Wall clock time and date at job start Sat Apr 11 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.52341 * 2 1 4 4 C 1.53100 * 109.51941 * 120.12568 * 2 1 3 5 5 O 1.42908 * 109.41145 * 177.51277 * 4 2 1 6 6 C 1.42894 * 114.09865 * 298.84063 * 5 4 2 7 7 C 1.53096 * 109.41507 * 61.16179 * 6 5 4 8 8 C 1.53178 * 109.52150 * 239.80967 * 2 1 3 9 9 H 1.09003 * 109.54455 * 302.97688 * 8 2 1 10 10 C 1.50696 * 109.54535 * 63.25039 * 8 2 1 11 11 O 1.21286 * 119.99425 * 359.55004 * 10 8 2 12 12 N 1.34772 * 120.00360 * 179.55584 * 10 8 2 13 13 C 1.46501 * 120.00191 * 180.02562 * 12 10 8 14 14 H 1.09006 * 112.84757 * 334.66126 * 13 12 10 15 15 C 1.53771 * 113.61596 * 105.86354 * 13 12 10 16 16 C 1.54046 * 86.98892 * 89.15815 * 15 13 12 17 17 H 1.08993 * 113.69421 * 270.87380 * 16 15 13 18 18 N 1.46902 * 113.61800 * 139.97644 * 16 15 13 19 19 C 1.46905 * 110.99855 * 107.50962 * 18 16 15 20 20 C 1.50705 * 109.46728 * 179.97438 * 19 18 16 21 21 O 1.21290 * 120.00132 * 0.02562 * 20 19 18 22 22 N 1.34775 * 119.99304 * 179.97438 * 20 19 18 23 23 C 1.37099 * 119.99761 * 179.97438 * 22 20 19 24 24 H 1.07999 * 119.99911 * 0.02562 * 23 22 20 25 25 C 1.38947 * 120.00137 * 180.02562 * 23 22 20 26 26 N 1.31420 * 120.00167 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 120.00164 * 359.97438 * 25 23 22 28 28 H 1.48499 * 109.47121 * 89.99928 * 27 25 23 29 29 H 1.48502 * 109.47307 * 210.00297 * 27 25 23 30 30 H 1.48503 * 109.47232 * 330.00282 * 27 25 23 31 31 C 1.53778 * 87.07738 * 25.43304 * 16 15 13 32 32 H 1.08996 * 109.47398 * 299.87523 * 1 2 3 33 33 H 1.09004 * 109.47291 * 59.87438 * 1 2 3 34 34 H 1.09002 * 109.47352 * 179.87203 * 1 2 3 35 35 H 1.08996 * 109.48261 * 57.53069 * 4 2 1 36 36 H 1.08996 * 109.49181 * 297.50259 * 4 2 1 37 37 H 1.08997 * 109.48587 * 301.17794 * 6 5 4 38 38 H 1.09005 * 109.49175 * 181.14792 * 6 5 4 39 39 H 1.08998 * 109.52300 * 62.29682 * 7 6 5 40 40 H 1.09004 * 109.51858 * 182.48409 * 7 6 5 41 41 H 0.97004 * 119.99567 * 0.02562 * 12 10 8 42 42 H 1.09001 * 113.61444 * 203.66812 * 15 13 12 43 43 H 1.09001 * 113.61704 * 334.56522 * 15 13 12 44 44 H 1.00898 * 111.00399 * 343.55575 * 18 16 15 45 45 H 1.08998 * 109.46615 * 299.99925 * 19 18 16 46 46 H 1.08995 * 109.47061 * 59.99833 * 19 18 16 47 47 H 0.97000 * 120.00789 * 0.02562 * 22 20 19 48 48 H 0.96998 * 119.99879 * 180.02562 * 26 25 23 49 49 H 1.09000 * 113.61921 * 220.02576 * 31 16 15 50 50 H 1.09001 * 113.61784 * 89.11613 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0415 -0.7242 1.2481 5 8 3.4694 -0.7737 1.2168 6 6 4.0043 -1.4816 0.0967 7 6 3.5716 -0.7878 -1.1977 8 6 2.0418 -0.7260 -1.2479 9 1 1.6367 -1.7376 -1.2731 10 6 1.6079 0.0238 -2.4810 11 8 0.9465 1.0348 -2.3744 12 7 1.9546 -0.4292 -3.7020 13 6 1.5331 0.3001 -4.9007 14 1 0.6305 0.8901 -4.7417 15 6 2.6704 1.0838 -5.5766 16 6 2.9578 -0.1928 -6.3894 17 1 3.6608 -0.8709 -5.9058 18 7 3.2922 0.0677 -7.7959 19 6 4.7213 -0.1606 -8.0483 20 6 5.0256 0.1154 -9.4982 21 8 4.1394 0.4681 -10.2475 22 7 6.2828 -0.0287 -9.9620 23 6 6.5597 0.2219 -11.2812 24 1 5.7705 0.5351 -11.9485 25 6 7.8557 0.0728 -11.7595 26 7 8.1212 0.3135 -13.0239 27 14 9.2210 -0.4684 -10.6051 28 1 9.3143 -1.9504 -10.6093 29 1 10.5112 0.1102 -11.0588 30 1 8.9227 0.0049 -9.2295 31 6 1.4841 -0.5717 -6.1667 32 1 -0.3634 0.5119 0.8910 33 1 -0.3634 0.5158 -0.8889 34 1 -0.3634 -1.0277 -0.0023 35 1 1.6431 -1.7385 1.2688 36 1 1.7158 -0.1876 2.1391 37 1 3.6315 -2.5059 0.1022 38 1 5.0925 -1.4906 0.1580 39 1 3.9780 0.2232 -1.2224 40 1 3.9417 -1.3513 -2.0542 41 1 2.4832 -1.2381 -3.7871 42 1 2.3236 1.9196 -6.1844 43 1 3.4754 1.3599 -4.8955 44 1 3.0223 1.0020 -8.0647 45 1 5.3121 0.5053 -7.4194 46 1 4.9703 -1.1960 -7.8158 47 1 6.9917 -0.3105 -9.3628 48 1 9.0259 0.2091 -13.3579 49 1 1.3318 -1.6313 -5.9615 50 1 0.8135 -0.1878 -6.9354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480156092.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:44 Heat of formation + Delta-G solvation = -128.492671 kcal Electronic energy + Delta-G solvation = -29344.118753 eV Core-core repulsion = 25177.470201 eV Total energy + Delta-G solvation = -4166.648551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.73027 -40.58932 -40.04662 -39.06973 -36.17480 -35.50382 -35.26586 -33.92278 -33.68159 -32.61845 -28.72751 -27.95927 -26.85823 -26.64580 -25.85629 -23.95112 -23.26446 -22.40223 -21.33204 -20.85397 -20.62569 -20.08902 -18.45039 -17.79573 -17.19203 -17.07480 -17.02786 -16.54642 -16.50463 -16.20411 -15.93426 -15.81939 -15.47859 -15.32893 -15.09280 -15.02689 -14.52445 -14.41770 -14.14306 -14.06912 -13.57326 -13.49053 -13.35132 -13.14727 -13.06705 -12.89038 -12.79336 -12.57956 -12.42715 -12.41197 -11.99243 -11.97621 -11.74227 -11.58911 -11.51055 -11.45495 -11.32771 -10.92876 -10.42408 -10.30514 -10.24806 -10.04904 -9.24089 -8.41177 -6.02402 1.30300 1.36323 1.45236 1.58651 1.96058 2.10826 2.23488 2.75200 2.98907 3.15051 3.35888 3.50657 3.59359 3.64554 3.70600 3.76898 3.92550 3.96386 4.07116 4.17519 4.21808 4.27024 4.47161 4.47375 4.50332 4.55968 4.60040 4.63103 4.66374 4.74652 4.80851 4.82528 4.85250 4.95052 4.96689 5.03069 5.09700 5.11852 5.17240 5.32497 5.39684 5.52599 5.60809 5.92675 6.13325 6.28021 6.37140 6.55192 6.59998 6.88250 7.26178 7.39926 7.96891 8.76487 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.001925 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.979826 B =14541.786080 C =15868.343273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 H 0.057 0.943 4 C 0.067 3.933 5 O -0.406 6.406 6 C 0.058 3.942 7 C -0.144 4.144 8 C -0.100 4.100 9 H 0.124 0.876 10 C 0.519 3.481 11 O -0.574 6.574 12 N -0.698 5.698 13 C 0.126 3.874 14 H 0.084 0.916 15 C -0.177 4.177 16 C 0.071 3.929 17 H 0.119 0.881 18 N -0.675 5.675 19 C 0.062 3.938 20 C 0.446 3.554 21 O -0.616 6.616 22 N -0.590 5.590 23 C -0.330 4.330 24 H 0.053 0.947 25 C -0.017 4.017 26 N -0.935 5.935 27 Si 0.967 3.033 28 H -0.255 1.255 29 H -0.277 1.277 30 H -0.230 1.230 31 C -0.124 4.124 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.416 0.584 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.345 0.655 45 H 0.075 0.925 46 H 0.119 0.881 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.090 0.910 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.779 -8.645 33.668 35.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.124 4.124 3 H 0.076 0.924 4 C -0.010 4.010 5 O -0.325 6.325 6 C -0.019 4.019 7 C -0.182 4.182 8 C -0.121 4.121 9 H 0.142 0.858 10 C 0.306 3.694 11 O -0.453 6.453 12 N -0.349 5.349 13 C 0.019 3.981 14 H 0.102 0.898 15 C -0.218 4.218 16 C -0.039 4.039 17 H 0.137 0.863 18 N -0.306 5.306 19 C -0.070 4.070 20 C 0.234 3.766 21 O -0.501 6.501 22 N -0.232 5.232 23 C -0.459 4.459 24 H 0.072 0.928 25 C -0.216 4.216 26 N -0.576 5.576 27 Si 0.787 3.213 28 H -0.180 1.180 29 H -0.202 1.202 30 H -0.153 1.153 31 C -0.163 4.163 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.077 0.923 40 H 0.123 0.877 41 H 0.253 0.747 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.165 0.835 45 H 0.093 0.907 46 H 0.137 0.863 47 H 0.226 0.774 48 H 0.088 0.912 49 H 0.109 0.891 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.768 -8.229 32.972 35.359 hybrid contribution 1.181 0.707 -0.379 1.428 sum -8.587 -7.522 32.593 34.534 Atomic orbital electron populations 1.21848 0.93856 1.02386 1.02642 1.21527 0.97038 0.99549 0.94248 0.92413 1.22757 0.80272 1.00571 0.97355 1.87934 1.21201 1.76938 1.46468 1.22762 1.00100 0.95073 0.83938 1.22219 0.92555 1.02597 1.00792 1.21482 0.97933 1.01224 0.91479 0.85785 1.21018 0.78372 0.84636 0.85328 1.90670 1.40487 1.27078 1.87105 1.45606 1.55529 1.29471 1.04327 1.21559 0.97429 0.94631 0.84446 0.89761 1.24177 0.99402 0.98326 0.99889 1.23309 0.97701 0.96955 0.85891 0.86270 1.60050 1.15737 1.34611 1.20246 1.21696 0.90674 1.04112 0.90523 1.21098 0.82058 0.81794 0.91658 1.90548 1.46893 1.52052 1.60593 1.42032 1.09220 1.62702 1.09273 1.19004 0.95833 1.45335 0.85724 0.92837 1.26164 1.00338 0.96863 0.98228 1.69815 1.22475 1.49187 1.16080 0.85337 0.77052 0.79653 0.79278 1.17976 1.20183 1.15321 1.23371 0.96734 1.00930 0.95237 0.92091 0.92622 0.91525 0.91117 0.88235 0.90864 0.87535 0.92305 0.87681 0.74698 0.89794 0.91192 0.83538 0.90707 0.86334 0.77410 0.91162 0.89117 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.92 71.98 0.64 -1.39 16 2 C -0.10 -1.39 2.05 -10.70 -0.02 -1.42 16 3 H 0.06 1.10 8.03 -2.39 -0.02 1.08 16 4 C 0.07 0.70 6.13 72.02 0.44 1.14 16 5 O -0.41 -5.63 10.77 -148.98 -1.60 -7.23 16 6 C 0.06 0.45 6.84 72.01 0.49 0.94 16 7 C -0.14 -1.15 5.29 30.69 0.16 -0.98 16 8 C -0.10 -1.04 2.11 -11.42 -0.02 -1.06 16 9 H 0.12 0.68 8.14 -2.39 -0.02 0.67 16 10 C 0.52 8.46 6.88 87.66 0.60 9.07 16 11 O -0.57 -14.56 13.48 -3.05 -0.04 -14.60 16 12 N -0.70 -8.46 5.17 -440.04 -2.27 -10.73 16 13 C 0.13 2.04 4.30 45.52 0.20 2.24 16 14 H 0.08 1.74 7.50 -2.38 -0.02 1.72 16 15 C -0.18 -3.13 7.51 31.21 0.23 -2.90 16 16 C 0.07 1.24 4.07 45.53 0.19 1.43 16 17 H 0.12 1.49 7.86 -2.39 -0.02 1.47 16 18 N -0.68 -18.19 6.24 -492.38 -3.07 -21.27 16 19 C 0.06 1.75 6.01 85.56 0.51 2.27 16 20 C 0.45 19.65 7.82 87.66 0.69 20.34 16 21 O -0.62 -33.91 15.78 -3.06 -0.05 -33.96 16 22 N -0.59 -27.30 5.09 -306.99 -1.56 -28.86 16 23 C -0.33 -19.22 10.16 84.04 0.85 -18.36 16 24 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 25 C -0.02 -0.96 5.50 84.92 0.47 -0.50 16 26 N -0.93 -56.22 13.96 21.66 0.30 -55.92 16 27 Si 0.97 38.03 27.73 68.60 1.90 39.94 16 28 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 29 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 30 H -0.23 -7.49 6.52 99.48 0.65 -6.85 16 31 C -0.12 -1.95 7.62 31.12 0.24 -1.71 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 1.09 5.80 -2.38 -0.01 1.07 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.10 0.31 7.67 -2.38 -0.02 0.29 16 41 H 0.42 2.45 8.19 -92.71 -0.76 1.69 16 42 H 0.08 1.67 7.83 -2.39 -0.02 1.65 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.35 10.39 7.90 -89.70 -0.71 9.68 16 45 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.12 2.66 8.13 -2.39 -0.02 2.64 16 47 H 0.39 14.70 5.76 -92.71 -0.53 14.16 16 48 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 49 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -83.07 398.27 -1.82 -84.89 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: -1.09 Total: 38.66 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.67 Total: 9.10 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -6.61 Total: -116.78 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -1.69 Total: -55.80 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 1.90 Total: 39.94 kcal Total: -83.07 -1.82 -84.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480156092.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.601 kcal (2) G-P(sol) polarization free energy of solvation -83.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds