Wall clock time and date at job start Sat Apr 11 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99728 * 2 1 4 4 O 1.42903 * 109.46878 * 134.99713 * 3 2 1 5 5 C 1.42899 * 113.99629 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47140 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00000 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00301 * 180.02562 * 6 5 4 9 9 C 1.46925 * 120.62759 * 359.97438 * 8 6 5 10 10 C 1.53194 * 108.77801 * 233.58912 * 9 8 6 11 11 C 1.53039 * 109.31136 * 305.37006 * 10 9 8 12 12 H 1.09005 * 109.46334 * 301.35566 * 11 10 9 13 13 N 1.46904 * 109.46348 * 181.38395 * 11 10 9 14 14 C 1.46898 * 110.99877 * 84.99377 * 13 11 10 15 15 C 1.50704 * 109.47082 * 180.02562 * 14 13 11 16 16 O 1.21290 * 119.99754 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99691 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99690 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99720 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00211 * 179.97438 * 18 17 15 21 21 N 1.31418 * 119.99948 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00217 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.47489 * 89.99911 * 22 20 18 24 24 H 1.48504 * 109.46886 * 209.99989 * 22 20 18 25 25 H 1.48501 * 109.46672 * 329.99621 * 22 20 18 26 26 C 1.53038 * 109.53930 * 61.36194 * 11 10 9 27 27 H 1.09004 * 109.49693 * 178.65295 * 26 11 10 28 28 C 1.52999 * 109.49787 * 58.58829 * 26 11 10 29 29 C 1.46924 * 120.63024 * 179.71865 * 8 6 5 30 30 H 1.07994 * 120.00340 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99510 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.00120 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47060 * 254.99843 * 3 2 1 34 34 H 1.09001 * 109.47380 * 14.99931 * 3 2 1 35 35 H 1.09007 * 109.47484 * 299.99646 * 5 4 3 36 36 H 1.09004 * 109.47459 * 59.99983 * 5 4 3 37 37 H 1.09002 * 109.58926 * 353.38020 * 9 8 6 38 38 H 1.09007 * 109.58355 * 113.65889 * 9 8 6 39 39 H 1.08996 * 109.49296 * 65.31738 * 10 9 8 40 40 H 1.08995 * 109.50011 * 185.41854 * 10 9 8 41 41 H 1.00903 * 110.99701 * 321.04983 * 13 11 10 42 42 H 1.09000 * 109.47662 * 300.00670 * 14 13 11 43 43 H 1.09002 * 109.46688 * 60.00609 * 14 13 11 44 44 H 0.97004 * 120.00652 * 0.02562 * 17 15 14 45 45 H 0.96991 * 120.00159 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.47078 * 60.00169 * 28 26 11 47 47 H 1.09000 * 109.46996 * 179.97438 * 28 26 11 48 48 H 1.08996 * 109.46864 * 300.00094 * 28 26 11 49 49 H 1.09002 * 109.58962 * 246.19729 * 29 8 6 50 50 H 1.09001 * 109.58789 * 6.62726 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9083 2.4350 1.0321 6 6 4.9945 2.2566 2.0613 7 8 5.0897 1.2105 2.6675 8 7 5.8597 3.2600 2.3089 9 6 5.7569 4.5332 1.5830 10 6 7.1151 4.8509 0.9497 11 6 8.1959 4.8304 2.0330 12 1 7.9510 5.5608 2.8042 13 7 9.4948 5.1673 1.4350 14 6 9.6807 6.6228 1.3654 15 6 11.0206 6.9291 0.7474 16 8 11.7487 6.0239 0.3987 17 7 11.4097 8.2088 0.5821 18 6 12.6284 8.4874 0.0194 19 1 13.2764 7.6814 -0.2918 20 6 13.0295 9.8068 -0.1515 21 7 12.2403 10.7875 0.2258 22 14 14.6897 10.1864 -0.9189 23 1 14.5395 10.3020 -2.3917 24 1 15.2065 11.4667 -0.3721 25 1 15.6428 9.0925 -0.6027 26 6 8.2685 3.4351 2.6572 27 1 9.0547 3.4146 3.4120 28 6 8.5780 2.4045 1.5695 29 6 6.9201 3.1032 3.3137 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8500 -0.9352 0.0004 33 1 2.4755 1.4868 -0.9927 34 1 1.3855 2.1161 0.2660 35 1 4.3587 2.6397 0.0608 36 1 3.2688 3.2697 1.3192 37 1 5.0005 4.4490 0.8026 38 1 5.4798 5.3276 2.2761 39 1 7.3464 4.1034 0.1909 40 1 7.0799 5.8384 0.4895 41 1 9.5931 4.7462 0.5233 42 1 8.8908 7.0613 0.7555 43 1 9.6392 7.0427 2.3704 44 1 10.8275 8.9327 0.8613 45 1 12.5200 11.7085 0.1062 46 1 9.5338 2.6440 1.1035 47 1 8.6300 1.4109 2.0147 48 1 7.7910 2.4245 0.8157 49 1 6.7387 3.7836 4.1457 50 1 6.9316 2.0751 3.6755 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482420046.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:15 Heat of formation + Delta-G solvation = -113.937553 kcal Electronic energy + Delta-G solvation = -29368.935848 eV Core-core repulsion = 25202.918454 eV Total energy + Delta-G solvation = -4166.017394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.54038 -40.20705 -39.43466 -38.50759 -36.32206 -35.75473 -34.79809 -33.87685 -33.22278 -31.89957 -29.88245 -28.44170 -27.56855 -26.49568 -26.00615 -24.39429 -23.77306 -21.35258 -21.13041 -20.78635 -19.95574 -19.51757 -18.60854 -17.70487 -17.53457 -17.46087 -16.93294 -16.64401 -16.41147 -16.20183 -16.15524 -15.64665 -15.56351 -15.31651 -15.10900 -14.91528 -14.65340 -14.19861 -14.03620 -13.75898 -13.66050 -13.49887 -13.30874 -13.16407 -13.12627 -12.92651 -12.70579 -12.63515 -12.46222 -12.40109 -12.12172 -12.01634 -11.89010 -11.63901 -11.49335 -11.36188 -10.99582 -10.77648 -10.31017 -10.26479 -9.99262 -9.69443 -9.20040 -8.45474 -5.93721 1.18672 1.38533 1.42716 1.53155 1.54964 1.79041 2.08495 2.30195 2.90488 2.95824 3.22342 3.49867 3.53877 3.73722 3.89574 4.03207 4.04053 4.08814 4.13811 4.20668 4.23601 4.24686 4.34475 4.44829 4.46897 4.49256 4.54674 4.60194 4.63303 4.72284 4.75444 4.80331 4.83956 4.91115 4.98086 5.12621 5.17461 5.25208 5.38590 5.42519 5.55495 5.65732 5.70003 5.94220 6.07475 6.17889 6.36937 6.45386 6.62639 7.12618 7.14918 7.59245 8.15124 8.71721 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023904 B = 0.001756 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.049803 B =15941.090583 C =16447.472806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.178 4.178 3 C 0.084 3.916 4 O -0.398 6.398 5 C 0.045 3.955 6 C 0.509 3.491 7 O -0.576 6.576 8 N -0.602 5.602 9 C 0.110 3.890 10 C -0.166 4.166 11 C 0.096 3.904 12 H 0.093 0.907 13 N -0.677 5.677 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.990 3.010 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.275 1.275 26 C -0.086 4.086 27 H 0.082 0.918 28 C -0.137 4.137 29 C 0.121 3.879 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.343 0.657 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.050 0.950 47 H 0.043 0.957 48 H 0.052 0.948 49 H 0.088 0.912 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.977 -10.517 1.172 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.009 3.991 4 O -0.317 6.317 5 C -0.034 4.034 6 C 0.298 3.702 7 O -0.455 6.455 8 N -0.336 5.336 9 C -0.012 4.012 10 C -0.206 4.206 11 C -0.014 4.014 12 H 0.111 0.889 13 N -0.308 5.308 14 C -0.065 4.065 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.211 5.211 18 C -0.464 4.464 19 H 0.095 0.905 20 C -0.210 4.210 21 N -0.560 5.560 22 Si 0.814 3.186 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.200 1.200 26 C -0.106 4.106 27 H 0.100 0.900 28 C -0.195 4.195 29 C -0.002 4.002 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.162 0.838 42 H 0.090 0.910 43 H 0.122 0.878 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.071 0.929 49 H 0.106 0.894 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.027 -11.667 1.952 26.781 hybrid contribution 0.402 0.854 -1.091 1.443 sum -23.625 -10.813 0.861 25.996 Atomic orbital electron populations 1.24061 0.94987 1.03533 0.97724 1.22789 0.96355 0.98089 1.02427 1.21793 0.88313 0.96651 0.92390 1.88003 1.45497 1.36498 1.61693 1.22412 0.92744 0.89451 0.98805 1.20825 0.82919 0.82906 0.83534 1.90701 1.73781 1.28830 1.52227 1.48111 1.30438 1.14908 1.40160 1.21972 0.97636 0.84571 0.97045 1.22701 0.95646 1.03215 0.99040 1.21633 0.86357 0.96683 0.96737 0.88887 1.60144 1.32320 1.08137 1.30182 1.21557 0.92762 0.90387 1.01757 1.21012 0.90455 0.82502 0.83653 1.90499 1.57815 1.46394 1.56538 1.41925 1.17708 1.06511 1.54910 1.19647 0.95715 0.92848 1.38209 0.90541 1.25975 1.02803 0.94555 0.97710 1.69659 1.38509 1.00118 1.47672 0.84969 0.77474 0.77723 0.78431 1.19624 1.19563 1.20023 1.21468 0.96565 0.94453 0.98138 0.90005 1.21709 1.01045 0.97993 0.98724 1.21734 0.85214 1.02817 0.90460 0.86861 0.86848 0.87800 0.90751 0.90596 0.87816 0.87017 0.87238 0.88554 0.91479 0.89310 0.83806 0.91040 0.87814 0.76900 0.91331 0.93077 0.93834 0.92905 0.89350 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 14.31 67.78 0.97 -0.65 16 2 C -0.18 -2.46 9.89 25.64 0.25 -2.20 16 3 C 0.08 1.05 6.35 71.24 0.45 1.51 16 4 O -0.40 -8.03 9.86 -129.94 -1.28 -9.31 16 5 C 0.04 0.62 4.76 71.24 0.34 0.96 16 6 C 0.51 10.85 7.78 87.66 0.68 11.53 16 7 O -0.58 -18.42 15.91 16.00 0.25 -18.17 16 8 N -0.60 -9.85 2.40 -818.10 -1.96 -11.81 16 9 C 0.11 1.06 6.34 86.36 0.55 1.60 16 10 C -0.17 -2.34 4.99 30.67 0.15 -2.19 16 11 C 0.10 1.84 2.13 44.94 0.10 1.93 16 12 H 0.09 1.58 7.80 -2.38 -0.02 1.56 16 13 N -0.68 -19.17 5.43 -495.42 -2.69 -21.86 16 14 C 0.07 2.08 5.96 85.56 0.51 2.59 16 15 C 0.44 19.96 7.82 87.66 0.69 20.64 16 16 O -0.63 -34.11 15.78 -3.06 -0.05 -34.16 16 17 N -0.57 -28.51 5.29 -306.98 -1.62 -30.14 16 18 C -0.33 -18.74 9.68 84.04 0.81 -17.92 16 19 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 20 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 21 N -0.92 -48.47 13.05 21.66 0.28 -48.19 16 22 Si 0.99 42.41 29.55 68.60 2.03 44.44 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 25 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 26 C -0.09 -1.76 2.91 -10.58 -0.03 -1.79 16 27 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 28 C -0.14 -3.20 8.47 71.98 0.61 -2.59 16 29 C 0.12 2.23 5.87 86.50 0.51 2.73 16 30 H 0.11 0.73 7.90 -2.91 -0.02 0.71 16 31 H 0.11 0.87 8.06 -2.91 -0.02 0.84 16 32 H 0.10 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.62 7.86 -2.39 -0.02 0.60 16 35 H 0.10 0.92 7.69 -2.38 -0.02 0.90 16 36 H 0.11 0.79 7.94 -2.38 -0.02 0.78 16 37 H 0.11 0.48 5.93 -2.39 -0.01 0.47 16 38 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.07 1.10 6.34 -2.39 -0.02 1.08 16 40 H 0.09 1.13 7.43 -2.39 -0.02 1.11 16 41 H 0.34 10.61 7.46 -89.69 -0.67 9.94 16 42 H 0.07 1.82 7.41 -2.39 -0.02 1.80 16 43 H 0.10 2.87 8.05 -2.39 -0.02 2.85 16 44 H 0.40 18.56 7.90 -92.70 -0.73 17.83 16 45 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 46 H 0.05 1.35 7.25 -2.39 -0.02 1.34 16 47 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.05 1.17 5.97 -2.39 -0.01 1.16 16 49 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.07 1.73 7.00 -2.39 -0.02 1.71 16 Total: -1.00 -77.48 403.58 1.57 -75.92 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: -0.45 Total: 37.20 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 7.06 Total: 16.07 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -6.00 Total: -111.99 kcal Atomic # 8 Polarization: -60.56 SS G_CDS: -1.07 Total: -61.63 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -77.48 1.57 -75.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482420046.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.021 kcal (2) G-P(sol) polarization free energy of solvation -77.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds