Wall clock time and date at job start Sat Apr 11 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00468 * 2 1 4 4 O 1.42896 * 109.46988 * 134.99621 * 3 2 1 5 5 C 1.42905 * 113.99835 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47330 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99616 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00075 * 180.02562 * 6 5 4 9 9 C 1.46921 * 120.63107 * 359.97438 * 8 6 5 10 10 C 1.53184 * 108.77646 * 126.41552 * 9 8 6 11 11 C 1.53045 * 109.31188 * 54.63713 * 10 9 8 12 12 H 1.08993 * 109.46288 * 58.64138 * 11 10 9 13 13 N 1.46901 * 109.45794 * 178.61537 * 11 10 9 14 14 C 1.46902 * 110.99983 * 274.99455 * 13 11 10 15 15 C 1.50696 * 109.46978 * 180.02562 * 14 13 11 16 16 O 1.21295 * 120.00238 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00076 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00244 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99708 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00017 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99901 * 359.71836 * 20 18 17 22 22 Si 1.86800 * 120.00194 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72227 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72075 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72111 * 22 20 18 26 26 C 1.53040 * 109.53649 * 298.63295 * 11 10 9 27 27 H 1.08999 * 109.49748 * 301.41672 * 26 11 10 28 28 C 1.52995 * 109.49811 * 181.32000 * 26 11 10 29 29 C 1.46926 * 120.62618 * 180.02562 * 8 6 5 30 30 H 1.08002 * 120.00081 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.00132 * 179.97438 * 1 2 3 32 32 H 1.08005 * 119.99706 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.46452 * 15.00179 * 3 2 1 34 34 H 1.08994 * 109.47205 * 255.00169 * 3 2 1 35 35 H 1.09001 * 109.47031 * 60.00630 * 5 4 3 36 36 H 1.09000 * 109.47431 * 300.00774 * 5 4 3 37 37 H 1.08998 * 109.58908 * 6.62748 * 9 8 6 38 38 H 1.09011 * 109.58494 * 246.20494 * 9 8 6 39 39 H 1.09000 * 109.50041 * 294.68634 * 10 9 8 40 40 H 1.09003 * 109.52533 * 174.59844 * 10 9 8 41 41 H 1.00903 * 110.99970 * 38.95428 * 13 11 10 42 42 H 1.08999 * 109.46697 * 60.00741 * 14 13 11 43 43 H 1.08993 * 109.47253 * 300.00391 * 14 13 11 44 44 H 0.97004 * 119.99652 * 359.97438 * 17 15 14 45 45 H 0.97000 * 120.00371 * 0.28325 * 21 20 18 46 46 H 1.08994 * 109.47475 * 60.00008 * 28 26 11 47 47 H 1.09007 * 109.47121 * 180.02562 * 28 26 11 48 48 H 1.09006 * 109.47017 * 299.99856 * 28 26 11 49 49 H 1.08994 * 109.59103 * 353.36771 * 29 8 6 50 50 H 1.09001 * 109.58851 * 113.80210 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1267 1.2411 0.9527 5 6 3.9085 2.4347 1.0321 6 6 4.9948 2.2562 2.0613 7 8 5.0903 1.2098 2.6668 8 7 5.8600 3.2595 2.3088 9 6 5.7573 4.5327 1.5830 10 6 5.6862 5.6758 2.6002 11 6 6.8858 5.5868 3.5464 12 1 7.8086 5.6425 2.9691 13 7 6.8386 6.7009 4.5027 14 6 7.4554 7.9077 3.9358 15 6 7.3890 9.0263 4.9433 16 8 6.8776 8.8372 6.0268 17 7 7.8968 10.2374 4.6401 18 6 7.8368 11.2550 5.5569 19 1 7.3823 11.0863 6.5220 20 6 8.3609 12.5034 5.2445 21 7 8.9189 12.7070 4.0723 22 14 8.2786 13.8901 6.4933 23 1 7.0190 14.6533 6.3031 24 1 8.3115 13.3232 7.8654 25 1 9.4397 14.7963 6.3042 26 6 6.8400 4.2596 4.3072 27 1 5.9061 4.1922 4.8652 28 6 8.0213 4.1858 5.2766 29 6 6.9245 3.1002 3.3089 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3855 2.1160 0.2660 34 1 2.4756 1.4867 -0.9926 35 1 3.2691 3.2694 1.3193 36 1 4.3588 2.6394 0.0608 37 1 4.8560 4.5323 0.9701 38 1 6.6336 4.6629 0.9477 39 1 4.7632 5.5950 3.1743 40 1 5.7063 6.6315 2.0763 41 1 5.8913 6.8837 4.7984 42 1 6.9196 8.1995 3.0326 43 1 8.4971 7.7020 3.6900 44 1 8.3054 10.3888 3.7735 45 1 8.9614 11.9871 3.4236 46 1 7.9626 5.0124 5.9847 47 1 7.9886 3.2402 5.8180 48 1 8.9548 4.2519 4.7176 49 1 6.7933 2.1546 3.8349 50 1 7.8957 3.1138 2.8142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482420045.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:12 Heat of formation + Delta-G solvation = -92.421731 kcal Electronic energy + Delta-G solvation = -29235.009197 eV Core-core repulsion = 25069.924799 eV Total energy + Delta-G solvation = -4165.084398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.67724 -38.98198 -38.30859 -37.67112 -35.29567 -34.33271 -34.25190 -33.27402 -31.29715 -30.90369 -29.28729 -27.09568 -26.63600 -25.53021 -24.44373 -23.36237 -22.46198 -20.76630 -20.46668 -19.77937 -19.30542 -17.93383 -17.88157 -16.92387 -16.89859 -16.45061 -16.11715 -15.63570 -15.30280 -15.19456 -14.95777 -14.67950 -14.38502 -14.25422 -13.98000 -13.75619 -13.61245 -13.44577 -13.02981 -12.82998 -12.60678 -12.50241 -12.43480 -12.32249 -12.04845 -11.73882 -11.56129 -11.43878 -11.22998 -11.18407 -10.96410 -10.87917 -10.55738 -10.46467 -10.23704 -10.01420 -9.89601 -9.79758 -9.57428 -8.99229 -8.54815 -8.13288 -8.05091 -6.78093 -3.91426 1.64990 2.27853 2.40956 3.28596 3.33685 3.44049 3.52824 3.81382 3.99159 4.11309 4.29352 4.33241 4.50329 4.58166 4.61284 4.66299 4.67362 4.70201 4.85392 4.87430 4.92147 4.96865 5.02316 5.16161 5.19511 5.24446 5.38834 5.39070 5.43939 5.50456 5.60844 5.61825 5.74018 5.81906 5.85693 5.98085 6.03988 6.09733 6.11153 6.17031 6.24394 6.51484 6.59836 7.02854 7.09878 7.53761 7.78546 7.85874 8.05581 8.57209 8.77152 9.44758 9.84799 10.65380 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019971 B = 0.001790 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.661792 B =15635.969631 C =16413.995247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.086 3.914 4 O -0.360 6.360 5 C 0.045 3.955 6 C 0.517 3.483 7 O -0.520 6.520 8 N -0.611 5.611 9 C 0.110 3.890 10 C -0.170 4.170 11 C 0.093 3.907 12 H 0.079 0.921 13 N -0.658 5.658 14 C 0.051 3.949 15 C 0.443 3.557 16 O -0.576 6.576 17 N -0.576 5.576 18 C -0.382 4.382 19 H 0.099 0.901 20 C -0.009 4.009 21 N -0.902 5.902 22 Si 1.093 2.907 23 H -0.285 1.285 24 H -0.283 1.283 25 H -0.281 1.281 26 C -0.091 4.091 27 H 0.074 0.926 28 C -0.136 4.136 29 C 0.117 3.883 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.350 0.650 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.375 0.625 45 H 0.261 0.739 46 H 0.080 0.920 47 H 0.048 0.952 48 H 0.049 0.951 49 H 0.095 0.905 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.623 -20.216 -12.995 25.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.169 4.169 3 C 0.010 3.990 4 O -0.278 6.278 5 C -0.035 4.035 6 C 0.304 3.696 7 O -0.394 6.394 8 N -0.346 5.346 9 C -0.013 4.013 10 C -0.210 4.210 11 C -0.018 4.018 12 H 0.097 0.903 13 N -0.289 5.289 14 C -0.081 4.081 15 C 0.228 3.772 16 O -0.459 6.459 17 N -0.214 5.214 18 C -0.512 4.512 19 H 0.117 0.883 20 C -0.212 4.212 21 N -0.541 5.541 22 Si 0.919 3.081 23 H -0.211 1.211 24 H -0.209 1.209 25 H -0.206 1.206 26 C -0.110 4.110 27 H 0.092 0.908 28 C -0.194 4.194 29 C -0.005 4.005 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.136 0.864 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.170 0.830 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.208 0.792 45 H 0.072 0.928 46 H 0.099 0.901 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.113 0.887 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.912 -19.648 -11.193 24.306 hybrid contribution -0.925 -0.839 -1.819 2.206 sum -9.838 -20.487 -13.012 26.188 Atomic orbital electron populations 1.23861 0.95495 1.02422 0.99726 1.22700 0.95622 0.98114 1.00486 1.21631 0.88713 0.96371 0.92275 1.88045 1.44337 1.34897 1.60553 1.22255 0.93265 0.89308 0.98676 1.20174 0.82132 0.83681 0.83650 1.90729 1.72024 1.26745 1.49925 1.48081 1.31641 1.14142 1.40785 1.21739 1.02647 0.82726 0.94203 1.22752 1.00914 0.98479 0.98834 1.21630 0.97050 0.91664 0.91475 0.90276 1.60147 1.25996 1.04620 1.38141 1.21695 1.00293 0.90540 0.95598 1.19747 0.84832 0.83466 0.89130 1.90537 1.48696 1.82215 1.24501 1.41947 1.53105 1.09898 1.16461 1.20574 1.40360 0.91221 0.99008 0.88289 1.26503 0.94509 0.99439 1.00707 1.70878 1.41954 1.35243 1.06014 0.83093 0.76951 0.74204 0.73810 1.21145 1.20904 1.20632 1.21446 1.00802 0.92733 0.96065 0.90756 1.21642 0.96285 1.02224 0.99271 1.21798 0.89207 1.00143 0.89343 0.88354 0.87629 0.86389 0.92467 0.92043 0.90140 0.90200 0.90012 0.90688 0.90958 0.90314 0.82999 0.94050 0.89716 0.79201 0.92775 0.90111 0.93330 0.93140 0.88690 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.02 14.31 29.02 0.42 -0.61 16 2 C -0.15 -1.08 9.89 -36.03 -0.36 -1.44 16 3 C 0.09 0.61 6.35 36.00 0.23 0.84 16 4 O -0.36 -3.82 9.86 -55.14 -0.54 -4.37 16 5 C 0.04 0.37 4.76 36.01 0.17 0.54 16 6 C 0.52 5.88 7.77 -10.99 -0.09 5.79 16 7 O -0.52 -8.21 15.91 -14.35 -0.23 -8.44 16 8 N -0.61 -5.76 2.97 -172.75 -0.51 -6.27 16 9 C 0.11 0.75 6.34 -3.72 -0.02 0.73 16 10 C -0.17 -1.45 5.33 -26.61 -0.14 -1.59 16 11 C 0.09 0.99 1.89 -67.67 -0.13 0.86 16 12 H 0.08 0.82 7.80 -51.93 -0.40 0.41 16 13 N -0.66 -9.57 5.05 -107.95 -0.55 -10.12 16 14 C 0.05 0.83 5.96 -4.98 -0.03 0.80 16 15 C 0.44 10.08 7.82 -10.99 -0.09 10.00 16 16 O -0.58 -15.40 15.78 5.54 0.09 -15.31 16 17 N -0.58 -14.13 5.28 -10.96 -0.06 -14.18 16 18 C -0.38 -10.61 9.68 -14.93 -0.14 -10.76 16 19 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 20 C -0.01 -0.25 5.50 -17.47 -0.10 -0.34 16 21 N -0.90 -24.88 13.68 55.50 0.76 -24.12 16 22 Si 1.09 24.06 29.92 -169.99 -5.09 18.98 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 C -0.09 -0.97 2.60 -90.48 -0.23 -1.20 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 C -0.14 -1.54 9.03 37.16 0.34 -1.21 16 29 C 0.12 1.17 5.72 -3.69 -0.02 1.15 16 30 H 0.10 0.47 7.90 -52.49 -0.41 0.05 16 31 H 0.11 0.49 8.06 -52.49 -0.42 0.06 16 32 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.06 0.33 7.86 -51.93 -0.41 -0.08 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.50 7.69 -51.93 -0.40 0.10 16 36 H 0.08 0.44 7.94 -51.93 -0.41 0.03 16 37 H 0.08 0.38 5.93 -51.93 -0.31 0.08 16 38 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.65 7.43 -51.93 -0.39 0.27 16 41 H 0.35 5.44 8.18 -39.29 -0.32 5.12 16 42 H 0.04 0.58 7.41 -51.93 -0.38 0.20 16 43 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 44 H 0.38 8.45 6.73 -40.82 -0.27 8.18 16 45 H 0.26 6.89 6.78 -40.82 -0.28 6.62 16 46 H 0.08 1.12 7.57 -51.93 -0.39 0.73 16 47 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 407.29 15.07 6.14 6.14 Total: -1.00 -35.45 407.29 -8.33 -43.78 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -8.14 Total: 10.36 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -0.20 Total: 3.55 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.36 Total: -54.69 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.68 Total: -28.11 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.09 Total: 18.98 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.45 -8.33 -43.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482420045.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.640 kcal (2) G-P(sol) polarization free energy of solvation -35.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds