Wall clock time and date at job start Sat Apr 11 2020 05:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 115.55090 * 2 1 4 4 C 1.53077 * 117.53361 * 214.28915 * 2 1 3 5 5 C 1.53004 * 117.50034 * 145.67283 * 2 1 3 6 6 H 1.08999 * 117.50034 * 215.02503 * 5 2 1 7 7 C 1.50703 * 117.49766 * 0.02767 * 5 2 1 8 8 O 1.21277 * 119.99822 * 359.90792 * 7 5 2 9 9 N 1.34776 * 119.99747 * 179.91460 * 7 5 2 10 10 C 1.46494 * 119.99933 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.47542 * 174.56249 * 10 9 7 12 12 N 1.46905 * 109.54065 * 305.47845 * 11 10 9 13 13 C 1.46904 * 110.99987 * 305.28879 * 12 11 10 14 14 C 1.50691 * 109.47263 * 184.15545 * 13 12 11 15 15 O 1.21293 * 120.00216 * 0.02562 * 14 13 12 16 16 N 1.34781 * 120.00036 * 180.02562 * 14 13 12 17 17 C 1.37096 * 119.99950 * 179.72571 * 16 14 13 18 18 H 1.08004 * 120.00017 * 0.27348 * 17 16 14 19 19 C 1.38945 * 119.99954 * 180.27318 * 17 16 14 20 20 N 1.31413 * 119.99975 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00096 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46897 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47036 * 120.00183 * 21 19 17 24 24 H 1.48497 * 109.47330 * 240.00180 * 21 19 17 25 25 C 1.53179 * 109.54320 * 65.64832 * 11 10 9 26 26 C 1.53283 * 109.06255 * 176.85405 * 25 11 10 27 27 O 1.42900 * 109.45924 * 302.44742 * 26 25 11 28 28 C 1.42900 * 114.09838 * 61.16450 * 27 26 25 29 29 C 1.53099 * 109.41253 * 298.83405 * 28 27 26 30 30 H 1.09004 * 109.47345 * 274.32490 * 1 2 3 31 31 H 1.09001 * 109.47597 * 34.32534 * 1 2 3 32 32 H 1.09005 * 109.47258 * 154.32568 * 1 2 3 33 33 H 1.08997 * 117.49344 * 145.04093 * 4 2 1 34 34 H 1.08999 * 117.51303 * 0.02562 * 4 2 1 35 35 H 0.97003 * 120.00003 * 359.97438 * 9 7 5 36 36 H 1.09004 * 109.47188 * 54.56082 * 10 9 7 37 37 H 1.08997 * 109.47304 * 294.56513 * 10 9 7 38 38 H 1.00896 * 111.00459 * 69.23995 * 12 11 10 39 39 H 1.09008 * 109.47133 * 64.15552 * 13 12 11 40 40 H 1.09002 * 109.47196 * 304.16210 * 13 12 11 41 41 H 0.96999 * 120.00357 * 359.97438 * 16 14 13 42 42 H 0.97004 * 119.99690 * 180.02562 * 20 19 17 43 43 H 1.08990 * 109.52240 * 296.84897 * 25 11 10 44 44 H 1.09004 * 109.51877 * 57.03586 * 25 11 10 45 45 H 1.09003 * 109.45492 * 182.45021 * 26 25 11 46 46 H 1.08997 * 109.45647 * 62.44515 * 26 25 11 47 47 H 1.09003 * 109.48566 * 178.85656 * 28 27 26 48 48 H 1.08999 * 109.48595 * 58.81658 * 28 27 26 49 49 H 1.08995 * 109.52169 * 297.70567 * 29 28 27 50 50 H 1.09001 * 109.52215 * 177.51674 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2376 -1.1215 -0.7647 5 6 2.2365 -1.1208 0.7653 6 1 3.1711 -0.8746 1.2692 7 6 1.3720 -2.1406 1.4609 8 8 0.1639 -2.0526 1.4023 9 7 1.9416 -3.1503 2.1483 10 6 1.1014 -4.1414 2.8249 11 6 1.9849 -5.2448 3.4103 12 7 2.8327 -5.8090 2.3515 13 6 2.0214 -6.2694 1.2167 14 6 2.9125 -6.9323 0.1982 15 8 4.1061 -7.0136 0.3982 16 7 2.3833 -7.4348 -0.9349 17 6 3.1948 -8.0329 -1.8640 18 1 4.2576 -8.1053 -1.6860 19 6 2.6499 -8.5458 -3.0348 20 7 1.3569 -8.4573 -3.2516 21 14 3.7558 -9.3601 -4.3011 22 1 5.1611 -9.3319 -3.8222 23 1 3.3287 -10.7687 -4.4985 24 1 3.6564 -8.6276 -5.5891 25 6 2.8681 -4.6609 4.5172 26 6 3.6908 -5.7895 5.1489 27 8 2.8104 -6.7963 5.6521 28 6 1.9934 -7.4094 4.6529 29 6 1.1023 -6.3479 4.0023 30 1 -0.3634 0.0775 1.0248 31 1 -0.3634 0.8487 -0.5795 32 1 -0.3634 -0.9262 -0.4453 33 1 3.1728 -0.8754 -1.2674 34 1 1.6131 -1.8594 -1.2684 35 1 2.9079 -3.2208 2.1949 36 1 0.4038 -4.5760 2.1089 37 1 0.5441 -3.6581 3.6274 38 1 3.5284 -5.1425 2.0517 39 1 1.5188 -5.4169 0.7597 40 1 1.2772 -6.9841 1.5684 41 1 1.4287 -7.3702 -1.0947 42 1 0.9765 -8.8158 -4.0688 43 1 3.5375 -3.9129 4.0926 44 1 2.2398 -4.1985 5.2786 45 1 4.2896 -5.3884 5.9666 46 1 4.3482 -6.2247 4.3962 47 1 1.3692 -8.1754 5.1132 48 1 2.6285 -7.8658 3.8936 49 1 0.4385 -5.9196 4.7533 50 1 0.5101 -6.8054 3.2098 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484178859.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:06 Heat of formation + Delta-G solvation = -91.436402 kcal Electronic energy + Delta-G solvation = -31148.399769 eV Core-core repulsion = 26983.358098 eV Total energy + Delta-G solvation = -4165.041671 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.69712 -39.71701 -38.12678 -37.11749 -36.17956 -34.08572 -33.70116 -31.70297 -31.16901 -31.08650 -28.90888 -27.54238 -26.60508 -24.39487 -24.30681 -23.37635 -22.26358 -21.15122 -20.14344 -19.38048 -19.07284 -17.92421 -17.37830 -16.58194 -16.39937 -15.95623 -15.61542 -15.47782 -15.38552 -15.05267 -14.75675 -14.53696 -14.42112 -13.98349 -13.81169 -13.64334 -13.21706 -13.06574 -12.91075 -12.65381 -12.47187 -12.36793 -12.24071 -12.22680 -11.99397 -11.60946 -11.58680 -11.47543 -11.26593 -11.07560 -10.58383 -10.41431 -10.37146 -10.29968 -10.24720 -10.24222 -9.65931 -9.55534 -9.51557 -9.19915 -8.55952 -8.13801 -7.99440 -6.44516 -3.85606 2.41704 2.95013 3.13888 3.24839 3.31571 3.65316 3.85786 3.93133 4.00337 4.22326 4.42441 4.44811 4.52009 4.63198 4.68447 4.74450 4.92549 5.00940 5.09946 5.21352 5.22080 5.30828 5.36308 5.41695 5.49697 5.50288 5.60841 5.62256 5.65704 5.69468 5.74040 5.79234 5.86314 5.89876 5.91088 5.97005 5.98431 6.04184 6.19247 6.21670 6.25557 6.43334 7.04068 7.28615 7.32715 7.44856 7.52383 8.02828 8.13223 8.57465 9.14832 9.50901 10.01765 10.73113 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007098 B = 0.004186 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3943.769918 B = 6687.183589 C = 9737.450955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 H 0.109 0.891 4 C -0.148 4.148 5 C -0.196 4.196 6 H 0.121 0.879 7 C 0.545 3.455 8 O -0.534 6.534 9 N -0.725 5.725 10 C 0.091 3.909 11 C 0.103 3.897 12 N -0.648 5.648 13 C 0.045 3.955 14 C 0.442 3.558 15 O -0.583 6.583 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.900 5.900 21 Si 0.928 3.072 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.282 1.282 25 C -0.140 4.140 26 C 0.067 3.933 27 O -0.387 6.387 28 C 0.069 3.931 29 C -0.138 4.138 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.398 0.602 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.345 0.655 39 H 0.047 0.953 40 H 0.087 0.913 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.897 13.258 12.492 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 H 0.128 0.872 4 C -0.185 4.185 5 C -0.217 4.217 6 H 0.139 0.861 7 C 0.332 3.668 8 O -0.410 6.410 9 N -0.378 5.378 10 C -0.035 4.035 11 C 0.011 3.989 12 N -0.280 5.280 13 C -0.087 4.087 14 C 0.227 3.773 15 O -0.467 6.467 16 N -0.199 5.199 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.178 4.178 26 C -0.010 4.010 27 O -0.306 6.306 28 C -0.008 4.008 29 C -0.177 4.177 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.233 0.767 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.166 0.834 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.105 0.895 48 H 0.089 0.911 49 H 0.092 0.908 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.048 12.501 12.903 17.996 hybrid contribution 0.113 0.515 -1.512 1.602 sum -0.935 13.015 11.391 17.321 Atomic orbital electron populations 1.21363 0.91506 1.01575 1.02404 1.22375 0.96564 0.93429 1.01424 0.87249 1.23130 1.03227 1.01663 0.90519 1.22272 1.01982 1.01247 0.96244 0.86101 1.19664 0.88134 0.81113 0.77926 1.90705 1.14528 1.74805 1.61010 1.45924 1.10354 1.27757 1.53715 1.22107 0.94230 0.89775 0.97358 1.21278 0.92864 0.92372 0.92430 1.60271 1.14574 1.42956 1.10222 1.21766 0.96075 0.99373 0.91492 1.19742 0.88896 0.84976 0.83685 1.90522 1.15639 1.62364 1.78187 1.41868 1.10488 1.51107 1.16457 1.19732 0.93189 1.32977 0.96961 0.87889 1.25261 0.96213 0.97944 0.98466 1.69623 1.10717 1.46437 1.27385 0.85817 0.80087 0.78628 0.79913 1.19220 1.20716 1.20763 1.22260 0.99288 0.98736 0.97550 1.22495 0.91700 0.88022 0.98767 1.87855 1.54352 1.53778 1.34586 1.22468 0.92976 0.93900 0.91472 1.22174 0.98021 0.96831 1.00668 0.91537 0.93317 0.91639 0.87684 0.87949 0.76706 0.90604 0.91347 0.83441 0.93472 0.89446 0.77545 0.91894 0.91162 0.90593 0.89692 0.91359 0.89522 0.91144 0.90805 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 8.43 37.16 0.31 -0.94 16 2 C -0.12 -1.18 6.41 -90.58 -0.58 -1.76 16 3 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.15 -1.54 9.88 -26.69 -0.26 -1.81 16 5 C -0.20 -2.01 6.19 -91.77 -0.57 -2.58 16 6 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 7 C 0.54 6.90 7.59 -10.98 -0.08 6.81 16 8 O -0.53 -8.37 13.10 5.56 0.07 -8.29 16 9 N -0.72 -7.92 5.06 -60.30 -0.30 -8.23 16 10 C 0.09 1.03 3.87 -4.05 -0.02 1.01 16 11 C 0.10 1.12 0.30 -131.42 -0.04 1.08 16 12 N -0.65 -8.97 4.34 -101.03 -0.44 -9.41 16 13 C 0.05 0.75 5.30 -4.98 -0.03 0.72 16 14 C 0.44 9.96 7.83 -10.99 -0.09 9.87 16 15 O -0.58 -15.04 15.87 5.55 0.09 -14.96 16 16 N -0.56 -13.95 5.29 -10.97 -0.06 -14.01 16 17 C -0.30 -8.20 9.68 -14.94 -0.14 -8.34 16 18 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 21 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 C -0.14 -1.34 4.86 -26.49 -0.13 -1.47 16 26 C 0.07 0.73 6.68 37.30 0.25 0.98 16 27 O -0.39 -4.97 10.77 -35.23 -0.38 -5.34 16 28 C 0.07 0.83 6.68 37.21 0.25 1.08 16 29 C -0.14 -1.52 4.78 -26.59 -0.13 -1.64 16 30 H 0.07 0.82 7.26 -51.93 -0.38 0.44 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.87 7.02 -51.93 -0.36 0.50 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 1.25 8.05 -51.93 -0.42 0.84 16 35 H 0.40 3.75 6.45 -40.82 -0.26 3.49 16 36 H 0.08 1.00 6.76 -51.93 -0.35 0.65 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.35 4.85 7.24 -39.29 -0.28 4.57 16 39 H 0.05 0.76 6.54 -51.92 -0.34 0.42 16 40 H 0.09 1.36 6.22 -51.93 -0.32 1.03 16 41 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.07 0.58 7.20 -51.93 -0.37 0.21 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.07 0.86 7.75 -51.93 -0.40 0.45 16 47 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.07 1.01 7.75 -51.93 -0.40 0.61 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.08 0.88 6.33 -51.93 -0.33 0.55 16 LS Contribution 393.54 15.07 5.93 5.93 Total: -1.00 -31.89 393.54 -8.60 -40.49 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -7.87 Total: 18.10 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -1.35 Total: 3.53 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.08 Total: -55.27 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.22 Total: -28.60 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.89 -8.60 -40.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484178859.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.945 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds