.480 kcal (2) G-P(sol) polarization free energy of solvation -37.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds