Wall clock time and date at job start Sat Apr 11 2020 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.33278 * 2 1 4 4 C 1.54475 * 110.37108 * 122.25517 * 2 1 3 5 5 C 1.54509 * 104.06598 * 142.81301 * 4 2 1 6 6 C 1.54482 * 104.05980 * 359.97438 * 5 4 2 7 7 H 1.09005 * 110.36648 * 94.96810 * 6 5 4 8 8 C 1.53000 * 110.37076 * 217.19180 * 6 5 4 9 9 C 1.52997 * 109.47060 * 185.00310 * 8 6 5 10 10 C 1.50697 * 109.47466 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00011 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00369 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00115 * 180.02562 * 12 10 9 14 14 C 1.53933 * 113.73053 * 253.76250 * 13 12 10 15 15 N 1.48182 * 86.10048 * 221.95661 * 14 13 12 16 16 C 1.46906 * 111.06970 * 137.52277 * 15 14 13 17 17 C 1.50701 * 109.46903 * 90.56687 * 16 15 14 18 18 O 1.21289 * 120.00116 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99791 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99877 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00218 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00075 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99854 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00313 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46869 * 359.97438 * 24 22 20 26 26 H 1.48490 * 109.47370 * 119.99436 * 24 22 20 27 27 H 1.48501 * 109.47285 * 239.99837 * 24 22 20 28 28 C 1.47959 * 90.79991 * 24.60502 * 15 14 13 29 29 O 1.44417 * 104.80392 * 336.02776 * 6 5 4 30 30 H 1.08994 * 109.47142 * 297.75009 * 1 2 3 31 31 H 1.09005 * 109.47436 * 57.74991 * 1 2 3 32 32 H 1.09000 * 109.47085 * 177.74387 * 1 2 3 33 33 H 1.08995 * 110.51582 * 24.15945 * 4 2 1 34 34 H 1.09007 * 110.50838 * 261.45155 * 4 2 1 35 35 H 1.09005 * 110.50729 * 241.35054 * 5 4 2 36 36 H 1.08991 * 110.63235 * 118.70020 * 5 4 2 37 37 H 1.09002 * 109.47398 * 305.00479 * 8 6 5 38 38 H 1.09001 * 109.47194 * 65.00660 * 8 6 5 39 39 H 1.09002 * 109.47153 * 300.00319 * 9 8 6 40 40 H 1.08998 * 109.47533 * 59.99948 * 9 8 6 41 41 H 0.97003 * 119.99640 * 0.02562 * 12 10 9 42 42 H 1.08999 * 112.93521 * 25.33063 * 13 12 10 43 43 H 1.08996 * 113.76396 * 336.24403 * 14 13 12 44 44 H 1.09010 * 113.75457 * 107.60400 * 14 13 12 45 45 H 1.09000 * 109.47130 * 210.56538 * 16 15 14 46 46 H 1.08998 * 109.46886 * 330.56967 * 16 15 14 47 47 H 0.96998 * 120.00222 * 359.97438 * 19 17 16 48 48 H 0.96998 * 119.99873 * 180.02562 * 23 22 20 49 49 H 1.09000 * 113.75573 * 221.08357 * 28 15 14 50 50 H 1.08994 * 113.86108 * 89.73041 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0677 -0.7729 1.2247 5 6 3.3177 -1.5050 0.6874 6 6 3.3870 -1.0883 -0.7986 7 1 4.0536 -0.2348 -0.9226 8 6 3.8598 -2.2617 -1.6592 9 6 4.0406 -1.7937 -3.1046 10 6 4.5057 -2.9494 -3.9524 11 8 4.6754 -4.0402 -3.4502 12 7 4.7330 -2.7709 -5.2688 13 6 5.1846 -3.8947 -6.0932 14 6 6.6691 -3.8130 -6.4922 15 7 6.2292 -4.2656 -7.8329 16 6 6.9112 -3.5132 -8.8944 17 6 8.1789 -4.2295 -9.2827 18 8 8.4845 -5.2646 -8.7293 19 7 8.9737 -3.7194 -10.2442 20 6 10.1268 -4.3713 -10.5979 21 1 10.3985 -5.2935 -10.1057 22 6 10.9465 -3.8451 -11.5888 23 7 10.6162 -2.7228 -12.1874 24 14 12.5179 -4.7329 -12.0702 25 1 12.6609 -5.9644 -11.2527 26 1 12.4599 -5.0972 -13.5086 27 1 13.6824 -3.8428 -11.8315 28 6 4.8715 -3.7292 -7.5913 29 8 2.0324 -0.7254 -1.1435 30 1 -0.3633 0.4785 0.9094 31 1 -0.3634 0.5484 -0.8691 32 1 -0.3633 -1.0269 -0.0405 33 1 1.3275 -1.4903 1.5787 34 1 2.3429 -0.0819 2.0216 35 1 3.1955 -2.5846 0.7758 36 1 4.2119 -1.1782 1.2181 37 1 4.8101 -2.6335 -1.2761 38 1 3.1175 -3.0592 -1.6257 39 1 3.0902 -1.4218 -3.4876 40 1 4.7828 -0.9962 -3.1382 41 1 4.5977 -1.8984 -5.6704 42 1 4.8918 -4.8633 -5.6881 43 1 7.0719 -2.8003 -6.4808 44 1 7.3038 -4.5303 -5.9717 45 1 6.2570 -3.4359 -9.7628 46 1 7.1546 -2.5142 -8.5327 47 1 8.7296 -2.8914 -10.6866 48 1 11.1882 -2.3557 -12.8794 49 1 4.0726 -4.3796 -7.9474 50 1 4.7456 -2.6920 -7.9017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481604504.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:58 Heat of formation + Delta-G solvation = -122.485431 kcal Electronic energy + Delta-G solvation = -28430.887654 eV Core-core repulsion = 24264.499596 eV Total energy + Delta-G solvation = -4166.388058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.59902 -40.66206 -40.15141 -39.36463 -35.96813 -35.04190 -34.88406 -33.28937 -33.13465 -31.78785 -30.91417 -27.85939 -27.18208 -26.98919 -25.14550 -23.81019 -22.29592 -21.70276 -21.47860 -21.16371 -20.88040 -19.90518 -18.10959 -17.92482 -17.61553 -17.34444 -17.05846 -16.58902 -16.56108 -16.27132 -15.91928 -15.81701 -15.66504 -15.15854 -14.87133 -14.65010 -14.32067 -14.19612 -13.96952 -13.73148 -13.67234 -13.51835 -13.34543 -13.07522 -13.00575 -12.72492 -12.62264 -12.51351 -12.44023 -12.35726 -12.13191 -12.05574 -11.89535 -11.76134 -11.64199 -11.51114 -11.48262 -10.92315 -10.64124 -10.38916 -10.11728 -10.00933 -9.69442 -8.47359 -5.95782 1.35701 1.40898 1.55021 1.62745 2.05526 2.08936 2.29676 2.80659 2.90405 3.18973 3.29671 3.54019 3.61187 3.71926 3.79845 3.85543 3.98533 4.04913 4.10740 4.17688 4.27994 4.28862 4.34822 4.39766 4.44947 4.51951 4.53106 4.58164 4.67186 4.70515 4.75492 4.78784 4.84014 4.96450 4.97922 4.99446 5.11781 5.18560 5.21394 5.27604 5.32885 5.35435 5.40641 5.46549 5.86355 6.03178 6.06561 6.56018 6.61086 7.13439 7.27501 7.56726 8.14096 8.70262 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028928 B = 0.001468 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.691165 B =19069.948145 C =19151.303496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.062 3.938 3 H 0.078 0.922 4 C -0.149 4.149 5 C -0.155 4.155 6 C 0.076 3.924 7 H 0.085 0.915 8 C -0.095 4.095 9 C -0.128 4.128 10 C 0.510 3.490 11 O -0.588 6.588 12 N -0.707 5.707 13 C 0.130 3.870 14 C -0.004 4.004 15 N -0.485 5.485 16 C 0.028 3.972 17 C 0.439 3.561 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.335 4.335 21 H 0.075 0.925 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.276 1.276 26 H -0.270 1.270 27 H -0.269 1.269 28 C 0.010 3.990 29 O -0.390 6.390 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.419 0.581 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.060 0.940 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.106 0.894 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.761 14.034 22.869 33.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.005 3.995 3 H 0.096 0.904 4 C -0.187 4.187 5 C -0.193 4.193 6 C 0.019 3.981 7 H 0.103 0.897 8 C -0.133 4.133 9 C -0.168 4.168 10 C 0.298 3.702 11 O -0.468 6.468 12 N -0.360 5.360 13 C 0.024 3.976 14 C -0.134 4.134 15 N -0.208 5.208 16 C -0.104 4.104 17 C 0.226 3.774 18 O -0.508 6.508 19 N -0.212 5.212 20 C -0.464 4.464 21 H 0.093 0.907 22 C -0.210 4.210 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.201 1.201 26 H -0.195 1.195 27 H -0.195 1.195 28 C -0.119 4.119 29 O -0.310 6.310 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.131 0.869 40 H 0.138 0.862 41 H 0.257 0.743 42 H 0.117 0.883 43 H 0.105 0.895 44 H 0.078 0.922 45 H 0.132 0.868 46 H 0.105 0.895 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.125 0.875 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.377 11.962 23.025 32.992 hybrid contribution 0.991 0.837 -0.603 1.430 sum -19.386 12.799 22.422 32.286 Atomic orbital electron populations 1.21819 0.92815 1.02539 1.03157 1.23151 0.95799 0.95723 0.84870 0.90432 1.23008 0.97346 0.99928 0.98415 1.23010 0.99460 1.01401 0.95403 1.23063 0.84551 0.96806 0.93724 0.89674 1.21349 1.01778 0.96795 0.93386 1.21660 1.04728 0.95982 0.94397 1.21433 0.75563 0.90449 0.82727 1.90708 1.53569 1.29077 1.73404 1.45941 1.68040 1.13592 1.08408 1.22618 0.92667 0.91834 0.90513 1.24503 0.97948 1.00179 0.90787 1.68305 1.03576 1.47316 1.01648 1.22349 0.94054 0.95802 0.98204 1.20905 0.87098 0.87071 0.82319 1.90500 1.75846 1.27223 1.57231 1.41930 1.20707 1.24374 1.34237 1.19674 0.99738 1.07528 1.19477 0.90746 1.25987 1.02289 0.96940 0.95829 1.69665 1.40108 1.20063 1.26175 0.84899 0.77395 0.78019 0.78184 1.20123 1.19468 1.19455 1.24452 0.92615 1.02109 0.92725 1.89131 1.27629 1.74798 1.39427 0.89510 0.92121 0.92730 0.90799 0.89015 0.91383 0.89140 0.90427 0.92519 0.86945 0.86241 0.74276 0.88278 0.89544 0.92165 0.86790 0.89535 0.76901 0.91279 0.87546 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.52 71.98 0.68 -0.64 16 2 C 0.06 0.66 3.92 31.09 0.12 0.78 16 3 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 4 C -0.15 -1.33 6.63 31.61 0.21 -1.12 16 5 C -0.15 -1.66 6.63 31.61 0.21 -1.45 16 6 C 0.08 0.95 3.25 31.10 0.10 1.05 16 7 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 8 C -0.10 -1.51 4.13 30.59 0.13 -1.38 16 9 C -0.13 -1.71 5.64 29.85 0.17 -1.55 16 10 C 0.51 10.77 7.83 87.66 0.69 11.45 16 11 O -0.59 -18.39 15.60 -3.04 -0.05 -18.44 16 12 N -0.71 -12.25 5.37 -446.16 -2.40 -14.65 16 13 C 0.13 3.10 4.39 46.56 0.20 3.30 16 14 C 0.00 -0.12 7.77 86.37 0.67 0.55 16 15 N -0.49 -15.72 5.65 -912.31 -5.15 -20.87 16 16 C 0.03 0.93 5.28 85.56 0.45 1.38 16 17 C 0.44 21.45 7.83 87.66 0.69 22.13 16 18 O -0.62 -36.41 16.01 -3.06 -0.05 -36.46 16 19 N -0.57 -29.84 5.29 -306.98 -1.62 -31.46 16 20 C -0.33 -19.39 9.68 84.04 0.81 -18.58 16 21 H 0.07 4.66 7.16 -2.91 -0.02 4.64 16 22 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 23 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16 24 Si 0.99 43.51 29.55 68.60 2.03 45.54 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 28 C 0.01 0.20 7.70 86.41 0.67 0.87 16 29 O -0.39 -6.05 10.82 -148.98 -1.61 -7.67 16 30 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.69 7.87 -2.39 -0.02 0.67 16 34 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.07 0.87 7.87 -2.38 -0.02 0.85 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 1.32 8.10 -2.39 -0.02 1.30 16 38 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 39 H 0.11 1.27 8.01 -2.39 -0.02 1.26 16 40 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.42 4.11 8.71 -92.71 -0.81 3.30 16 42 H 0.10 2.90 7.51 -2.39 -0.02 2.88 16 43 H 0.09 2.26 7.49 -2.39 -0.02 2.24 16 44 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 45 H 0.11 3.26 8.08 -2.39 -0.02 3.24 16 46 H 0.09 2.41 7.39 -2.39 -0.02 2.39 16 47 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 48 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 49 H 0.11 2.05 8.14 -2.39 -0.02 2.04 16 50 H 0.11 1.50 7.89 -2.39 -0.02 1.48 16 Total: -1.00 -80.06 410.17 -2.89 -82.95 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: -0.59 Total: 33.63 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 6.27 Total: 16.68 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -8.89 Total: -116.24 kcal Atomic # 8 Polarization: -60.86 SS G_CDS: -1.71 Total: -62.57 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -80.06 -2.89 -82.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481604504.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.532 kcal (2) G-P(sol) polarization free energy of solvation -80.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds