Wall clock time and date at job start Sat Apr 11 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99728 * 2 1 4 4 O 1.42903 * 109.46878 * 134.99713 * 3 2 1 5 5 C 1.42899 * 113.99629 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47140 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00000 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00301 * 180.02562 * 6 5 4 9 9 C 1.46925 * 120.62759 * 359.97438 * 8 6 5 10 10 C 1.53194 * 108.77801 * 233.58912 * 9 8 6 11 11 C 1.53039 * 109.31136 * 305.37006 * 10 9 8 12 12 H 1.09005 * 109.46334 * 301.35566 * 11 10 9 13 13 N 1.46904 * 109.46348 * 181.38395 * 11 10 9 14 14 C 1.46898 * 110.99877 * 84.99377 * 13 11 10 15 15 C 1.50704 * 109.47082 * 180.02562 * 14 13 11 16 16 O 1.21290 * 119.99754 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99691 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99690 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99720 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00211 * 179.97438 * 18 17 15 21 21 N 1.31418 * 119.99948 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00217 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.47489 * 89.99911 * 22 20 18 24 24 H 1.48504 * 109.46886 * 209.99989 * 22 20 18 25 25 H 1.48501 * 109.46672 * 329.99621 * 22 20 18 26 26 C 1.53038 * 109.53930 * 61.36194 * 11 10 9 27 27 H 1.09004 * 109.49693 * 178.65295 * 26 11 10 28 28 C 1.52999 * 109.49787 * 58.58829 * 26 11 10 29 29 C 1.46924 * 120.63024 * 179.71865 * 8 6 5 30 30 H 1.07994 * 120.00340 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99510 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.00120 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47060 * 254.99843 * 3 2 1 34 34 H 1.09001 * 109.47380 * 14.99931 * 3 2 1 35 35 H 1.09007 * 109.47484 * 299.99646 * 5 4 3 36 36 H 1.09004 * 109.47459 * 59.99983 * 5 4 3 37 37 H 1.09002 * 109.58926 * 353.38020 * 9 8 6 38 38 H 1.09007 * 109.58355 * 113.65889 * 9 8 6 39 39 H 1.08996 * 109.49296 * 65.31738 * 10 9 8 40 40 H 1.08995 * 109.50011 * 185.41854 * 10 9 8 41 41 H 1.00903 * 110.99701 * 321.04983 * 13 11 10 42 42 H 1.09000 * 109.47662 * 300.00670 * 14 13 11 43 43 H 1.09002 * 109.46688 * 60.00609 * 14 13 11 44 44 H 0.97004 * 120.00652 * 0.02562 * 17 15 14 45 45 H 0.96991 * 120.00159 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.47078 * 60.00169 * 28 26 11 47 47 H 1.09000 * 109.46996 * 179.97438 * 28 26 11 48 48 H 1.08996 * 109.46864 * 300.00094 * 28 26 11 49 49 H 1.09002 * 109.58962 * 246.19729 * 29 8 6 50 50 H 1.09001 * 109.58789 * 6.62726 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9083 2.4350 1.0321 6 6 4.9945 2.2566 2.0613 7 8 5.0897 1.2105 2.6675 8 7 5.8597 3.2600 2.3089 9 6 5.7569 4.5332 1.5830 10 6 7.1151 4.8509 0.9497 11 6 8.1959 4.8304 2.0330 12 1 7.9510 5.5608 2.8042 13 7 9.4948 5.1673 1.4350 14 6 9.6807 6.6228 1.3654 15 6 11.0206 6.9291 0.7474 16 8 11.7487 6.0239 0.3987 17 7 11.4097 8.2088 0.5821 18 6 12.6284 8.4874 0.0194 19 1 13.2764 7.6814 -0.2918 20 6 13.0295 9.8068 -0.1515 21 7 12.2403 10.7875 0.2258 22 14 14.6897 10.1864 -0.9189 23 1 14.5395 10.3020 -2.3917 24 1 15.2065 11.4667 -0.3721 25 1 15.6428 9.0925 -0.6027 26 6 8.2685 3.4351 2.6572 27 1 9.0547 3.4146 3.4120 28 6 8.5780 2.4045 1.5695 29 6 6.9201 3.1032 3.3137 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8500 -0.9352 0.0004 33 1 2.4755 1.4868 -0.9927 34 1 1.3855 2.1161 0.2660 35 1 4.3587 2.6397 0.0608 36 1 3.2688 3.2697 1.3192 37 1 5.0005 4.4490 0.8026 38 1 5.4798 5.3276 2.2761 39 1 7.3464 4.1034 0.1909 40 1 7.0799 5.8384 0.4895 41 1 9.5931 4.7462 0.5233 42 1 8.8908 7.0613 0.7555 43 1 9.6392 7.0427 2.3704 44 1 10.8275 8.9327 0.8613 45 1 12.5200 11.7085 0.1062 46 1 9.5338 2.6440 1.1035 47 1 8.6300 1.4109 2.0147 48 1 7.7910 2.4245 0.8157 49 1 6.7387 3.7836 4.1457 50 1 6.9316 2.0751 3.6755 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482420046.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:16 Heat of formation + Delta-G solvation = -89.819280 kcal Electronic energy + Delta-G solvation = -29367.890001 eV Core-core repulsion = 25202.918454 eV Total energy + Delta-G solvation = -4164.971547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.73903 -38.96489 -38.20694 -37.62172 -35.16796 -34.29533 -33.91811 -32.92634 -31.30756 -30.95561 -29.18849 -27.10124 -26.74001 -25.68238 -24.59796 -23.46804 -22.85482 -20.70622 -20.16680 -19.44470 -18.67311 -17.93955 -17.83611 -16.89310 -16.84312 -16.32420 -15.81028 -15.70472 -15.33083 -15.06419 -14.97605 -14.55683 -14.38652 -14.15513 -13.89045 -13.80954 -13.70807 -13.41324 -13.01190 -12.83025 -12.62341 -12.55758 -12.29630 -12.17513 -11.80522 -11.68467 -11.61261 -11.50336 -11.42054 -11.10657 -11.06834 -10.74269 -10.50817 -10.43782 -10.41155 -10.23773 -9.95759 -9.77425 -9.53193 -8.91653 -8.48384 -8.06563 -7.97894 -6.44154 -3.84959 1.66384 2.32700 2.45565 3.16035 3.24997 3.31063 3.47442 3.88233 4.04286 4.14895 4.26743 4.38994 4.52179 4.61500 4.66707 4.69204 4.72720 4.74129 4.88602 4.93986 4.98196 5.02722 5.08778 5.16518 5.21331 5.29408 5.39658 5.40270 5.50822 5.60537 5.64904 5.67469 5.77938 5.89197 5.97995 6.03945 6.10651 6.11403 6.16223 6.23932 6.29716 6.40934 6.61812 7.08066 7.20417 7.53037 7.62582 7.90832 8.04095 8.58809 9.15729 9.51885 10.03338 10.73535 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023904 B = 0.001756 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.049803 B =15941.090583 C =16447.472806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C 0.086 3.914 4 O -0.360 6.360 5 C 0.044 3.956 6 C 0.517 3.483 7 O -0.520 6.520 8 N -0.607 5.607 9 C 0.111 3.889 10 C -0.172 4.172 11 C 0.093 3.907 12 H 0.079 0.921 13 N -0.660 5.660 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C -0.092 4.092 27 H 0.092 0.908 28 C -0.144 4.144 29 C 0.117 3.883 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.350 0.650 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.067 0.933 47 H 0.051 0.949 48 H 0.048 0.952 49 H 0.069 0.931 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.857 -12.327 1.551 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.168 4.168 3 C 0.010 3.990 4 O -0.278 6.278 5 C -0.035 4.035 6 C 0.304 3.696 7 O -0.395 6.395 8 N -0.343 5.343 9 C -0.013 4.013 10 C -0.212 4.212 11 C -0.017 4.017 12 H 0.097 0.903 13 N -0.291 5.291 14 C -0.082 4.082 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.112 4.112 27 H 0.110 0.890 28 C -0.201 4.201 29 C -0.006 4.006 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.170 0.830 42 H 0.060 0.940 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.088 0.912 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.875 -13.524 2.331 25.824 hybrid contribution -0.231 1.476 -1.224 1.932 sum -22.106 -12.048 1.107 25.201 Atomic orbital electron populations 1.23848 0.95486 1.02372 0.99932 1.22711 0.95616 0.98166 1.00301 1.21631 0.88702 0.96291 0.92380 1.88045 1.44331 1.34956 1.60486 1.22261 0.93225 0.89220 0.98841 1.20141 0.82323 0.83574 0.83576 1.90727 1.72163 1.26590 1.49985 1.48030 1.31358 1.14318 1.40619 1.21734 0.98055 0.85487 0.96025 1.22783 0.95533 1.02818 1.00049 1.21572 0.87455 0.96771 0.95934 0.90300 1.60185 1.29307 1.09235 1.30399 1.21710 0.96383 0.89027 1.01089 1.19828 0.88646 0.83754 0.85242 1.90528 1.55790 1.45312 1.55082 1.41865 1.18210 1.05537 1.54432 1.19708 0.94316 0.92829 1.36083 0.87933 1.25254 0.99679 0.95161 0.97794 1.69609 1.37320 0.99778 1.47629 0.85859 0.81608 0.77892 0.78953 1.20446 1.20914 1.19392 1.21548 0.96257 0.94596 0.98787 0.88973 1.21788 1.01891 0.98014 0.98418 1.21844 0.85468 1.03503 0.89760 0.88394 0.87655 0.86366 0.91994 0.92523 0.90172 0.90256 0.90132 0.90713 0.90596 0.90389 0.82956 0.93974 0.89649 0.77495 0.91885 0.91363 0.93025 0.93258 0.91237 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 14.31 29.01 0.42 -0.60 16 2 C -0.15 -1.08 9.89 -36.03 -0.36 -1.43 16 3 C 0.09 0.61 6.35 36.01 0.23 0.84 16 4 O -0.36 -3.82 9.86 -55.14 -0.54 -4.37 16 5 C 0.04 0.36 4.76 36.01 0.17 0.54 16 6 C 0.52 5.81 7.78 -10.98 -0.09 5.73 16 7 O -0.52 -8.12 15.91 -14.35 -0.23 -8.35 16 8 N -0.61 -5.61 2.40 -172.51 -0.41 -6.03 16 9 C 0.11 0.75 6.34 -3.71 -0.02 0.73 16 10 C -0.17 -1.48 4.99 -26.61 -0.13 -1.61 16 11 C 0.09 1.00 2.13 -67.67 -0.14 0.86 16 12 H 0.08 0.81 7.80 -51.93 -0.40 0.41 16 13 N -0.66 -9.74 5.43 -107.94 -0.59 -10.32 16 14 C 0.05 0.83 5.96 -4.98 -0.03 0.80 16 15 C 0.44 10.06 7.82 -10.99 -0.09 9.97 16 16 O -0.58 -15.53 15.78 5.55 0.09 -15.44 16 17 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 18 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.15 13.05 55.50 0.72 -23.42 16 22 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C -0.09 -0.97 2.91 -90.29 -0.26 -1.24 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 C -0.14 -1.64 8.47 37.16 0.31 -1.33 16 29 C 0.12 1.14 5.87 -3.50 -0.02 1.12 16 30 H 0.10 0.44 7.90 -52.49 -0.41 0.03 16 31 H 0.11 0.48 8.06 -52.49 -0.42 0.05 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.31 7.86 -51.93 -0.41 -0.09 16 35 H 0.08 0.49 7.69 -51.93 -0.40 0.09 16 36 H 0.08 0.45 7.94 -51.93 -0.41 0.04 16 37 H 0.08 0.38 5.93 -51.93 -0.31 0.08 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.71 6.34 -51.93 -0.33 0.38 16 40 H 0.08 0.66 7.43 -51.93 -0.39 0.27 16 41 H 0.35 5.48 7.46 -39.29 -0.29 5.19 16 42 H 0.04 0.61 7.41 -51.93 -0.39 0.22 16 43 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 44 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 45 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 46 H 0.07 0.87 7.25 -51.93 -0.38 0.50 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.05 0.55 5.97 -51.93 -0.31 0.24 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.09 1.07 7.00 -51.93 -0.36 0.71 16 LS Contribution 403.58 15.07 6.08 6.08 Total: -1.00 -34.19 403.58 -8.21 -42.40 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -8.00 Total: 11.18 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -0.25 Total: 6.48 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.33 Total: -53.78 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.68 Total: -28.16 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.19 -8.21 -42.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482420046.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.420 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds