Wall clock time and date at job start Sat Apr 11 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00468 * 2 1 4 4 O 1.42896 * 109.46988 * 134.99621 * 3 2 1 5 5 C 1.42905 * 113.99835 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47330 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99616 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00075 * 180.02562 * 6 5 4 9 9 C 1.46921 * 120.63107 * 359.97438 * 8 6 5 10 10 C 1.53184 * 108.77646 * 126.41552 * 9 8 6 11 11 C 1.53045 * 109.31188 * 54.63713 * 10 9 8 12 12 H 1.08993 * 109.46288 * 58.64138 * 11 10 9 13 13 N 1.46901 * 109.45794 * 178.61537 * 11 10 9 14 14 C 1.46902 * 110.99983 * 274.99455 * 13 11 10 15 15 C 1.50696 * 109.46978 * 180.02562 * 14 13 11 16 16 O 1.21295 * 120.00238 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00076 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00244 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99708 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00017 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99901 * 359.71836 * 20 18 17 22 22 Si 1.86800 * 120.00194 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72227 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72075 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72111 * 22 20 18 26 26 C 1.53040 * 109.53649 * 298.63295 * 11 10 9 27 27 H 1.08999 * 109.49748 * 301.41672 * 26 11 10 28 28 C 1.52995 * 109.49811 * 181.32000 * 26 11 10 29 29 C 1.46926 * 120.62618 * 180.02562 * 8 6 5 30 30 H 1.08002 * 120.00081 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.00132 * 179.97438 * 1 2 3 32 32 H 1.08005 * 119.99706 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.46452 * 15.00179 * 3 2 1 34 34 H 1.08994 * 109.47205 * 255.00169 * 3 2 1 35 35 H 1.09001 * 109.47031 * 60.00630 * 5 4 3 36 36 H 1.09000 * 109.47431 * 300.00774 * 5 4 3 37 37 H 1.08998 * 109.58908 * 6.62748 * 9 8 6 38 38 H 1.09011 * 109.58494 * 246.20494 * 9 8 6 39 39 H 1.09000 * 109.50041 * 294.68634 * 10 9 8 40 40 H 1.09003 * 109.52533 * 174.59844 * 10 9 8 41 41 H 1.00903 * 110.99970 * 38.95428 * 13 11 10 42 42 H 1.08999 * 109.46697 * 60.00741 * 14 13 11 43 43 H 1.08993 * 109.47253 * 300.00391 * 14 13 11 44 44 H 0.97004 * 119.99652 * 359.97438 * 17 15 14 45 45 H 0.97000 * 120.00371 * 0.28325 * 21 20 18 46 46 H 1.08994 * 109.47475 * 60.00008 * 28 26 11 47 47 H 1.09007 * 109.47121 * 180.02562 * 28 26 11 48 48 H 1.09006 * 109.47017 * 299.99856 * 28 26 11 49 49 H 1.08994 * 109.59103 * 353.36771 * 29 8 6 50 50 H 1.09001 * 109.58851 * 113.80210 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1267 1.2411 0.9527 5 6 3.9085 2.4347 1.0321 6 6 4.9948 2.2562 2.0613 7 8 5.0903 1.2098 2.6668 8 7 5.8600 3.2595 2.3088 9 6 5.7573 4.5327 1.5830 10 6 5.6862 5.6758 2.6002 11 6 6.8858 5.5868 3.5464 12 1 7.8086 5.6425 2.9691 13 7 6.8386 6.7009 4.5027 14 6 7.4554 7.9077 3.9358 15 6 7.3890 9.0263 4.9433 16 8 6.8776 8.8372 6.0268 17 7 7.8968 10.2374 4.6401 18 6 7.8368 11.2550 5.5569 19 1 7.3823 11.0863 6.5220 20 6 8.3609 12.5034 5.2445 21 7 8.9189 12.7070 4.0723 22 14 8.2786 13.8901 6.4933 23 1 7.0190 14.6533 6.3031 24 1 8.3115 13.3232 7.8654 25 1 9.4397 14.7963 6.3042 26 6 6.8400 4.2596 4.3072 27 1 5.9061 4.1922 4.8652 28 6 8.0213 4.1858 5.2766 29 6 6.9245 3.1002 3.3089 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3855 2.1160 0.2660 34 1 2.4756 1.4867 -0.9926 35 1 3.2691 3.2694 1.3193 36 1 4.3588 2.6394 0.0608 37 1 4.8560 4.5323 0.9701 38 1 6.6336 4.6629 0.9477 39 1 4.7632 5.5950 3.1743 40 1 5.7063 6.6315 2.0763 41 1 5.8913 6.8837 4.7984 42 1 6.9196 8.1995 3.0326 43 1 8.4971 7.7020 3.6900 44 1 8.3054 10.3888 3.7735 45 1 8.9614 11.9871 3.4236 46 1 7.9626 5.0124 5.9847 47 1 7.9886 3.2402 5.8180 48 1 8.9548 4.2519 4.7176 49 1 6.7933 2.1546 3.8349 50 1 7.8957 3.1138 2.8142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482420045.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:12 Heat of formation + Delta-G solvation = -117.813823 kcal Electronic energy + Delta-G solvation = -29236.110281 eV Core-core repulsion = 25069.924799 eV Total energy + Delta-G solvation = -4166.185482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.48392 -40.35660 -39.44348 -38.54643 -36.58200 -35.98724 -34.82613 -34.20808 -33.12060 -31.98234 -29.97912 -28.38138 -27.37264 -26.41211 -25.89054 -24.43272 -23.31914 -21.70501 -21.36847 -20.97614 -20.17061 -19.94206 -18.61441 -18.08729 -17.59981 -17.44196 -16.94835 -16.85644 -16.50375 -16.20180 -15.80859 -15.77784 -15.59042 -15.42400 -15.30971 -14.97586 -14.50362 -14.16043 -14.12395 -13.86188 -13.54574 -13.43312 -13.30758 -13.15614 -13.11458 -12.94789 -12.86373 -12.71632 -12.44500 -12.00162 -11.94248 -11.90901 -11.87764 -11.77476 -11.51001 -11.44614 -11.03161 -10.84340 -10.38189 -10.28279 -10.08761 -9.78347 -9.25184 -8.91139 -6.05094 1.16568 1.47473 1.52751 1.55899 1.73818 1.82549 2.03530 2.40923 2.80879 2.89019 3.18090 3.39802 3.45766 3.63724 3.86429 3.96132 4.00119 4.03891 4.12351 4.17009 4.17944 4.22986 4.27805 4.36964 4.39340 4.43262 4.49671 4.52851 4.58580 4.67290 4.70855 4.74714 4.77276 4.93623 4.96664 5.09999 5.15116 5.30278 5.37143 5.54961 5.61960 5.64235 5.68301 5.97041 6.04112 6.06220 6.31205 6.36899 6.60417 6.77031 7.06710 7.46656 7.95905 8.56930 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019971 B = 0.001790 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.661792 B =15635.969631 C =16413.995247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.177 4.177 3 C 0.084 3.916 4 O -0.398 6.398 5 C 0.046 3.954 6 C 0.508 3.492 7 O -0.577 6.577 8 N -0.607 5.607 9 C 0.110 3.890 10 C -0.164 4.164 11 C 0.095 3.905 12 H 0.093 0.907 13 N -0.674 5.674 14 C 0.069 3.931 15 C 0.441 3.559 16 O -0.620 6.620 17 N -0.587 5.587 18 C -0.410 4.410 19 H 0.070 0.930 20 C -0.041 4.041 21 N -0.917 5.917 22 Si 1.134 2.866 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.273 1.273 26 C -0.083 4.083 27 H 0.054 0.946 28 C -0.132 4.132 29 C 0.121 3.879 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.342 0.658 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.385 0.615 45 H 0.260 0.740 46 H 0.051 0.949 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.074 0.926 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.022 -19.722 -15.472 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C 0.008 3.992 4 O -0.317 6.317 5 C -0.033 4.033 6 C 0.297 3.703 7 O -0.456 6.456 8 N -0.340 5.340 9 C -0.013 4.013 10 C -0.204 4.204 11 C -0.015 4.015 12 H 0.111 0.889 13 N -0.305 5.305 14 C -0.063 4.063 15 C 0.229 3.771 16 O -0.506 6.506 17 N -0.226 5.226 18 C -0.540 4.540 19 H 0.089 0.911 20 C -0.239 4.239 21 N -0.556 5.556 22 Si 0.954 3.046 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.198 1.198 26 C -0.103 4.103 27 H 0.073 0.927 28 C -0.190 4.190 29 C -0.001 4.001 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.161 0.839 42 H 0.091 0.909 43 H 0.122 0.878 44 H 0.219 0.781 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.092 0.908 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.304 -19.145 -13.728 25.329 hybrid contribution -0.833 -1.085 -1.023 1.708 sum -10.137 -20.230 -14.751 27.011 Atomic orbital electron populations 1.24064 0.95103 1.03478 0.97846 1.22795 0.96288 0.98147 1.02305 1.21798 0.88280 0.96568 0.92519 1.88002 1.45501 1.36379 1.61842 1.22404 0.92603 0.89239 0.99062 1.20892 0.82618 0.83083 0.83676 1.90702 1.73579 1.29090 1.52220 1.48174 1.30767 1.14810 1.40279 1.21991 1.05243 0.80305 0.93723 1.22673 0.99155 0.99890 0.98661 1.21685 0.98901 0.89710 0.91181 0.88897 1.60107 1.25536 1.04839 1.40008 1.21547 1.02118 0.88530 0.94125 1.20995 0.82353 0.84144 0.89643 1.90511 1.50028 1.83087 1.26950 1.41989 1.53985 1.10136 1.16502 1.20526 1.41588 0.92894 0.98979 0.91145 1.27737 0.93405 1.01142 1.01617 1.70942 1.42707 1.35487 1.06478 0.82605 0.77778 0.72139 0.72055 1.19558 1.20550 1.19785 1.21336 0.99486 0.93423 0.96029 0.92700 1.21573 0.97173 1.01235 0.99035 1.21672 0.90382 0.98585 0.89497 0.87095 0.86788 0.87532 0.91028 0.90251 0.87744 0.86869 0.87054 0.88506 0.91873 0.89101 0.83912 0.90933 0.87774 0.78066 0.92866 0.92962 0.92911 0.92040 0.90759 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 14.31 67.78 0.97 -0.73 16 2 C -0.18 -2.41 9.89 25.65 0.25 -2.16 16 3 C 0.08 1.04 6.35 71.24 0.45 1.49 16 4 O -0.40 -8.00 9.86 -129.94 -1.28 -9.28 16 5 C 0.05 0.63 4.76 71.24 0.34 0.97 16 6 C 0.51 10.96 7.77 87.66 0.68 11.64 16 7 O -0.58 -18.64 15.91 16.01 0.25 -18.38 16 8 N -0.61 -10.12 2.97 -818.84 -2.43 -12.55 16 9 C 0.11 1.05 6.34 86.36 0.55 1.59 16 10 C -0.16 -2.27 5.33 30.67 0.16 -2.11 16 11 C 0.09 1.81 1.89 44.94 0.08 1.90 16 12 H 0.09 1.57 7.80 -2.39 -0.02 1.55 16 13 N -0.67 -18.79 5.05 -495.45 -2.50 -21.29 16 14 C 0.07 2.08 5.96 85.56 0.51 2.59 16 15 C 0.44 20.00 7.82 87.66 0.69 20.68 16 16 O -0.62 -33.83 15.78 -3.08 -0.05 -33.88 16 17 N -0.59 -28.81 5.28 -306.98 -1.62 -30.43 16 18 C -0.41 -23.13 9.68 84.04 0.81 -22.32 16 19 H 0.07 4.31 7.16 -2.91 -0.02 4.29 16 20 C -0.04 -2.17 5.50 84.92 0.47 -1.70 16 21 N -0.92 -50.03 13.68 21.66 0.30 -49.74 16 22 Si 1.13 48.05 29.92 68.60 2.05 50.11 16 23 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 24 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 C -0.08 -1.71 2.60 -10.70 -0.03 -1.74 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 C -0.13 -2.96 9.03 71.98 0.65 -2.31 16 29 C 0.12 2.28 5.72 86.38 0.49 2.78 16 30 H 0.11 0.82 7.90 -2.91 -0.02 0.80 16 31 H 0.11 0.90 8.06 -2.91 -0.02 0.88 16 32 H 0.11 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.07 0.64 7.86 -2.39 -0.02 0.62 16 34 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.10 0.91 7.69 -2.39 -0.02 0.89 16 36 H 0.11 0.77 7.94 -2.39 -0.02 0.75 16 37 H 0.11 0.47 5.93 -2.39 -0.01 0.45 16 38 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 1.11 7.43 -2.39 -0.02 1.09 16 41 H 0.34 10.49 8.18 -89.69 -0.73 9.75 16 42 H 0.07 1.78 7.41 -2.39 -0.02 1.76 16 43 H 0.10 2.79 8.05 -2.39 -0.02 2.77 16 44 H 0.39 17.13 6.73 -92.71 -0.62 16.51 16 45 H 0.26 13.63 6.78 -92.71 -0.63 13.00 16 46 H 0.05 1.48 7.57 -2.39 -0.02 1.46 16 47 H 0.05 1.10 8.14 -2.38 -0.02 1.09 16 48 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 49 H 0.07 1.74 7.00 -2.39 -0.02 1.73 16 50 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -80.70 407.29 1.53 -79.17 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: -0.27 Total: 35.69 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 7.09 Total: 10.58 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -6.26 Total: -114.01 kcal Atomic # 8 Polarization: -60.46 SS G_CDS: -1.07 Total: -61.54 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.05 Total: 50.11 kcal Total: -80.70 1.53 -79.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482420045.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.641 kcal (2) G-P(sol) polarization free energy of solvation -80.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds