Wall clock time and date at job start Sat Apr 11 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.33278 * 2 1 4 4 C 1.54475 * 110.37108 * 122.25517 * 2 1 3 5 5 C 1.54509 * 104.06598 * 142.81301 * 4 2 1 6 6 C 1.54482 * 104.05980 * 359.97438 * 5 4 2 7 7 H 1.09005 * 110.36648 * 94.96810 * 6 5 4 8 8 C 1.53000 * 110.37076 * 217.19180 * 6 5 4 9 9 C 1.52997 * 109.47060 * 185.00310 * 8 6 5 10 10 C 1.50697 * 109.47466 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00011 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00369 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00115 * 180.02562 * 12 10 9 14 14 C 1.53933 * 113.73053 * 253.76250 * 13 12 10 15 15 N 1.48182 * 86.10048 * 221.95661 * 14 13 12 16 16 C 1.46906 * 111.06970 * 137.52277 * 15 14 13 17 17 C 1.50701 * 109.46903 * 90.56687 * 16 15 14 18 18 O 1.21289 * 120.00116 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99791 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99877 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00218 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00075 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99854 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00313 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46869 * 359.97438 * 24 22 20 26 26 H 1.48490 * 109.47370 * 119.99436 * 24 22 20 27 27 H 1.48501 * 109.47285 * 239.99837 * 24 22 20 28 28 C 1.47959 * 90.79991 * 24.60502 * 15 14 13 29 29 O 1.44417 * 104.80392 * 336.02776 * 6 5 4 30 30 H 1.08994 * 109.47142 * 297.75009 * 1 2 3 31 31 H 1.09005 * 109.47436 * 57.74991 * 1 2 3 32 32 H 1.09000 * 109.47085 * 177.74387 * 1 2 3 33 33 H 1.08995 * 110.51582 * 24.15945 * 4 2 1 34 34 H 1.09007 * 110.50838 * 261.45155 * 4 2 1 35 35 H 1.09005 * 110.50729 * 241.35054 * 5 4 2 36 36 H 1.08991 * 110.63235 * 118.70020 * 5 4 2 37 37 H 1.09002 * 109.47398 * 305.00479 * 8 6 5 38 38 H 1.09001 * 109.47194 * 65.00660 * 8 6 5 39 39 H 1.09002 * 109.47153 * 300.00319 * 9 8 6 40 40 H 1.08998 * 109.47533 * 59.99948 * 9 8 6 41 41 H 0.97003 * 119.99640 * 0.02562 * 12 10 9 42 42 H 1.08999 * 112.93521 * 25.33063 * 13 12 10 43 43 H 1.08996 * 113.76396 * 336.24403 * 14 13 12 44 44 H 1.09010 * 113.75457 * 107.60400 * 14 13 12 45 45 H 1.09000 * 109.47130 * 210.56538 * 16 15 14 46 46 H 1.08998 * 109.46886 * 330.56967 * 16 15 14 47 47 H 0.96998 * 120.00222 * 359.97438 * 19 17 16 48 48 H 0.96998 * 119.99873 * 180.02562 * 23 22 20 49 49 H 1.09000 * 113.75573 * 221.08357 * 28 15 14 50 50 H 1.08994 * 113.86108 * 89.73041 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0677 -0.7729 1.2247 5 6 3.3177 -1.5050 0.6874 6 6 3.3870 -1.0883 -0.7986 7 1 4.0536 -0.2348 -0.9226 8 6 3.8598 -2.2617 -1.6592 9 6 4.0406 -1.7937 -3.1046 10 6 4.5057 -2.9494 -3.9524 11 8 4.6754 -4.0402 -3.4502 12 7 4.7330 -2.7709 -5.2688 13 6 5.1846 -3.8947 -6.0932 14 6 6.6691 -3.8130 -6.4922 15 7 6.2292 -4.2656 -7.8329 16 6 6.9112 -3.5132 -8.8944 17 6 8.1789 -4.2295 -9.2827 18 8 8.4845 -5.2646 -8.7293 19 7 8.9737 -3.7194 -10.2442 20 6 10.1268 -4.3713 -10.5979 21 1 10.3985 -5.2935 -10.1057 22 6 10.9465 -3.8451 -11.5888 23 7 10.6162 -2.7228 -12.1874 24 14 12.5179 -4.7329 -12.0702 25 1 12.6609 -5.9644 -11.2527 26 1 12.4599 -5.0972 -13.5086 27 1 13.6824 -3.8428 -11.8315 28 6 4.8715 -3.7292 -7.5913 29 8 2.0324 -0.7254 -1.1435 30 1 -0.3633 0.4785 0.9094 31 1 -0.3634 0.5484 -0.8691 32 1 -0.3633 -1.0269 -0.0405 33 1 1.3275 -1.4903 1.5787 34 1 2.3429 -0.0819 2.0216 35 1 3.1955 -2.5846 0.7758 36 1 4.2119 -1.1782 1.2181 37 1 4.8101 -2.6335 -1.2761 38 1 3.1175 -3.0592 -1.6257 39 1 3.0902 -1.4218 -3.4876 40 1 4.7828 -0.9962 -3.1382 41 1 4.5977 -1.8984 -5.6704 42 1 4.8918 -4.8633 -5.6881 43 1 7.0719 -2.8003 -6.4808 44 1 7.3038 -4.5303 -5.9717 45 1 6.2570 -3.4359 -9.7628 46 1 7.1546 -2.5142 -8.5327 47 1 8.7296 -2.8914 -10.6866 48 1 11.1882 -2.3557 -12.8794 49 1 4.0726 -4.3796 -7.9474 50 1 4.7456 -2.6920 -7.9017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481604504.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:59 Heat of formation + Delta-G solvation = -94.352811 kcal Electronic energy + Delta-G solvation = -28429.667732 eV Core-core repulsion = 24264.499596 eV Total energy + Delta-G solvation = -4165.168136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.55020 -40.02385 -39.03351 -37.65370 -34.28915 -34.14161 -33.76606 -32.65134 -31.28751 -31.10363 -29.69673 -27.06188 -26.08400 -25.39875 -23.93786 -22.96311 -21.75503 -21.21013 -20.57339 -20.01922 -19.21641 -17.88573 -17.29855 -16.95032 -16.52759 -16.44218 -16.10210 -15.48284 -15.43850 -15.09530 -14.68239 -14.54100 -14.25275 -14.14782 -13.76948 -13.63432 -13.46755 -13.15816 -12.86919 -12.85780 -12.66311 -12.57475 -12.21487 -12.09297 -11.99694 -11.60356 -11.54727 -11.45852 -11.29691 -11.20151 -11.16640 -11.05998 -11.03169 -10.64928 -10.32501 -10.20135 -10.13801 -9.97878 -9.48997 -9.16616 -8.75456 -8.17575 -7.93788 -6.39827 -3.80297 2.49943 2.95694 3.17830 3.28193 3.35978 3.38024 3.91136 3.96133 4.14694 4.19130 4.22745 4.45263 4.46672 4.47148 4.53930 4.71780 4.81447 4.86168 4.94615 4.96143 5.00329 5.08530 5.13011 5.18988 5.22010 5.32206 5.36527 5.37178 5.38627 5.41345 5.57845 5.61779 5.63815 5.67511 5.68788 5.70191 5.75217 5.90226 5.93617 6.12049 6.26346 6.37917 6.50926 6.55385 7.12019 7.34028 7.57529 8.08503 8.09036 8.64576 9.20999 9.56957 10.09614 10.78219 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028928 B = 0.001468 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.691165 B =19069.948145 C =19151.303496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.067 0.933 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.074 3.926 7 H 0.070 0.930 8 C -0.097 4.097 9 C -0.139 4.139 10 C 0.513 3.487 11 O -0.539 6.539 12 N -0.723 5.723 13 C 0.117 3.883 14 C 0.000 4.000 15 N -0.445 5.445 16 C 0.013 3.987 17 C 0.446 3.554 18 O -0.573 6.573 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.904 5.904 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.008 4.008 29 O -0.367 6.367 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.400 0.600 42 H 0.124 0.876 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.057 0.943 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.096 0.904 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.899 11.340 22.935 32.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.016 3.984 7 H 0.088 0.912 8 C -0.135 4.135 9 C -0.179 4.179 10 C 0.300 3.700 11 O -0.415 6.415 12 N -0.375 5.375 13 C 0.012 3.988 14 C -0.130 4.130 15 N -0.168 5.168 16 C -0.119 4.119 17 C 0.231 3.769 18 O -0.456 6.456 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.546 5.546 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.138 4.138 29 O -0.287 6.287 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.234 0.766 42 H 0.141 0.859 43 H 0.088 0.912 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.075 0.925 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.115 0.885 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.480 9.198 23.114 31.597 hybrid contribution 0.754 1.690 -0.656 1.963 sum -18.726 10.888 22.458 31.202 Atomic orbital electron populations 1.21805 0.93242 1.03025 1.02368 1.22960 0.95334 0.95346 0.85231 0.91480 1.23003 0.97846 0.99811 0.98299 1.22980 0.98434 1.01893 0.95687 1.23043 0.84708 0.96991 0.93609 0.91239 1.21409 1.02813 0.96750 0.92487 1.21663 1.03521 0.97032 0.95714 1.20776 0.76570 0.90263 0.82383 1.90719 1.51415 1.26903 1.72472 1.46125 1.69007 1.13419 1.08933 1.23045 0.94512 0.91812 0.89436 1.24506 0.96725 1.00483 0.91291 1.68390 1.01020 1.45807 1.01581 1.22465 0.97129 0.95641 0.96693 1.19677 0.85730 0.87591 0.83909 1.90534 1.74296 1.24863 1.55924 1.41874 1.20896 1.24195 1.33555 1.19760 0.97603 1.07358 1.17939 0.87896 1.25244 0.99802 0.96347 0.96601 1.69618 1.39131 1.19603 1.26198 0.85805 0.80903 0.79360 0.78323 1.19211 1.20762 1.20813 1.24405 0.95227 0.99997 0.94163 1.89160 1.26985 1.74336 1.38230 0.91249 0.91855 0.91717 0.90543 0.90670 0.90278 0.90455 0.89705 0.90162 0.88257 0.88957 0.76565 0.85866 0.91182 0.88535 0.89297 0.92456 0.77595 0.92000 0.88537 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.52 37.16 0.35 -0.41 16 2 C 0.07 0.42 3.92 -25.96 -0.10 0.32 16 3 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 4 C -0.15 -0.79 6.63 -25.17 -0.17 -0.96 16 5 C -0.15 -0.89 6.63 -25.16 -0.17 -1.06 16 6 C 0.07 0.51 3.25 -25.95 -0.08 0.43 16 7 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 8 C -0.10 -0.79 4.13 -26.73 -0.11 -0.90 16 9 C -0.14 -1.06 5.64 -27.89 -0.16 -1.22 16 10 C 0.51 5.64 7.83 -10.99 -0.09 5.56 16 11 O -0.54 -8.19 15.60 5.56 0.09 -8.11 16 12 N -0.72 -6.99 5.37 -54.95 -0.30 -7.29 16 13 C 0.12 1.45 4.39 -69.64 -0.31 1.14 16 14 C 0.00 0.00 7.77 -2.64 -0.02 -0.02 16 15 N -0.45 -7.44 5.65 -239.71 -1.35 -8.80 16 16 C 0.01 0.23 5.28 -4.97 -0.03 0.20 16 17 C 0.45 10.79 7.83 -10.99 -0.09 10.70 16 18 O -0.57 -16.18 16.01 5.55 0.09 -16.09 16 19 N -0.57 -14.58 5.29 -10.96 -0.06 -14.64 16 20 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 21 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 24 Si 0.93 21.30 29.55 -169.99 -5.02 16.27 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 C -0.01 -0.10 7.70 -2.76 -0.02 -0.12 16 29 O -0.37 -3.09 10.82 -35.23 -0.38 -3.47 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.39 7.87 -51.93 -0.41 -0.02 16 34 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 35 H 0.08 0.50 7.87 -51.93 -0.41 0.09 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 39 H 0.10 0.69 8.01 -51.93 -0.42 0.27 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.40 2.69 8.71 -40.82 -0.36 2.33 16 42 H 0.12 1.75 7.51 -51.93 -0.39 1.36 16 43 H 0.07 0.97 7.49 -51.93 -0.39 0.58 16 44 H 0.10 1.67 8.14 -51.92 -0.42 1.24 16 45 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 46 H 0.06 0.89 7.39 -51.93 -0.38 0.51 16 47 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.07 0.68 7.89 -51.93 -0.41 0.27 16 LS Contribution 410.17 15.07 6.18 6.18 Total: -1.00 -35.26 410.17 -9.73 -44.99 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -8.48 Total: 9.34 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -1.22 Total: 5.60 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.98 Total: -54.73 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.21 Total: -27.66 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.26 -9.73 -44.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481604504.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.361 kcal (2) G-P(sol) polarization free energy of solvation -35.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds