Wall clock time and date at job start Sat Apr 11 2020 05:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 115.55090 * 2 1 4 4 C 1.53077 * 117.53361 * 214.28915 * 2 1 3 5 5 C 1.53004 * 117.50034 * 145.67283 * 2 1 3 6 6 H 1.08999 * 117.50034 * 215.02503 * 5 2 1 7 7 C 1.50703 * 117.49766 * 0.02767 * 5 2 1 8 8 O 1.21277 * 119.99822 * 359.90792 * 7 5 2 9 9 N 1.34776 * 119.99747 * 179.91460 * 7 5 2 10 10 C 1.46494 * 119.99933 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.47542 * 174.56249 * 10 9 7 12 12 N 1.46905 * 109.54065 * 305.47845 * 11 10 9 13 13 C 1.46904 * 110.99987 * 305.28879 * 12 11 10 14 14 C 1.50691 * 109.47263 * 184.15545 * 13 12 11 15 15 O 1.21293 * 120.00216 * 0.02562 * 14 13 12 16 16 N 1.34781 * 120.00036 * 180.02562 * 14 13 12 17 17 C 1.37096 * 119.99950 * 179.72571 * 16 14 13 18 18 H 1.08004 * 120.00017 * 0.27348 * 17 16 14 19 19 C 1.38945 * 119.99954 * 180.27318 * 17 16 14 20 20 N 1.31413 * 119.99975 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00096 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46897 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47036 * 120.00183 * 21 19 17 24 24 H 1.48497 * 109.47330 * 240.00180 * 21 19 17 25 25 C 1.53179 * 109.54320 * 65.64832 * 11 10 9 26 26 C 1.53283 * 109.06255 * 176.85405 * 25 11 10 27 27 O 1.42900 * 109.45924 * 302.44742 * 26 25 11 28 28 C 1.42900 * 114.09838 * 61.16450 * 27 26 25 29 29 C 1.53099 * 109.41253 * 298.83405 * 28 27 26 30 30 H 1.09004 * 109.47345 * 274.32490 * 1 2 3 31 31 H 1.09001 * 109.47597 * 34.32534 * 1 2 3 32 32 H 1.09005 * 109.47258 * 154.32568 * 1 2 3 33 33 H 1.08997 * 117.49344 * 145.04093 * 4 2 1 34 34 H 1.08999 * 117.51303 * 0.02562 * 4 2 1 35 35 H 0.97003 * 120.00003 * 359.97438 * 9 7 5 36 36 H 1.09004 * 109.47188 * 54.56082 * 10 9 7 37 37 H 1.08997 * 109.47304 * 294.56513 * 10 9 7 38 38 H 1.00896 * 111.00459 * 69.23995 * 12 11 10 39 39 H 1.09008 * 109.47133 * 64.15552 * 13 12 11 40 40 H 1.09002 * 109.47196 * 304.16210 * 13 12 11 41 41 H 0.96999 * 120.00357 * 359.97438 * 16 14 13 42 42 H 0.97004 * 119.99690 * 180.02562 * 20 19 17 43 43 H 1.08990 * 109.52240 * 296.84897 * 25 11 10 44 44 H 1.09004 * 109.51877 * 57.03586 * 25 11 10 45 45 H 1.09003 * 109.45492 * 182.45021 * 26 25 11 46 46 H 1.08997 * 109.45647 * 62.44515 * 26 25 11 47 47 H 1.09003 * 109.48566 * 178.85656 * 28 27 26 48 48 H 1.08999 * 109.48595 * 58.81658 * 28 27 26 49 49 H 1.08995 * 109.52169 * 297.70567 * 29 28 27 50 50 H 1.09001 * 109.52215 * 177.51674 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2376 -1.1215 -0.7647 5 6 2.2365 -1.1208 0.7653 6 1 3.1711 -0.8746 1.2692 7 6 1.3720 -2.1406 1.4609 8 8 0.1639 -2.0526 1.4023 9 7 1.9416 -3.1503 2.1483 10 6 1.1014 -4.1414 2.8249 11 6 1.9849 -5.2448 3.4103 12 7 2.8327 -5.8090 2.3515 13 6 2.0214 -6.2694 1.2167 14 6 2.9125 -6.9323 0.1982 15 8 4.1061 -7.0136 0.3982 16 7 2.3833 -7.4348 -0.9349 17 6 3.1948 -8.0329 -1.8640 18 1 4.2576 -8.1053 -1.6860 19 6 2.6499 -8.5458 -3.0348 20 7 1.3569 -8.4573 -3.2516 21 14 3.7558 -9.3601 -4.3011 22 1 5.1611 -9.3319 -3.8222 23 1 3.3287 -10.7687 -4.4985 24 1 3.6564 -8.6276 -5.5891 25 6 2.8681 -4.6609 4.5172 26 6 3.6908 -5.7895 5.1489 27 8 2.8104 -6.7963 5.6521 28 6 1.9934 -7.4094 4.6529 29 6 1.1023 -6.3479 4.0023 30 1 -0.3634 0.0775 1.0248 31 1 -0.3634 0.8487 -0.5795 32 1 -0.3634 -0.9262 -0.4453 33 1 3.1728 -0.8754 -1.2674 34 1 1.6131 -1.8594 -1.2684 35 1 2.9079 -3.2208 2.1949 36 1 0.4038 -4.5760 2.1089 37 1 0.5441 -3.6581 3.6274 38 1 3.5284 -5.1425 2.0517 39 1 1.5188 -5.4169 0.7597 40 1 1.2772 -6.9841 1.5684 41 1 1.4287 -7.3702 -1.0947 42 1 0.9765 -8.8158 -4.0688 43 1 3.5375 -3.9129 4.0926 44 1 2.2398 -4.1985 5.2786 45 1 4.2896 -5.3884 5.9666 46 1 4.3482 -6.2247 4.3962 47 1 1.3692 -8.1754 5.1132 48 1 2.6285 -7.8658 3.8936 49 1 0.4385 -5.9196 4.7533 50 1 0.5101 -6.8054 3.2098 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484178859.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:05 Heat of formation + Delta-G solvation = -115.084014 kcal Electronic energy + Delta-G solvation = -31149.425207 eV Core-core repulsion = 26983.358098 eV Total energy + Delta-G solvation = -4166.067108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.69565 -40.71567 -39.86757 -38.07350 -37.20492 -35.97534 -34.85054 -33.32123 -32.67503 -32.02842 -29.79729 -28.54035 -28.13514 -26.05720 -25.22644 -24.39533 -23.19728 -21.99932 -21.15769 -21.01270 -20.15325 -19.88371 -18.27572 -18.02207 -17.31351 -17.01727 -16.86014 -16.64408 -16.53235 -16.34800 -15.98322 -15.78866 -15.68679 -15.39066 -15.28571 -14.69254 -14.39625 -14.22848 -13.97789 -13.65545 -13.59710 -13.55625 -13.36700 -13.34010 -13.16736 -13.02316 -12.93308 -12.70781 -12.42208 -12.40843 -12.16067 -12.12191 -11.51762 -11.48926 -11.23577 -11.20440 -11.08710 -10.63426 -10.50554 -10.35650 -10.16028 -10.02169 -9.38696 -8.47500 -5.96300 1.35501 1.41003 1.45955 1.54987 2.02670 2.05348 2.27533 2.80503 2.83005 3.07650 3.19633 3.40483 3.55341 3.59353 3.68065 3.79867 3.87352 3.87964 4.12616 4.14285 4.20950 4.34569 4.43536 4.44389 4.44972 4.51516 4.56080 4.62980 4.72736 4.76981 4.78749 4.86493 4.87795 4.91285 4.94739 5.00790 5.08273 5.13455 5.15319 5.26386 5.32514 5.40206 5.52538 5.81405 6.04132 6.30262 6.36163 6.42962 6.57945 7.11727 7.18647 7.54897 8.09331 8.70131 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007098 B = 0.004186 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3943.769918 B = 6687.183589 C = 9737.450955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.115 4.115 3 H 0.139 0.861 4 C -0.154 4.154 5 C -0.197 4.197 6 H 0.151 0.849 7 C 0.536 3.464 8 O -0.570 6.570 9 N -0.716 5.716 10 C 0.097 3.903 11 C 0.110 3.890 12 N -0.651 5.651 13 C 0.066 3.934 14 C 0.442 3.558 15 O -0.616 6.616 16 N -0.575 5.575 17 C -0.330 4.330 18 H 0.081 0.919 19 C -0.013 4.013 20 N -0.922 5.922 21 Si 0.992 3.008 22 H -0.271 1.271 23 H -0.272 1.272 24 H -0.272 1.272 25 C -0.133 4.133 26 C 0.064 3.936 27 O -0.399 6.399 28 C 0.070 3.930 29 C -0.138 4.138 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.407 0.593 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.345 0.655 39 H 0.053 0.947 40 H 0.100 0.900 41 H 0.393 0.607 42 H 0.277 0.723 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.106 0.894 46 H 0.047 0.953 47 H 0.100 0.900 48 H 0.043 0.957 49 H 0.091 0.909 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.329 14.579 13.284 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.133 4.133 3 H 0.157 0.843 4 C -0.192 4.192 5 C -0.217 4.217 6 H 0.169 0.831 7 C 0.324 3.676 8 O -0.449 6.449 9 N -0.369 5.369 10 C -0.028 4.028 11 C 0.019 3.981 12 N -0.284 5.284 13 C -0.066 4.066 14 C 0.229 3.771 15 O -0.502 6.502 16 N -0.212 5.212 17 C -0.459 4.459 18 H 0.099 0.901 19 C -0.213 4.213 20 N -0.563 5.563 21 Si 0.816 3.184 22 H -0.196 1.196 23 H -0.198 1.198 24 H -0.197 1.197 25 C -0.171 4.171 26 C -0.013 4.013 27 O -0.318 6.318 28 C -0.007 4.007 29 C -0.176 4.176 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.143 0.857 34 H 0.094 0.906 35 H 0.244 0.756 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.166 0.834 39 H 0.071 0.929 40 H 0.118 0.882 41 H 0.226 0.774 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.124 0.876 46 H 0.066 0.934 47 H 0.118 0.882 48 H 0.061 0.939 49 H 0.110 0.890 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.475 13.823 13.717 19.480 hybrid contribution -0.069 0.101 -1.686 1.690 sum -0.544 13.924 12.032 18.410 Atomic orbital electron populations 1.21286 0.92929 1.00805 1.01551 1.22497 0.95538 0.94578 1.00719 0.84304 1.23127 1.03815 1.01517 0.90692 1.22403 1.02747 1.00661 0.95934 0.83090 1.20172 0.88012 0.81626 0.77759 1.90696 1.16174 1.75751 1.62306 1.45871 1.10799 1.27124 1.53086 1.22005 0.94012 0.89798 0.97024 1.21302 0.92751 0.92264 0.91791 1.60246 1.14812 1.43725 1.09607 1.21501 0.95020 0.99303 0.90780 1.20734 0.89150 0.83510 0.83662 1.90493 1.17531 1.63296 1.78857 1.41951 1.10331 1.51848 1.17055 1.19691 0.92682 1.34970 0.98575 0.90120 1.26033 0.97583 0.97943 0.99732 1.69691 1.11830 1.46758 1.28066 0.84886 0.78018 0.77989 0.77555 1.19573 1.19753 1.19706 1.22239 0.99279 0.98490 0.97062 1.22602 0.91577 0.87951 0.99133 1.87843 1.54653 1.54366 1.34931 1.22438 0.92761 0.94521 0.90941 1.22188 0.97946 0.96526 1.00956 0.92819 0.91584 0.94458 0.85658 0.90639 0.75616 0.92546 0.90548 0.83447 0.92875 0.88155 0.77369 0.91400 0.89453 0.89141 0.87610 0.93423 0.88192 0.93907 0.89008 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.42 8.43 71.98 0.61 -1.81 16 2 C -0.11 -2.07 6.41 -10.77 -0.07 -2.14 16 3 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 4 C -0.15 -3.05 9.88 30.62 0.30 -2.74 16 5 C -0.20 -3.67 6.19 -11.54 -0.07 -3.75 16 6 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16 7 C 0.54 13.13 7.59 87.66 0.67 13.79 16 8 O -0.57 -17.98 13.10 -3.02 -0.04 -18.02 16 9 N -0.72 -14.63 5.06 -463.07 -2.34 -16.97 16 10 C 0.10 2.07 3.87 86.38 0.33 2.41 16 11 C 0.11 2.24 0.30 3.64 0.00 2.25 16 12 N -0.65 -17.62 4.34 -473.54 -2.06 -19.67 16 13 C 0.07 2.18 5.30 85.55 0.45 2.63 16 14 C 0.44 20.33 7.83 87.65 0.69 21.01 16 15 O -0.62 -32.48 15.87 -3.07 -0.05 -32.53 16 16 N -0.57 -29.24 5.29 -306.99 -1.62 -30.86 16 17 C -0.33 -18.53 9.68 84.04 0.81 -17.72 16 18 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 19 C -0.01 -0.71 5.50 84.92 0.47 -0.25 16 20 N -0.92 -50.07 13.05 21.66 0.28 -49.79 16 21 Si 0.99 42.78 29.55 68.60 2.03 44.80 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 25 C -0.13 -2.20 4.86 30.75 0.15 -2.05 16 26 C 0.06 1.29 6.68 72.08 0.48 1.77 16 27 O -0.40 -9.65 10.77 -148.98 -1.60 -11.26 16 28 C 0.07 1.63 6.68 72.02 0.48 2.12 16 29 C -0.14 -2.81 4.78 30.69 0.15 -2.66 16 30 H 0.05 1.32 7.26 -2.38 -0.02 1.30 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 1.02 7.02 -2.38 -0.02 1.01 16 33 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 1.90 8.05 -2.39 -0.02 1.88 16 35 H 0.41 6.85 6.45 -92.71 -0.60 6.25 16 36 H 0.06 1.45 6.76 -2.38 -0.02 1.44 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.35 9.39 7.24 -89.70 -0.65 8.74 16 39 H 0.05 1.72 6.54 -2.38 -0.02 1.70 16 40 H 0.10 3.08 6.22 -2.39 -0.01 3.07 16 41 H 0.39 19.43 7.90 -92.71 -0.73 18.70 16 42 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 43 H 0.09 1.17 7.20 -2.39 -0.02 1.15 16 44 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 45 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.05 1.16 7.75 -2.39 -0.02 1.14 16 47 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.04 1.23 7.75 -2.39 -0.02 1.21 16 49 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.07 1.59 6.33 -2.39 -0.02 1.58 16 Total: -1.00 -70.64 393.54 -0.95 -71.59 By element: Atomic # 1 Polarization: 50.84 SS G_CDS: -0.99 Total: 49.85 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 5.45 Total: 12.86 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -5.74 Total: -117.30 kcal Atomic # 8 Polarization: -60.12 SS G_CDS: -1.69 Total: -61.81 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -70.64 -0.95 -71.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484178859.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.492 kcal (2) G-P(sol) polarization free energy of solvation -70.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds