Wall clock time and date at job start Sat Apr 11 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99890 * 2 1 4 4 O 1.42907 * 109.46707 * 135.00218 * 3 2 1 5 5 C 1.42901 * 113.99791 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47051 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00130 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99750 * 179.97438 * 6 5 4 9 9 C 1.46919 * 120.63395 * 0.02562 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.29715 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 H 1.09000 * 109.43268 * 58.76205 * 11 10 9 13 13 N 1.46900 * 109.42051 * 178.67519 * 11 10 9 14 14 C 1.46907 * 110.99928 * 275.13331 * 13 11 10 15 15 C 1.50697 * 109.46998 * 179.97438 * 14 13 11 16 16 O 1.21292 * 120.00436 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99767 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99735 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00117 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99708 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99883 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00193 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47267 * 89.99514 * 22 20 18 24 24 H 1.48498 * 109.47075 * 209.99710 * 22 20 18 25 25 H 1.48504 * 109.47007 * 329.99536 * 22 20 18 26 26 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 27 27 H 1.09000 * 109.49784 * 181.32304 * 26 11 10 28 28 C 1.52994 * 109.52669 * 301.40520 * 26 11 10 29 29 C 1.46933 * 120.62602 * 179.97438 * 8 6 5 30 30 H 1.07998 * 120.00165 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.99830 * 359.97438 * 1 2 3 32 32 H 1.07993 * 119.99808 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47184 * 15.00497 * 3 2 1 34 34 H 1.08998 * 109.47320 * 255.00108 * 3 2 1 35 35 H 1.09003 * 109.47619 * 60.00068 * 5 4 3 36 36 H 1.09001 * 109.47419 * 299.99872 * 5 4 3 37 37 H 1.09002 * 109.58751 * 246.15665 * 9 8 6 38 38 H 1.08996 * 109.58750 * 6.43850 * 9 8 6 39 39 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 40 40 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 41 41 H 1.00900 * 111.00301 * 151.17769 * 13 11 10 42 42 H 1.09005 * 109.46585 * 299.99650 * 14 13 11 43 43 H 1.08994 * 109.47323 * 59.99764 * 14 13 11 44 44 H 0.96991 * 120.00394 * 359.97438 * 17 15 14 45 45 H 0.96999 * 120.00145 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.47642 * 179.85351 * 28 26 11 47 47 H 1.09000 * 109.47515 * 299.85664 * 28 26 11 48 48 H 1.09007 * 109.46694 * 59.85449 * 28 26 11 49 49 H 1.08994 * 109.58580 * 353.42544 * 29 8 6 50 50 H 1.09006 * 109.57831 * 113.70037 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9077 2.4352 1.0329 6 6 4.9941 2.2566 2.0620 7 8 5.0898 1.2101 2.6675 8 7 5.8594 3.2599 2.3095 9 6 5.7559 4.5336 1.5846 10 6 5.6821 5.6779 2.6005 11 6 6.8837 5.5869 3.5489 12 1 7.8065 5.6439 2.9716 13 7 6.8360 6.7002 4.5060 14 6 7.4505 7.9083 3.9394 15 6 7.3825 9.0265 4.9473 16 8 6.8719 8.8360 6.0310 17 7 7.8891 10.2382 4.6447 18 6 7.8267 11.2557 5.5615 19 1 7.3721 11.0861 6.5264 20 6 8.3494 12.5048 5.2497 21 7 8.2901 13.4799 6.1287 22 14 9.1364 12.7980 3.5812 23 1 8.1037 13.2659 2.6221 24 1 10.1972 13.8292 3.7086 25 1 9.7339 11.5317 3.0864 26 6 6.8388 4.2592 4.3086 27 1 7.6806 4.2065 4.9991 28 6 5.5285 4.1626 5.0925 29 6 6.9234 3.1010 3.3102 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 1.3855 2.1160 0.2661 34 1 2.4755 1.4868 -0.9926 35 1 3.2678 3.2694 1.3207 36 1 4.3580 2.6408 0.0618 37 1 6.6319 4.6648 0.9494 38 1 4.8558 4.5321 0.9699 39 1 5.7007 6.6327 2.0750 40 1 4.7591 5.5959 3.1745 41 1 7.2750 6.4463 5.3783 42 1 8.4924 7.7042 3.6923 43 1 6.9135 8.2000 3.0369 44 1 8.2977 10.3905 3.7784 45 1 8.6547 14.3520 5.9109 46 1 5.4963 3.2156 5.6312 47 1 5.4685 4.9870 5.8031 48 1 4.6871 4.2164 4.4016 49 1 6.7923 2.1552 3.8359 50 1 7.8947 3.1125 2.8156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482420047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:19 Heat of formation + Delta-G solvation = -108.809413 kcal Electronic energy + Delta-G solvation = -29439.631696 eV Core-core repulsion = 25273.836675 eV Total energy + Delta-G solvation = -4165.795021 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.52408 -40.31548 -39.45015 -38.49446 -36.34390 -35.79320 -34.79157 -33.91043 -33.66334 -31.98282 -29.88898 -28.62006 -27.55522 -26.44659 -25.89708 -24.58618 -23.45113 -21.38212 -21.26587 -20.81210 -20.29791 -19.41954 -18.58226 -17.71656 -17.57161 -17.36381 -17.06144 -16.80557 -16.49137 -16.24623 -15.98954 -15.78754 -15.44804 -15.27954 -15.12348 -14.80597 -14.54937 -14.43470 -14.11405 -13.98117 -13.86801 -13.60747 -13.33154 -13.19153 -13.08399 -12.91207 -12.74202 -12.59494 -12.41502 -12.39172 -12.13097 -11.96117 -11.88539 -11.52746 -11.48126 -11.30265 -10.99304 -10.74828 -10.39616 -10.25974 -10.22845 -9.68179 -9.25645 -8.39629 -6.00762 1.18870 1.31470 1.37726 1.46537 1.53780 1.79945 1.99276 2.24959 2.74809 2.93247 3.16983 3.38293 3.51397 3.75740 3.78007 4.02198 4.05315 4.13120 4.17467 4.18200 4.22567 4.26213 4.29739 4.44708 4.47648 4.51009 4.53135 4.60801 4.61427 4.70840 4.75368 4.79508 4.84019 4.97601 4.98254 5.09053 5.16122 5.31687 5.46589 5.54191 5.56118 5.66043 5.70386 5.93956 6.08170 6.13543 6.37915 6.41968 6.62082 6.90549 7.13252 7.42487 8.00069 8.78170 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.001869 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.377819 B =14980.146296 C =15467.093831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.177 4.177 3 C 0.084 3.916 4 O -0.398 6.398 5 C 0.045 3.955 6 C 0.510 3.490 7 O -0.577 6.577 8 N -0.603 5.603 9 C 0.106 3.894 10 C -0.127 4.127 11 C 0.095 3.905 12 H 0.067 0.933 13 N -0.680 5.680 14 C 0.064 3.936 15 C 0.447 3.553 16 O -0.616 6.616 17 N -0.591 5.591 18 C -0.330 4.330 19 H 0.052 0.948 20 C -0.017 4.017 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.256 1.256 24 H -0.278 1.278 25 H -0.228 1.228 26 C -0.100 4.100 27 H 0.086 0.914 28 C -0.133 4.133 29 C 0.122 3.878 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.343 0.657 42 H 0.077 0.923 43 H 0.117 0.883 44 H 0.390 0.610 45 H 0.278 0.722 46 H 0.041 0.959 47 H 0.051 0.949 48 H 0.050 0.950 49 H 0.074 0.926 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.342 -22.637 -22.313 32.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.195 4.195 3 C 0.008 3.992 4 O -0.317 6.317 5 C -0.034 4.034 6 C 0.298 3.702 7 O -0.456 6.456 8 N -0.337 5.337 9 C -0.016 4.016 10 C -0.165 4.165 11 C -0.014 4.014 12 H 0.085 0.915 13 N -0.313 5.313 14 C -0.068 4.068 15 C 0.236 3.764 16 O -0.501 6.501 17 N -0.233 5.233 18 C -0.459 4.459 19 H 0.071 0.929 20 C -0.215 4.215 21 N -0.577 5.577 22 Si 0.787 3.213 23 H -0.181 1.181 24 H -0.203 1.203 25 H -0.152 1.152 26 C -0.120 4.120 27 H 0.105 0.895 28 C -0.190 4.190 29 C -0.001 4.001 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.162 0.838 42 H 0.095 0.905 43 H 0.135 0.865 44 H 0.226 0.774 45 H 0.088 0.912 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.092 0.908 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.200 -23.083 -21.268 32.203 hybrid contribution 1.236 0.719 0.130 1.436 sum -5.964 -22.364 -21.138 31.346 Atomic orbital electron populations 1.24063 0.95133 1.03451 0.97921 1.22796 0.96272 0.98172 1.02238 1.21791 0.88310 0.96510 0.92544 1.88001 1.45505 1.36369 1.61838 1.22416 0.92689 0.89165 0.99171 1.20825 0.82571 0.83131 0.83625 1.90700 1.73557 1.29138 1.52230 1.48109 1.30680 1.14739 1.40126 1.22075 1.05192 0.80416 0.93904 1.22054 0.98519 0.99053 0.96912 1.21645 0.98592 0.88309 0.92855 0.91533 1.60117 1.61111 1.03452 1.06581 1.21683 1.00009 0.88899 0.96208 1.21101 0.81464 0.84372 0.89507 1.90554 1.49032 1.83166 1.27317 1.42025 1.54993 1.10067 1.16216 1.19002 1.38499 0.90613 0.97782 0.92939 1.26150 0.97707 0.94125 1.03512 1.69814 1.46600 1.03603 1.37683 0.85339 0.78828 0.80158 0.77004 1.18054 1.20288 1.15164 1.21599 0.99193 0.94142 0.97062 0.89548 1.21660 0.97172 1.00477 0.99689 1.21596 0.90508 0.98406 0.89553 0.86822 0.87123 0.87524 0.91091 0.90235 0.87882 0.86877 0.88402 0.87196 0.89203 0.91966 0.83786 0.90544 0.86497 0.77416 0.91210 0.93988 0.93026 0.93078 0.90767 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 14.31 67.78 0.97 -0.74 16 2 C -0.18 -2.39 9.89 25.64 0.25 -2.13 16 3 C 0.08 1.03 6.35 71.23 0.45 1.48 16 4 O -0.40 -7.88 9.86 -129.94 -1.28 -9.16 16 5 C 0.04 0.60 4.76 71.24 0.34 0.94 16 6 C 0.51 10.53 7.78 87.66 0.68 11.21 16 7 O -0.58 -18.07 15.91 16.00 0.25 -17.82 16 8 N -0.60 -9.27 2.41 -818.98 -1.98 -11.24 16 9 C 0.11 0.91 6.33 86.36 0.55 1.46 16 10 C -0.13 -1.76 5.27 30.78 0.16 -1.59 16 11 C 0.10 1.63 2.15 45.04 0.10 1.73 16 12 H 0.07 0.91 7.80 -2.39 -0.02 0.89 16 13 N -0.68 -17.68 5.25 -494.91 -2.60 -20.28 16 14 C 0.06 1.73 5.96 85.55 0.51 2.24 16 15 C 0.45 19.30 7.82 87.66 0.69 19.98 16 16 O -0.62 -33.49 15.78 -3.07 -0.05 -33.54 16 17 N -0.59 -26.86 5.09 -306.98 -1.56 -28.42 16 18 C -0.33 -19.05 10.16 84.04 0.85 -18.20 16 19 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 20 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 21 N -0.94 -56.03 13.96 21.66 0.30 -55.73 16 22 Si 0.97 37.56 27.74 68.60 1.90 39.47 16 23 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 24 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 25 H -0.23 -7.28 6.52 99.48 0.65 -6.64 16 26 C -0.10 -1.80 2.58 -10.73 -0.03 -1.83 16 27 H 0.09 1.50 8.10 -2.39 -0.02 1.48 16 28 C -0.13 -3.01 8.56 71.98 0.62 -2.40 16 29 C 0.12 2.04 5.82 86.35 0.50 2.54 16 30 H 0.11 0.90 8.06 -2.91 -0.02 0.88 16 31 H 0.11 0.83 7.90 -2.91 -0.02 0.80 16 32 H 0.11 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.07 0.64 7.86 -2.39 -0.02 0.62 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.10 0.90 7.70 -2.39 -0.02 0.89 16 36 H 0.11 0.72 7.94 -2.39 -0.02 0.70 16 37 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.11 0.41 5.93 -2.39 -0.01 0.39 16 39 H 0.09 1.09 7.43 -2.39 -0.02 1.07 16 40 H 0.06 1.14 6.34 -2.39 -0.02 1.12 16 41 H 0.34 10.05 7.96 -89.69 -0.71 9.34 16 42 H 0.08 1.64 8.05 -2.38 -0.02 1.62 16 43 H 0.12 2.51 7.42 -2.39 -0.02 2.49 16 44 H 0.39 14.38 5.76 -92.71 -0.53 13.84 16 45 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 46 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.05 1.37 7.59 -2.39 -0.02 1.35 16 48 H 0.05 1.18 5.98 -2.38 -0.01 1.17 16 49 H 0.07 1.60 7.00 -2.39 -0.02 1.58 16 50 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -86.61 401.13 1.75 -84.86 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: -0.35 Total: 37.60 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 7.11 Total: 14.25 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -5.84 Total: -115.67 kcal Atomic # 8 Polarization: -59.44 SS G_CDS: -1.07 Total: -60.52 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 1.90 Total: 39.47 kcal Total: -86.61 1.75 -84.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482420047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.946 kcal (2) G-P(sol) polarization free energy of solvation -86.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds