Wall clock time and date at job start Sat Apr 11 2020 05:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99890 * 2 1 4 4 O 1.42907 * 109.46707 * 135.00218 * 3 2 1 5 5 C 1.42901 * 113.99791 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47051 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00130 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99750 * 179.97438 * 6 5 4 9 9 C 1.46919 * 120.63395 * 0.02562 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.29715 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 H 1.09000 * 109.43268 * 58.76205 * 11 10 9 13 13 N 1.46900 * 109.42051 * 178.67519 * 11 10 9 14 14 C 1.46907 * 110.99928 * 275.13331 * 13 11 10 15 15 C 1.50697 * 109.46998 * 179.97438 * 14 13 11 16 16 O 1.21292 * 120.00436 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99767 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99735 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00117 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99708 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99883 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00193 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47267 * 89.99514 * 22 20 18 24 24 H 1.48498 * 109.47075 * 209.99710 * 22 20 18 25 25 H 1.48504 * 109.47007 * 329.99536 * 22 20 18 26 26 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 27 27 H 1.09000 * 109.49784 * 181.32304 * 26 11 10 28 28 C 1.52994 * 109.52669 * 301.40520 * 26 11 10 29 29 C 1.46933 * 120.62602 * 179.97438 * 8 6 5 30 30 H 1.07998 * 120.00165 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.99830 * 359.97438 * 1 2 3 32 32 H 1.07993 * 119.99808 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47184 * 15.00497 * 3 2 1 34 34 H 1.08998 * 109.47320 * 255.00108 * 3 2 1 35 35 H 1.09003 * 109.47619 * 60.00068 * 5 4 3 36 36 H 1.09001 * 109.47419 * 299.99872 * 5 4 3 37 37 H 1.09002 * 109.58751 * 246.15665 * 9 8 6 38 38 H 1.08996 * 109.58750 * 6.43850 * 9 8 6 39 39 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 40 40 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 41 41 H 1.00900 * 111.00301 * 151.17769 * 13 11 10 42 42 H 1.09005 * 109.46585 * 299.99650 * 14 13 11 43 43 H 1.08994 * 109.47323 * 59.99764 * 14 13 11 44 44 H 0.96991 * 120.00394 * 359.97438 * 17 15 14 45 45 H 0.96999 * 120.00145 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.47642 * 179.85351 * 28 26 11 47 47 H 1.09000 * 109.47515 * 299.85664 * 28 26 11 48 48 H 1.09007 * 109.46694 * 59.85449 * 28 26 11 49 49 H 1.08994 * 109.58580 * 353.42544 * 29 8 6 50 50 H 1.09006 * 109.57831 * 113.70037 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9077 2.4352 1.0329 6 6 4.9941 2.2566 2.0620 7 8 5.0898 1.2101 2.6675 8 7 5.8594 3.2599 2.3095 9 6 5.7559 4.5336 1.5846 10 6 5.6821 5.6779 2.6005 11 6 6.8837 5.5869 3.5489 12 1 7.8065 5.6439 2.9716 13 7 6.8360 6.7002 4.5060 14 6 7.4505 7.9083 3.9394 15 6 7.3825 9.0265 4.9473 16 8 6.8719 8.8360 6.0310 17 7 7.8891 10.2382 4.6447 18 6 7.8267 11.2557 5.5615 19 1 7.3721 11.0861 6.5264 20 6 8.3494 12.5048 5.2497 21 7 8.2901 13.4799 6.1287 22 14 9.1364 12.7980 3.5812 23 1 8.1037 13.2659 2.6221 24 1 10.1972 13.8292 3.7086 25 1 9.7339 11.5317 3.0864 26 6 6.8388 4.2592 4.3086 27 1 7.6806 4.2065 4.9991 28 6 5.5285 4.1626 5.0925 29 6 6.9234 3.1010 3.3102 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 1.3855 2.1160 0.2661 34 1 2.4755 1.4868 -0.9926 35 1 3.2678 3.2694 1.3207 36 1 4.3580 2.6408 0.0618 37 1 6.6319 4.6648 0.9494 38 1 4.8558 4.5321 0.9699 39 1 5.7007 6.6327 2.0750 40 1 4.7591 5.5959 3.1745 41 1 7.2750 6.4463 5.3783 42 1 8.4924 7.7042 3.6923 43 1 6.9135 8.2000 3.0369 44 1 8.2977 10.3905 3.7784 45 1 8.6547 14.3520 5.9109 46 1 5.4963 3.2156 5.6312 47 1 5.4685 4.9870 5.8031 48 1 4.6871 4.2164 4.4016 49 1 6.7923 2.1552 3.8359 50 1 7.8947 3.1125 2.8156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482420047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:20 Heat of formation + Delta-G solvation = -82.057287 kcal Electronic energy + Delta-G solvation = -29438.471637 eV Core-core repulsion = 25273.836675 eV Total energy + Delta-G solvation = -4164.634962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.76429 -39.00233 -38.33713 -37.67444 -35.24271 -34.29478 -33.97349 -32.96454 -31.69390 -31.15433 -29.21580 -27.27553 -26.79374 -25.68775 -24.55625 -23.68437 -22.51583 -20.73963 -20.22989 -19.46040 -18.79174 -18.27072 -17.87353 -16.93325 -16.80349 -16.40307 -15.94146 -15.56826 -15.41254 -15.22441 -15.15195 -14.80692 -14.49021 -14.09620 -14.02482 -13.68260 -13.58212 -13.32756 -13.09662 -12.84698 -12.65626 -12.56631 -12.47080 -12.21786 -12.08316 -11.90635 -11.78537 -11.49793 -11.42265 -11.31905 -11.17649 -10.71148 -10.62449 -10.50382 -10.44358 -10.00170 -9.96779 -9.77898 -9.59982 -8.95331 -8.60900 -8.22773 -8.17688 -6.33521 -3.85108 1.66497 2.30174 2.42933 2.99125 3.03748 3.12304 3.46331 3.71113 3.98052 4.07600 4.13764 4.38413 4.49304 4.57594 4.60589 4.68662 4.71950 4.73098 4.76993 4.87196 4.90565 4.97893 5.04231 5.16822 5.17868 5.25391 5.34052 5.40496 5.48222 5.52142 5.56977 5.60752 5.74978 5.75996 5.86335 5.95421 5.97459 6.11212 6.13370 6.17204 6.21977 6.40086 6.60829 7.04939 7.08170 7.53004 7.56041 7.88099 8.12128 8.57182 8.92607 9.39863 9.80123 10.79622 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.001869 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.377819 B =14980.146296 C =15467.093831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.086 3.914 4 O -0.360 6.360 5 C 0.044 3.956 6 C 0.518 3.482 7 O -0.520 6.520 8 N -0.607 5.607 9 C 0.105 3.895 10 C -0.128 4.128 11 C 0.093 3.907 12 H 0.044 0.956 13 N -0.661 5.661 14 C 0.048 3.952 15 C 0.449 3.551 16 O -0.564 6.564 17 N -0.591 5.591 18 C -0.306 4.306 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.107 4.107 27 H 0.083 0.917 28 C -0.139 4.139 29 C 0.120 3.880 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.353 0.647 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.048 0.952 47 H 0.071 0.929 48 H 0.054 0.946 49 H 0.096 0.904 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.249 -22.465 -17.446 29.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.169 4.169 3 C 0.010 3.990 4 O -0.278 6.278 5 C -0.035 4.035 6 C 0.305 3.695 7 O -0.395 6.395 8 N -0.343 5.343 9 C -0.018 4.018 10 C -0.167 4.167 11 C -0.017 4.017 12 H 0.062 0.938 13 N -0.295 5.295 14 C -0.085 4.085 15 C 0.235 3.765 16 O -0.446 6.446 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.126 4.126 27 H 0.101 0.899 28 C -0.196 4.196 29 C -0.002 4.002 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.136 0.864 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.173 0.827 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.114 0.886 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.104 -22.912 -16.360 29.296 hybrid contribution 1.624 0.709 -1.544 2.350 sum -6.480 -22.202 -17.904 29.249 Atomic orbital electron populations 1.23863 0.95502 1.02422 0.99720 1.22697 0.95621 0.98114 1.00494 1.21630 0.88728 0.96363 0.92261 1.88044 1.44361 1.34870 1.60571 1.22258 0.93301 0.89330 0.98651 1.20153 0.82090 0.83658 0.83616 1.90726 1.72013 1.26795 1.49959 1.48005 1.31518 1.14212 1.40573 1.21852 1.02569 0.82902 0.94494 1.22061 1.00250 0.97479 0.96881 1.21536 0.96826 0.90014 0.93355 0.93829 1.60084 1.60893 1.02488 1.05993 1.21756 0.97359 0.91307 0.98030 1.19718 0.84170 0.83545 0.89060 1.90571 1.47421 1.82151 1.24418 1.42209 1.54062 1.10565 1.16199 1.19434 1.37154 0.88181 0.98665 0.86294 1.25040 0.97769 0.95433 0.97908 1.69621 1.45339 1.02749 1.34384 0.86668 0.79952 0.78641 0.84072 1.19613 1.20195 1.19571 1.21660 1.00266 0.93729 0.96980 0.89884 1.21750 0.96032 1.01790 1.00054 1.21655 0.89301 0.99869 0.89420 0.87653 0.88333 0.86423 0.92424 0.92073 0.90027 0.90241 0.90948 0.89869 0.90361 0.89977 0.82685 0.93841 0.89604 0.79738 0.91607 0.93270 0.91000 0.92675 0.88617 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.02 14.31 29.01 0.42 -0.60 16 2 C -0.15 -1.07 9.89 -36.03 -0.36 -1.43 16 3 C 0.09 0.60 6.35 36.00 0.23 0.83 16 4 O -0.36 -3.76 9.86 -55.14 -0.54 -4.31 16 5 C 0.04 0.35 4.76 36.01 0.17 0.53 16 6 C 0.52 5.69 7.78 -10.98 -0.09 5.61 16 7 O -0.52 -7.99 15.91 -14.35 -0.23 -8.22 16 8 N -0.61 -5.44 2.41 -172.79 -0.42 -5.85 16 9 C 0.11 0.69 6.33 -3.71 -0.02 0.67 16 10 C -0.13 -1.13 5.27 -26.45 -0.14 -1.27 16 11 C 0.09 0.95 2.15 -67.52 -0.15 0.80 16 12 H 0.04 0.42 7.80 -51.93 -0.40 0.01 16 13 N -0.66 -9.26 5.25 -107.78 -0.57 -9.82 16 14 C 0.05 0.74 5.96 -4.97 -0.03 0.71 16 15 C 0.45 9.84 7.82 -10.99 -0.09 9.75 16 16 O -0.56 -14.79 15.78 5.55 0.09 -14.70 16 17 N -0.59 -13.70 5.09 -10.96 -0.06 -13.76 16 18 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 19 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 20 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.48 13.96 55.50 0.77 -24.71 16 22 Si 0.88 18.98 27.74 -169.99 -4.71 14.26 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 26 C -0.11 -1.03 2.58 -90.53 -0.23 -1.27 16 27 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 28 C -0.14 -1.55 8.56 37.15 0.32 -1.23 16 29 C 0.12 1.11 5.82 -3.73 -0.02 1.08 16 30 H 0.11 0.48 8.06 -52.49 -0.42 0.06 16 31 H 0.10 0.47 7.90 -52.48 -0.41 0.05 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.06 0.33 7.86 -51.93 -0.41 -0.08 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.50 7.70 -51.93 -0.40 0.10 16 36 H 0.08 0.42 7.94 -51.93 -0.41 0.01 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.38 5.93 -51.93 -0.31 0.07 16 39 H 0.08 0.67 7.43 -51.93 -0.39 0.29 16 40 H 0.08 0.84 6.34 -51.93 -0.33 0.51 16 41 H 0.35 5.27 7.96 -39.29 -0.31 4.96 16 42 H 0.04 0.59 8.05 -51.93 -0.42 0.17 16 43 H 0.09 1.15 7.42 -51.93 -0.39 0.77 16 44 H 0.37 7.48 5.76 -40.82 -0.24 7.25 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.91 7.59 -51.93 -0.39 0.52 16 48 H 0.05 0.64 5.98 -51.92 -0.31 0.32 16 49 H 0.10 1.03 7.00 -51.93 -0.36 0.66 16 50 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 401.13 15.07 6.04 6.04 Total: -1.00 -35.57 401.13 -7.85 -43.41 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -8.00 Total: 11.12 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -0.24 Total: 6.53 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.26 Total: -54.15 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.68 Total: -27.22 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.26 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.57 -7.85 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482420047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.642 kcal (2) G-P(sol) polarization free energy of solvation -35.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds