Wall clock time and date at job start Sat Apr 11 2020 05:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.57160 * 2 1 4 4 C 1.53088 * 109.52485 * 239.83872 * 2 1 3 5 5 O 1.42906 * 109.41475 * 182.48682 * 4 2 1 6 6 C 1.42903 * 114.09634 * 61.15554 * 5 4 2 7 7 C 1.53085 * 109.41698 * 298.84229 * 6 5 4 8 8 C 1.53183 * 109.51747 * 120.15149 * 2 1 3 9 9 H 1.08997 * 109.61429 * 56.98076 * 8 2 1 10 10 C 1.50696 * 109.54240 * 296.75250 * 8 2 1 11 11 O 1.21275 * 120.00369 * 0.45163 * 10 8 2 12 12 N 1.34774 * 119.99541 * 180.44707 * 10 8 2 13 13 C 1.46506 * 119.99981 * 180.02562 * 12 10 8 14 14 H 1.08998 * 112.85063 * 23.80349 * 13 12 10 15 15 C 1.53781 * 113.61613 * 154.99882 * 13 12 10 16 16 C 1.53786 * 87.17350 * 89.15811 * 15 13 12 17 17 H 1.09000 * 113.60973 * 270.92699 * 16 15 13 18 18 N 1.46899 * 113.61541 * 140.02506 * 16 15 13 19 19 C 1.46895 * 110.99736 * 154.99883 * 18 16 15 20 20 C 1.50707 * 109.46819 * 179.97438 * 19 18 16 21 21 O 1.21293 * 119.99955 * 0.02562 * 20 19 18 22 22 N 1.34773 * 119.99775 * 179.97438 * 20 19 18 23 23 C 1.37105 * 119.99694 * 179.97438 * 22 20 19 24 24 H 1.07991 * 120.00186 * 0.02562 * 23 22 20 25 25 C 1.38956 * 119.99633 * 179.97438 * 23 22 20 26 26 N 1.31409 * 120.00071 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99776 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46843 * 90.00173 * 27 25 23 29 29 H 1.48498 * 109.47134 * 210.00700 * 27 25 23 30 30 H 1.48506 * 109.47024 * 330.00699 * 27 25 23 31 31 C 1.53781 * 113.68810 * 252.53321 * 13 12 10 32 32 H 1.08992 * 109.47703 * 299.84732 * 1 2 3 33 33 H 1.09006 * 109.46808 * 59.85148 * 1 2 3 34 34 H 1.09008 * 109.47060 * 179.84514 * 1 2 3 35 35 H 1.09004 * 109.48306 * 62.50282 * 4 2 1 36 36 H 1.09003 * 109.48123 * 302.46967 * 4 2 1 37 37 H 1.09000 * 109.47412 * 178.85637 * 6 5 4 38 38 H 1.09005 * 109.47660 * 58.83091 * 6 5 4 39 39 H 1.09000 * 109.52670 * 297.70321 * 7 6 5 40 40 H 1.08997 * 109.57580 * 177.54448 * 7 6 5 41 41 H 0.97003 * 120.00744 * 359.97438 * 12 10 8 42 42 H 1.09002 * 113.61445 * 203.74810 * 15 13 12 43 43 H 1.09002 * 113.61408 * 334.56541 * 15 13 12 44 44 H 1.00896 * 110.99714 * 278.94970 * 18 16 15 45 45 H 1.09000 * 109.47573 * 299.99566 * 19 18 16 46 46 H 1.08994 * 109.47310 * 60.00041 * 19 18 16 47 47 H 0.97002 * 120.00192 * 0.02562 * 22 20 19 48 48 H 0.97003 * 119.99839 * 179.97438 * 26 25 23 49 49 H 1.09005 * 113.61471 * 25.42227 * 31 13 12 50 50 H 1.08996 * 113.61178 * 156.23569 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7249 -1.2475 5 8 3.4695 -0.7743 -1.2161 6 6 4.0044 -1.4815 -0.0954 7 6 3.5716 -0.7870 1.1983 8 6 2.0418 -0.7252 1.2485 9 1 1.6367 -1.7367 1.2759 10 6 1.6077 0.0254 2.4809 11 8 0.9463 1.0363 2.3738 12 7 1.9544 -0.4268 3.7023 13 6 1.5319 0.3026 4.9006 14 1 0.6442 0.9127 4.7338 15 6 1.4473 -0.5769 6.1593 16 6 2.9251 -0.2313 6.4075 17 1 3.6209 -0.9194 5.9275 18 7 3.2435 0.0105 7.8210 19 6 4.6633 -0.2503 8.0928 20 6 4.9517 0.0084 9.5492 21 8 4.0618 0.3736 10.2881 22 7 6.1982 -0.1670 10.0308 23 6 6.4606 0.0689 11.3557 24 1 5.6685 0.3948 12.0134 25 6 7.7457 -0.1125 11.8523 26 7 8.7094 -0.5096 11.0521 27 14 8.1032 0.2082 13.6576 28 1 7.8948 -1.0411 14.4329 29 1 9.5102 0.6575 13.8114 30 1 7.1885 1.2631 14.1635 31 6 2.6752 1.0567 5.6001 32 1 -0.3634 0.5114 0.8912 33 1 -0.3633 0.5162 -0.8887 34 1 -0.3633 -1.0277 -0.0028 35 1 1.7160 -0.1886 -2.1389 36 1 1.6432 -1.7393 -1.2676 37 1 5.0926 -1.4903 -0.1569 38 1 3.6316 -2.5059 -0.1005 39 1 3.9779 0.2241 1.2226 40 1 3.9416 -1.3489 2.0559 41 1 2.4830 -1.2356 3.7881 42 1 0.7733 -0.1851 6.9211 43 1 1.2756 -1.6316 5.9442 44 1 2.9894 0.9481 8.0936 45 1 4.8940 -1.2888 7.8553 46 1 5.2777 0.4080 7.4787 47 1 6.9098 -0.4594 9.4400 48 1 9.6065 -0.6358 11.3988 49 1 3.4963 1.3205 4.9335 50 1 2.3370 1.8959 6.2078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480156093.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:47 Heat of formation + Delta-G solvation = -133.337190 kcal Electronic energy + Delta-G solvation = -29257.328323 eV Core-core repulsion = 25090.469697 eV Total energy + Delta-G solvation = -4166.858626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.73303 -40.54676 -39.94697 -39.06448 -36.14473 -35.47658 -35.26711 -33.87932 -33.24083 -32.60693 -28.60394 -27.93581 -26.86612 -26.64487 -26.01920 -23.99998 -23.27003 -22.40762 -21.19602 -20.85188 -20.42466 -19.87999 -18.45527 -17.81646 -17.20033 -17.07886 -16.90372 -16.53516 -16.38778 -16.19346 -16.05839 -15.74394 -15.57543 -15.37278 -15.22543 -15.06038 -14.38258 -14.32579 -14.11883 -13.57380 -13.52458 -13.46219 -13.35423 -13.11016 -13.06854 -12.87996 -12.78874 -12.58563 -12.43123 -12.41735 -12.12555 -11.98672 -11.74297 -11.59164 -11.51245 -11.46031 -11.33046 -10.93169 -10.33815 -10.30707 -10.05449 -10.01692 -9.24078 -8.47158 -5.95751 1.37838 1.41802 1.54304 1.57908 2.05260 2.10470 2.29072 2.94978 2.98608 3.20212 3.43491 3.50397 3.60385 3.64863 3.70343 3.77094 3.92464 3.97213 4.06602 4.21192 4.26750 4.32290 4.46823 4.49892 4.51356 4.57674 4.60847 4.62663 4.66283 4.74310 4.79962 4.82400 4.84797 4.94986 4.96129 5.02578 5.09185 5.11234 5.16939 5.32355 5.39690 5.40984 5.59460 5.93376 6.16398 6.27646 6.39119 6.54347 6.60049 7.12455 7.25084 7.56226 8.11692 8.70102 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.001764 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.808000 B =15868.403873 C =16923.186256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 H 0.057 0.943 4 C 0.067 3.933 5 O -0.406 6.406 6 C 0.058 3.942 7 C -0.144 4.144 8 C -0.100 4.100 9 H 0.124 0.876 10 C 0.519 3.481 11 O -0.574 6.574 12 N -0.698 5.698 13 C 0.127 3.873 14 H 0.087 0.913 15 C -0.123 4.123 16 C 0.069 3.931 17 H 0.114 0.886 18 N -0.671 5.671 19 C 0.065 3.935 20 C 0.435 3.565 21 O -0.625 6.625 22 N -0.573 5.573 23 C -0.335 4.335 24 H 0.078 0.922 25 C -0.013 4.013 26 N -0.919 5.919 27 Si 0.992 3.008 28 H -0.271 1.271 29 H -0.270 1.270 30 H -0.274 1.274 31 C -0.177 4.177 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.103 0.897 41 H 0.415 0.585 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.345 0.655 45 H 0.108 0.892 46 H 0.065 0.935 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.067 0.933 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.820 -5.945 -26.334 29.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.124 4.124 3 H 0.076 0.924 4 C -0.010 4.010 5 O -0.325 6.325 6 C -0.018 4.018 7 C -0.182 4.182 8 C -0.121 4.121 9 H 0.142 0.858 10 C 0.307 3.693 11 O -0.453 6.453 12 N -0.350 5.350 13 C 0.020 3.980 14 H 0.105 0.895 15 C -0.162 4.162 16 C -0.041 4.041 17 H 0.132 0.868 18 N -0.302 5.302 19 C -0.067 4.067 20 C 0.223 3.777 21 O -0.512 6.512 22 N -0.210 5.210 23 C -0.464 4.464 24 H 0.096 0.904 25 C -0.213 4.213 26 N -0.560 5.560 27 Si 0.816 3.184 28 H -0.196 1.196 29 H -0.195 1.195 30 H -0.199 1.199 31 C -0.218 4.218 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.121 0.879 41 H 0.252 0.748 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.165 0.835 45 H 0.126 0.874 46 H 0.083 0.917 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.747 -5.573 -25.798 28.889 hybrid contribution 1.117 0.757 0.756 1.547 sum -10.630 -4.816 -25.042 27.627 Atomic orbital electron populations 1.21846 0.93768 1.02403 1.02670 1.21532 0.97104 0.99544 0.94192 0.92400 1.22763 0.80247 1.00585 0.97368 1.87936 1.21241 1.76972 1.46366 1.22751 1.00081 0.95083 0.83902 1.22216 0.92660 1.02573 1.00786 1.21484 0.97839 1.01250 0.91536 0.85771 1.21018 0.78363 0.84645 0.85299 1.90662 1.40494 1.27034 1.87082 1.45621 1.55492 1.29485 1.04400 1.21554 0.97352 0.94694 0.84379 0.89463 1.23370 0.96572 1.00902 0.95310 1.23302 0.97796 0.97032 0.85972 0.86806 1.60056 1.16997 1.33956 1.19188 1.21587 0.90559 1.03252 0.91287 1.20977 0.82496 0.82779 0.91452 1.90494 1.46247 1.53119 1.61310 1.41938 1.09214 1.59957 1.09916 1.19662 0.95595 1.44643 0.86524 0.90409 1.26031 0.94601 0.96391 1.04248 1.69665 1.02378 1.46562 1.37409 0.84937 0.77661 0.78680 0.77114 1.19609 1.19521 1.19884 1.24180 0.99403 0.98372 0.99813 0.92609 0.92038 0.91502 0.88154 0.91092 0.87589 0.90829 0.92346 0.87863 0.74781 0.89035 0.89235 0.83539 0.87407 0.91732 0.76921 0.91284 0.91390 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.92 71.98 0.64 -1.48 16 2 C -0.10 -1.49 2.05 -10.70 -0.02 -1.51 16 3 H 0.06 1.16 8.03 -2.39 -0.02 1.14 16 4 C 0.07 0.76 6.13 72.01 0.44 1.20 16 5 O -0.41 -6.05 10.77 -148.98 -1.60 -7.66 16 6 C 0.06 0.53 6.84 72.01 0.49 1.02 16 7 C -0.14 -1.39 5.29 30.68 0.16 -1.22 16 8 C -0.10 -1.16 2.11 -11.42 -0.02 -1.18 16 9 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 10 C 0.52 9.12 6.88 87.66 0.60 9.72 16 11 O -0.57 -15.09 13.46 -3.01 -0.04 -15.13 16 12 N -0.70 -9.60 5.17 -440.04 -2.28 -11.87 16 13 C 0.13 2.23 4.32 45.52 0.20 2.43 16 14 H 0.09 1.88 7.46 -2.39 -0.02 1.87 16 15 C -0.12 -2.12 7.62 31.12 0.24 -1.89 16 16 C 0.07 1.37 4.07 45.53 0.19 1.55 16 17 H 0.11 1.81 7.87 -2.39 -0.02 1.79 16 18 N -0.67 -19.71 6.24 -492.38 -3.07 -22.79 16 19 C 0.07 2.12 6.01 85.56 0.51 2.63 16 20 C 0.44 20.38 7.82 87.66 0.69 21.06 16 21 O -0.63 -34.47 15.78 -3.07 -0.05 -34.52 16 22 N -0.57 -29.04 5.29 -306.98 -1.62 -30.66 16 23 C -0.33 -18.94 9.68 84.04 0.81 -18.12 16 24 H 0.08 4.71 7.16 -2.92 -0.02 4.69 16 25 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 26 N -0.92 -49.08 13.05 21.66 0.28 -48.80 16 27 Si 0.99 42.72 29.55 68.60 2.03 44.74 16 28 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 29 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 30 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 31 C -0.18 -3.45 7.51 31.21 0.23 -3.22 16 32 H 0.05 1.12 5.79 -2.39 -0.01 1.11 16 33 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.10 0.51 7.67 -2.39 -0.02 0.49 16 41 H 0.41 3.27 8.19 -92.71 -0.76 2.51 16 42 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.34 11.03 7.91 -89.70 -0.71 10.32 16 45 H 0.11 3.04 8.13 -2.39 -0.02 3.02 16 46 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.40 18.95 7.90 -92.71 -0.73 18.22 16 48 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 49 H 0.07 1.34 8.14 -2.38 -0.02 1.33 16 50 H 0.09 1.82 7.84 -2.39 -0.02 1.80 16 Total: -1.00 -74.05 401.36 -1.96 -76.01 By element: Atomic # 1 Polarization: 41.13 SS G_CDS: -1.23 Total: 39.90 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 5.63 Total: 10.78 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -6.69 Total: -114.13 kcal Atomic # 8 Polarization: -55.62 SS G_CDS: -1.69 Total: -57.31 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -74.05 -1.96 -76.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480156093.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.331 kcal (2) G-P(sol) polarization free energy of solvation -74.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds