Wall clock time and date at job start Sat Apr 11 2020 05:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.87376 * 2 1 4 4 C 1.54322 * 110.01110 * 238.89069 * 2 1 3 5 5 H 1.08993 * 110.72254 * 336.86519 * 4 2 1 6 6 N 1.46507 * 110.71583 * 99.95714 * 4 2 1 7 7 C 1.34771 * 119.99844 * 205.00128 * 6 4 2 8 8 O 1.21283 * 120.00310 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99942 * 180.02562 * 7 6 4 10 10 C 1.52999 * 109.47319 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47390 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.32641 * 55.79838 * 11 10 9 13 13 C 1.54472 * 110.37197 * 178.16880 * 11 10 9 14 14 C 1.54509 * 104.06312 * 142.81244 * 13 11 10 15 15 C 1.54476 * 104.06117 * 359.97438 * 14 13 11 16 16 H 1.09000 * 110.37348 * 94.85173 * 15 14 13 17 17 C 1.50702 * 110.46478 * 217.14173 * 15 14 13 18 18 N 1.34774 * 120.00157 * 291.88821 * 17 15 14 19 19 O 1.21287 * 120.00091 * 111.88787 * 17 15 14 20 20 O 1.44420 * 110.37065 * 293.54973 * 11 10 9 21 21 C 1.55151 * 102.94436 * 218.31988 * 4 2 1 22 22 C 1.54690 * 101.68017 * 35.33812 * 21 4 2 23 23 N 1.47026 * 109.87990 * 121.01172 * 2 1 3 24 24 C 1.36945 * 125.64697 * 298.47419 * 23 2 1 25 25 H 1.07997 * 119.99756 * 0.02562 * 24 23 2 26 26 C 1.38805 * 119.99878 * 179.97438 * 24 23 2 27 27 N 1.31624 * 120.00257 * 0.02562 * 26 24 23 28 28 Si 1.86803 * 119.99929 * 179.97438 * 26 24 23 29 29 H 1.48496 * 109.47187 * 179.97438 * 28 26 24 30 30 H 1.48494 * 109.47141 * 300.00154 * 28 26 24 31 31 H 1.48498 * 109.47018 * 60.00200 * 28 26 24 32 32 H 1.08999 * 109.47372 * 300.44396 * 1 2 3 33 33 H 1.09001 * 109.47047 * 60.44373 * 1 2 3 34 34 H 1.08999 * 109.47685 * 180.44366 * 1 2 3 35 35 H 0.96999 * 119.99904 * 24.99871 * 6 4 2 36 36 H 1.09002 * 109.46765 * 299.99898 * 9 7 6 37 37 H 1.08998 * 109.46908 * 59.99465 * 9 7 6 38 38 H 1.08994 * 109.47232 * 300.00478 * 10 9 7 39 39 H 1.09008 * 109.46787 * 60.00040 * 10 9 7 40 40 H 1.09007 * 110.51076 * 261.45808 * 13 11 10 41 41 H 1.09000 * 110.51382 * 24.16353 * 13 11 10 42 42 H 1.08999 * 110.51338 * 241.35192 * 14 13 11 43 43 H 1.09006 * 110.62774 * 118.70125 * 14 13 11 44 44 H 0.97003 * 120.00155 * 0.02562 * 18 17 15 45 45 H 0.97001 * 119.99936 * 179.97438 * 18 17 15 46 46 H 1.08994 * 111.00801 * 153.58000 * 21 4 2 47 47 H 1.09007 * 111.00547 * 277.42985 * 21 4 2 48 48 H 1.08993 * 110.39830 * 204.36603 * 22 21 4 49 49 H 1.09004 * 110.23623 * 82.10689 * 22 21 4 50 50 H 0.97001 * 119.99885 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0581 -0.7492 -1.2415 5 1 1.3092 -1.4451 -1.6195 6 7 2.4581 0.1967 -2.2864 7 6 2.4633 -0.1885 -3.5779 8 8 2.1373 -1.3182 -3.8751 9 6 2.8753 0.7843 -4.6526 10 6 2.7941 0.0998 -6.0185 11 6 3.2118 1.0876 -7.1097 12 1 4.2059 1.4834 -6.9018 13 6 3.1814 0.4037 -8.4944 14 6 2.6660 1.5061 -9.4464 15 6 2.4453 2.7255 -8.5241 16 1 3.3222 3.3729 -8.5347 17 6 1.2215 3.4944 -8.9508 18 7 1.2192 4.1617 -10.1217 19 8 0.2385 3.5126 -8.2406 20 8 2.2528 2.1630 -7.2081 21 6 3.2917 -1.5109 -0.6891 22 6 2.8221 -1.8731 0.7396 23 7 2.0299 -0.7124 1.1850 24 6 1.8024 -0.3536 2.4869 25 1 1.2095 0.5210 2.7102 26 6 2.3329 -1.1147 3.5194 27 7 3.0551 -2.1809 3.2472 28 14 2.0231 -0.6249 5.2952 29 1 2.6924 -1.5938 6.1999 30 1 2.5678 0.7354 5.5358 31 1 0.5622 -0.6274 5.5617 32 1 -0.3634 0.5207 0.8859 33 1 -0.3633 0.5069 -0.8939 34 1 -0.3634 -1.0276 0.0080 35 1 2.7191 1.1001 -2.0486 36 1 2.2082 1.6463 -4.6375 37 1 3.8985 1.1136 -4.4718 38 1 3.4613 -0.7620 -6.0333 39 1 1.7709 -0.2297 -6.1995 40 1 4.1825 0.0853 -8.7852 41 1 2.4971 -0.4447 -8.4865 42 1 1.7268 1.2028 -9.9092 43 1 3.4105 1.7336 -10.2094 44 1 2.0052 4.1469 -10.6900 45 1 0.4313 4.6563 -10.3966 46 1 3.4920 -2.4076 -1.2755 47 1 4.1681 -0.8636 -0.6563 48 1 3.6801 -2.0210 1.3954 49 1 2.2020 -2.7693 0.7168 50 1 3.4261 -2.7125 3.9687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479713121.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:41 Heat of formation + Delta-G solvation = -133.612247 kcal Electronic energy + Delta-G solvation = -29526.756262 eV Core-core repulsion = 25359.885709 eV Total energy + Delta-G solvation = -4166.870553 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.32520 -40.92630 -39.50881 -39.09066 -35.58344 -34.89681 -34.48122 -33.77529 -32.91202 -32.08322 -30.72266 -29.71751 -26.92257 -25.93851 -25.44287 -23.30323 -22.17374 -21.92758 -21.54511 -21.46497 -20.96388 -18.73117 -18.64735 -18.06420 -17.85556 -17.49519 -17.16034 -16.77285 -16.60004 -16.02252 -15.80714 -15.66080 -15.46702 -15.28440 -14.78761 -14.59816 -14.43069 -14.15963 -14.11283 -13.99531 -13.58295 -13.25340 -13.00919 -12.95106 -12.72234 -12.68974 -12.61519 -12.59732 -12.24123 -12.10115 -12.02697 -11.96037 -11.89493 -11.62850 -11.57986 -11.43784 -11.05448 -10.79991 -10.71406 -10.71108 -10.62504 -9.97224 -8.90047 -7.74645 -5.19692 1.47900 1.51066 1.54989 1.57163 1.70643 2.19879 2.21881 2.53000 3.11051 3.35312 3.51077 3.60114 3.75560 3.85679 3.87352 3.95579 3.96654 3.99578 4.16915 4.20788 4.23872 4.35582 4.48530 4.49835 4.59657 4.62539 4.69994 4.70825 4.78412 4.81296 4.93824 4.95371 5.05109 5.05441 5.10054 5.13741 5.15988 5.31650 5.36185 5.49693 5.59890 5.65051 5.79100 5.79976 5.93670 6.30419 6.46265 6.63144 7.11354 7.32529 7.33176 7.78822 8.42790 9.27203 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025534 B = 0.001861 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.302972 B =15043.456458 C =15728.208743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.150 3.850 3 H 0.052 0.948 4 C 0.150 3.850 5 H 0.075 0.925 6 N -0.708 5.708 7 C 0.509 3.491 8 O -0.588 6.588 9 C -0.128 4.128 10 C -0.095 4.095 11 C 0.072 3.928 12 H 0.102 0.898 13 C -0.150 4.150 14 C -0.136 4.136 15 C 0.051 3.949 16 H 0.129 0.871 17 C 0.514 3.486 18 N -0.828 5.828 19 O -0.588 6.588 20 O -0.377 6.377 21 C -0.136 4.136 22 C 0.158 3.842 23 N -0.613 5.613 24 C -0.228 4.228 25 H 0.084 0.916 26 C -0.070 4.070 27 N -0.951 5.951 28 Si 0.980 3.020 29 H -0.296 1.296 30 H -0.275 1.275 31 H -0.281 1.281 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.414 0.586 36 H 0.102 0.898 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.109 0.891 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.126 0.874 44 H 0.421 0.579 45 H 0.410 0.590 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.079 0.921 49 H -0.018 1.018 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.786 13.256 -32.269 35.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.043 3.957 3 H 0.069 0.931 4 C 0.044 3.956 5 H 0.093 0.907 6 N -0.359 5.359 7 C 0.298 3.702 8 O -0.468 6.468 9 C -0.167 4.167 10 C -0.133 4.133 11 C 0.015 3.985 12 H 0.120 0.880 13 C -0.188 4.188 14 C -0.174 4.174 15 C -0.010 4.010 16 H 0.147 0.853 17 C 0.299 3.701 18 N -0.394 5.394 19 O -0.468 6.468 20 O -0.297 6.297 21 C -0.176 4.176 22 C 0.032 3.968 23 N -0.339 5.339 24 C -0.357 4.357 25 H 0.102 0.898 26 C -0.262 4.262 27 N -0.600 5.600 28 Si 0.808 3.192 29 H -0.222 1.222 30 H -0.200 1.200 31 H -0.208 1.208 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.251 0.749 36 H 0.121 0.879 37 H 0.142 0.858 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.128 0.872 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.144 0.856 44 H 0.254 0.746 45 H 0.242 0.758 46 H 0.084 0.916 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.000 1.000 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.924 12.373 -31.536 34.233 hybrid contribution -0.387 0.170 1.073 1.153 sum 4.537 12.543 -30.464 33.256 Atomic orbital electron populations 1.22120 0.96882 1.00575 1.01029 1.21203 0.93318 0.95158 0.86025 0.93058 1.21678 0.96200 0.90996 0.86695 0.90724 1.45938 1.68103 1.16167 1.05704 1.21418 0.76131 0.88796 0.83846 1.90672 1.50107 1.23112 1.82954 1.21651 1.05344 0.97757 0.91974 1.21368 1.02431 0.97511 0.91957 1.23269 0.93058 0.86768 0.95365 0.87997 1.23021 1.03927 0.98497 0.93334 1.22932 1.03378 0.92650 0.98398 1.23103 0.95877 0.96982 0.85035 0.85327 1.20799 0.88889 0.78850 0.81578 1.43568 1.21776 1.53046 1.21048 1.90783 1.37479 1.63466 1.55027 1.89277 1.59468 1.49312 1.31611 1.23146 0.97685 0.99964 0.96791 1.21627 0.95628 0.87758 0.91783 1.44720 1.59361 1.28961 1.00816 1.19353 1.26408 1.08180 0.81779 0.89822 1.25635 1.00849 0.97740 1.02007 1.70045 1.40198 1.19009 1.30787 0.85126 0.77446 0.77175 0.79416 1.22213 1.20038 1.20758 0.93331 0.91487 0.94691 0.74940 0.87932 0.85790 0.89410 0.93203 0.87208 0.91553 0.91457 0.85565 0.74645 0.75836 0.91624 0.90880 0.90347 0.99956 0.94419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.65 9.15 71.98 0.66 -4.99 16 2 C 0.15 6.12 3.47 45.34 0.16 6.27 16 3 H 0.05 1.96 7.72 -2.39 -0.02 1.94 16 4 C 0.15 5.62 2.85 46.18 0.13 5.75 16 5 H 0.07 3.10 7.26 -2.39 -0.02 3.09 16 6 N -0.71 -20.38 5.18 -436.93 -2.26 -22.65 16 7 C 0.51 14.78 7.83 87.66 0.69 15.47 16 8 O -0.59 -22.19 15.63 -3.04 -0.05 -22.24 16 9 C -0.13 -2.51 5.62 29.85 0.17 -2.34 16 10 C -0.09 -1.84 4.14 30.59 0.13 -1.71 16 11 C 0.07 0.98 3.28 31.09 0.10 1.08 16 12 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 13 C -0.15 -1.39 6.63 31.61 0.21 -1.18 16 14 C -0.14 -0.88 6.62 31.61 0.21 -0.67 16 15 C 0.05 0.58 3.70 30.35 0.11 0.69 16 16 H 0.13 0.54 8.14 -2.39 -0.02 0.53 16 17 C 0.51 8.34 7.35 87.66 0.64 8.98 16 18 N -0.83 -4.44 8.87 -173.53 -1.54 -5.98 16 19 O -0.59 -17.39 17.39 15.28 0.27 -17.12 16 20 O -0.38 -7.46 10.26 -130.65 -1.34 -8.80 16 21 C -0.14 -5.53 6.76 31.91 0.22 -5.31 16 22 C 0.16 8.08 5.87 86.78 0.51 8.59 16 23 N -0.61 -31.50 3.13 -668.70 -2.09 -33.59 16 24 C -0.23 -12.68 9.87 84.03 0.83 -11.85 16 25 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 26 C -0.07 -3.99 5.49 84.86 0.47 -3.53 16 27 N -0.95 -57.26 10.09 21.65 0.22 -57.04 16 28 Si 0.98 45.96 29.55 68.60 2.03 47.99 16 29 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 30 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 31 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 32 H 0.05 1.90 8.02 -2.39 -0.02 1.88 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.41 9.45 8.37 -92.71 -0.78 8.68 16 36 H 0.10 2.03 7.91 -2.39 -0.02 2.01 16 37 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.09 1.65 8.10 -2.39 -0.02 1.63 16 39 H 0.05 1.27 8.10 -2.38 -0.02 1.25 16 40 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 41 H 0.07 0.85 7.87 -2.39 -0.02 0.83 16 42 H 0.07 0.62 7.87 -2.39 -0.02 0.60 16 43 H 0.13 -0.19 8.14 -2.38 -0.02 -0.21 16 44 H 0.42 -1.23 8.83 -92.71 -0.82 -2.05 16 45 H 0.41 1.92 8.93 -92.71 -0.83 1.09 16 46 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 47 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 48 H 0.08 4.51 5.89 -2.39 -0.01 4.49 16 49 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 50 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -85.57 402.47 -1.00 -86.57 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -1.45 Total: 17.58 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 5.23 Total: 15.27 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -5.68 Total: -119.26 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -1.12 Total: -48.16 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -85.57 -1.00 -86.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479713121.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.039 kcal (2) G-P(sol) polarization free energy of solvation -85.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds