Wall clock time and date at job start Sat Apr 11 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.52341 * 2 1 4 4 C 1.53100 * 109.51941 * 120.12568 * 2 1 3 5 5 O 1.42908 * 109.41145 * 177.51277 * 4 2 1 6 6 C 1.42894 * 114.09865 * 298.84063 * 5 4 2 7 7 C 1.53096 * 109.41507 * 61.16179 * 6 5 4 8 8 C 1.53178 * 109.52150 * 239.80967 * 2 1 3 9 9 H 1.09003 * 109.54455 * 302.97688 * 8 2 1 10 10 C 1.50696 * 109.54535 * 63.25039 * 8 2 1 11 11 O 1.21286 * 119.99425 * 359.55004 * 10 8 2 12 12 N 1.34772 * 120.00360 * 179.55584 * 10 8 2 13 13 C 1.46501 * 120.00191 * 180.02562 * 12 10 8 14 14 H 1.09006 * 112.84757 * 334.66126 * 13 12 10 15 15 C 1.53771 * 113.61596 * 105.86354 * 13 12 10 16 16 C 1.54046 * 86.98892 * 89.15815 * 15 13 12 17 17 H 1.08993 * 113.69421 * 270.87380 * 16 15 13 18 18 N 1.46902 * 113.61800 * 139.97644 * 16 15 13 19 19 C 1.46905 * 110.99855 * 107.50962 * 18 16 15 20 20 C 1.50705 * 109.46728 * 179.97438 * 19 18 16 21 21 O 1.21290 * 120.00132 * 0.02562 * 20 19 18 22 22 N 1.34775 * 119.99304 * 179.97438 * 20 19 18 23 23 C 1.37099 * 119.99761 * 179.97438 * 22 20 19 24 24 H 1.07999 * 119.99911 * 0.02562 * 23 22 20 25 25 C 1.38947 * 120.00137 * 180.02562 * 23 22 20 26 26 N 1.31420 * 120.00167 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 120.00164 * 359.97438 * 25 23 22 28 28 H 1.48499 * 109.47121 * 89.99928 * 27 25 23 29 29 H 1.48502 * 109.47307 * 210.00297 * 27 25 23 30 30 H 1.48503 * 109.47232 * 330.00282 * 27 25 23 31 31 C 1.53778 * 87.07738 * 25.43304 * 16 15 13 32 32 H 1.08996 * 109.47398 * 299.87523 * 1 2 3 33 33 H 1.09004 * 109.47291 * 59.87438 * 1 2 3 34 34 H 1.09002 * 109.47352 * 179.87203 * 1 2 3 35 35 H 1.08996 * 109.48261 * 57.53069 * 4 2 1 36 36 H 1.08996 * 109.49181 * 297.50259 * 4 2 1 37 37 H 1.08997 * 109.48587 * 301.17794 * 6 5 4 38 38 H 1.09005 * 109.49175 * 181.14792 * 6 5 4 39 39 H 1.08998 * 109.52300 * 62.29682 * 7 6 5 40 40 H 1.09004 * 109.51858 * 182.48409 * 7 6 5 41 41 H 0.97004 * 119.99567 * 0.02562 * 12 10 8 42 42 H 1.09001 * 113.61444 * 203.66812 * 15 13 12 43 43 H 1.09001 * 113.61704 * 334.56522 * 15 13 12 44 44 H 1.00898 * 111.00399 * 343.55575 * 18 16 15 45 45 H 1.08998 * 109.46615 * 299.99925 * 19 18 16 46 46 H 1.08995 * 109.47061 * 59.99833 * 19 18 16 47 47 H 0.97000 * 120.00789 * 0.02562 * 22 20 19 48 48 H 0.96998 * 119.99879 * 180.02562 * 26 25 23 49 49 H 1.09000 * 113.61921 * 220.02576 * 31 16 15 50 50 H 1.09001 * 113.61784 * 89.11613 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0415 -0.7242 1.2481 5 8 3.4694 -0.7737 1.2168 6 6 4.0043 -1.4816 0.0967 7 6 3.5716 -0.7878 -1.1977 8 6 2.0418 -0.7260 -1.2479 9 1 1.6367 -1.7376 -1.2731 10 6 1.6079 0.0238 -2.4810 11 8 0.9465 1.0348 -2.3744 12 7 1.9546 -0.4292 -3.7020 13 6 1.5331 0.3001 -4.9007 14 1 0.6305 0.8901 -4.7417 15 6 2.6704 1.0838 -5.5766 16 6 2.9578 -0.1928 -6.3894 17 1 3.6608 -0.8709 -5.9058 18 7 3.2922 0.0677 -7.7959 19 6 4.7213 -0.1606 -8.0483 20 6 5.0256 0.1154 -9.4982 21 8 4.1394 0.4681 -10.2475 22 7 6.2828 -0.0287 -9.9620 23 6 6.5597 0.2219 -11.2812 24 1 5.7705 0.5351 -11.9485 25 6 7.8557 0.0728 -11.7595 26 7 8.1212 0.3135 -13.0239 27 14 9.2210 -0.4684 -10.6051 28 1 9.3143 -1.9504 -10.6093 29 1 10.5112 0.1102 -11.0588 30 1 8.9227 0.0049 -9.2295 31 6 1.4841 -0.5717 -6.1667 32 1 -0.3634 0.5119 0.8910 33 1 -0.3634 0.5158 -0.8889 34 1 -0.3634 -1.0277 -0.0023 35 1 1.6431 -1.7385 1.2688 36 1 1.7158 -0.1876 2.1391 37 1 3.6315 -2.5059 0.1022 38 1 5.0925 -1.4906 0.1580 39 1 3.9780 0.2232 -1.2224 40 1 3.9417 -1.3513 -2.0542 41 1 2.4832 -1.2381 -3.7871 42 1 2.3236 1.9196 -6.1844 43 1 3.4754 1.3599 -4.8955 44 1 3.0223 1.0020 -8.0647 45 1 5.3121 0.5053 -7.4194 46 1 4.9703 -1.1960 -7.8158 47 1 6.9917 -0.3105 -9.3628 48 1 9.0259 0.2091 -13.3579 49 1 1.3318 -1.6313 -5.9615 50 1 0.8135 -0.1878 -6.9354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480156092.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:45 Heat of formation + Delta-G solvation = -100.043739 kcal Electronic energy + Delta-G solvation = -29342.885114 eV Core-core repulsion = 25177.470201 eV Total energy + Delta-G solvation = -4165.414913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.08586 -39.78279 -38.64328 -38.10929 -34.85013 -34.65533 -33.95864 -33.07388 -32.01514 -31.64355 -27.70568 -27.02804 -26.23146 -25.88790 -24.30282 -22.96049 -22.80162 -21.75995 -20.31145 -19.84032 -19.31746 -18.32963 -17.82540 -16.64805 -16.61231 -16.12833 -15.99982 -15.69097 -15.43206 -15.10199 -14.88386 -14.84572 -14.75033 -14.51471 -14.22603 -13.62685 -13.46290 -13.22169 -12.92504 -12.84883 -12.64837 -12.59006 -12.40424 -12.32273 -12.21369 -11.96358 -11.87749 -11.61417 -11.45889 -11.20564 -11.12272 -10.94529 -10.92888 -10.62829 -10.56092 -10.36111 -9.99701 -9.73030 -9.59911 -9.34061 -8.61287 -8.21514 -8.13460 -6.33259 -3.84840 2.24785 2.73738 2.99747 3.04286 3.12742 3.39156 3.70982 4.01423 4.04692 4.08540 4.16341 4.17608 4.30256 4.38770 4.47180 4.65101 4.68077 4.70907 4.80905 4.90346 4.92570 4.96283 5.02985 5.11573 5.17548 5.20159 5.24548 5.36182 5.40263 5.52338 5.55057 5.56847 5.59979 5.65011 5.65954 5.74393 5.81628 5.86384 5.88709 5.91264 6.01746 6.30588 6.69037 7.09073 7.13413 7.52466 7.56174 7.87938 8.12160 8.57265 8.92643 9.39953 9.79955 10.79825 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.001925 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.979826 B =14541.786080 C =15868.343273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 H 0.087 0.913 4 C 0.065 3.935 5 O -0.382 6.382 6 C 0.062 3.938 7 C -0.149 4.149 8 C -0.106 4.106 9 H 0.098 0.902 10 C 0.522 3.478 11 O -0.531 6.531 12 N -0.711 5.711 13 C 0.119 3.881 14 H 0.103 0.897 15 C -0.180 4.180 16 C 0.068 3.932 17 H 0.093 0.907 18 N -0.657 5.657 19 C 0.047 3.953 20 C 0.449 3.551 21 O -0.565 6.565 22 N -0.590 5.590 23 C -0.305 4.305 24 H 0.120 0.880 25 C 0.041 3.959 26 N -0.881 5.881 27 Si 0.880 3.120 28 H -0.271 1.271 29 H -0.277 1.277 30 H -0.270 1.270 31 C -0.132 4.132 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.400 0.600 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.354 0.646 45 H 0.045 0.955 46 H 0.086 0.914 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.073 0.927 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.436 -5.878 30.116 32.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.124 4.124 3 H 0.105 0.895 4 C -0.012 4.012 5 O -0.300 6.300 6 C -0.015 4.015 7 C -0.187 4.187 8 C -0.127 4.127 9 H 0.116 0.884 10 C 0.308 3.692 11 O -0.407 6.407 12 N -0.362 5.362 13 C 0.013 3.987 14 H 0.121 0.879 15 C -0.221 4.221 16 C -0.043 4.043 17 H 0.111 0.889 18 N -0.288 5.288 19 C -0.085 4.085 20 C 0.234 3.766 21 O -0.447 6.447 22 N -0.230 5.230 23 C -0.434 4.434 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.521 5.521 27 Si 0.707 3.293 28 H -0.196 1.196 29 H -0.202 1.202 30 H -0.196 1.196 31 C -0.171 4.171 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.115 0.885 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.234 0.766 42 H 0.113 0.887 43 H 0.087 0.913 44 H 0.175 0.825 45 H 0.063 0.937 46 H 0.104 0.896 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.091 0.909 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.425 -5.427 29.389 31.996 hybrid contribution 1.846 -0.219 0.799 2.023 sum -9.579 -5.646 30.189 32.172 Atomic orbital electron populations 1.21918 0.93745 1.01713 1.03780 1.21582 0.97166 1.00778 0.92923 0.89460 1.22730 0.80789 0.99710 0.97988 1.87964 1.20457 1.76291 1.45303 1.22578 0.99525 0.94442 0.84918 1.22230 0.93624 1.03292 0.99540 1.21463 0.97093 1.00690 0.93492 0.88360 1.20514 0.79182 0.85095 0.84368 1.90673 1.38505 1.25050 1.86503 1.45742 1.55899 1.29275 1.05274 1.21769 0.98333 0.94721 0.83901 0.87904 1.24234 0.99201 0.98581 1.00047 1.23151 0.96634 0.96395 0.88151 0.88916 1.60015 1.16454 1.34979 1.17350 1.21749 0.89357 1.01613 0.95816 1.19728 0.83301 0.84504 0.89038 1.90568 1.45374 1.50473 1.58237 1.42210 1.07925 1.62026 1.10818 1.19434 0.96608 1.43400 0.83973 0.86277 1.25050 0.97378 0.97713 0.96074 1.69625 1.21275 1.47982 1.13182 0.86662 0.82538 0.79565 0.80544 1.19597 1.20172 1.19566 1.23456 0.97733 1.00016 0.95850 0.92492 0.89934 0.93207 0.93019 0.88459 0.92842 0.88335 0.90219 0.90175 0.76560 0.88749 0.91297 0.82478 0.93744 0.89570 0.79715 0.91598 0.90874 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.92 37.16 0.33 -0.77 16 2 C -0.11 -0.75 2.05 -90.48 -0.19 -0.94 16 3 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 4 C 0.06 0.40 6.13 37.21 0.23 0.63 16 5 O -0.38 -3.01 10.77 -35.23 -0.38 -3.39 16 6 C 0.06 0.34 6.84 37.21 0.25 0.59 16 7 C -0.15 -0.81 5.29 -26.59 -0.14 -0.95 16 8 C -0.11 -0.67 2.11 -91.59 -0.19 -0.86 16 9 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 10 C 0.52 4.63 6.88 -10.99 -0.08 4.55 16 11 O -0.53 -6.66 13.48 5.55 0.07 -6.58 16 12 N -0.71 -5.23 5.17 -53.02 -0.27 -5.50 16 13 C 0.12 1.05 4.30 -67.12 -0.29 0.76 16 14 H 0.10 1.06 7.50 -51.93 -0.39 0.67 16 15 C -0.18 -1.74 7.51 -25.78 -0.19 -1.94 16 16 C 0.07 0.70 4.07 -66.76 -0.27 0.42 16 17 H 0.09 0.83 7.86 -51.93 -0.41 0.42 16 18 N -0.66 -9.52 6.24 -106.98 -0.67 -10.18 16 19 C 0.05 0.75 6.01 -4.97 -0.03 0.72 16 20 C 0.45 10.02 7.82 -10.98 -0.09 9.93 16 21 O -0.56 -15.03 15.78 5.55 0.09 -14.94 16 22 N -0.59 -13.89 5.09 -10.96 -0.06 -13.95 16 23 C -0.31 -8.60 10.16 -14.93 -0.15 -8.75 16 24 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 25 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 26 N -0.88 -25.62 13.96 55.50 0.77 -24.84 16 27 Si 0.88 19.15 27.73 -169.99 -4.71 14.43 16 28 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 29 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 30 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 31 C -0.13 -1.18 7.62 -25.92 -0.20 -1.38 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.79 5.80 -51.93 -0.30 0.49 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.30 7.67 -51.93 -0.40 -0.10 16 41 H 0.40 2.02 8.19 -40.82 -0.33 1.69 16 42 H 0.09 0.95 7.83 -51.93 -0.41 0.55 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.35 5.42 7.90 -39.29 -0.31 5.11 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.20 8.13 -51.93 -0.42 0.78 16 47 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 48 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 398.27 15.07 6.00 6.00 Total: -1.00 -34.62 398.27 -8.50 -43.12 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -8.25 Total: 12.78 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.10 Total: 3.04 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.22 Total: -54.47 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.22 Total: -24.90 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.62 -8.50 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480156092.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.924 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds