Wall clock time and date at job start Sat Apr 11 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 115.56035 * 2 1 4 4 C 1.52997 * 117.50268 * 214.31619 * 2 1 3 5 5 C 1.52992 * 117.50134 * 145.68824 * 2 1 3 6 6 H 1.09006 * 117.51978 * 0.02562 * 5 2 1 7 7 C 1.50698 * 117.50191 * 214.98268 * 5 2 1 8 8 O 1.21277 * 120.00294 * 359.97438 * 7 5 2 9 9 N 1.34777 * 120.00141 * 179.97438 * 7 5 2 10 10 C 1.46504 * 120.00277 * 179.97438 * 9 7 5 11 11 C 1.53005 * 109.47341 * 175.33565 * 10 9 7 12 12 N 1.46896 * 109.54243 * 305.60912 * 11 10 9 13 13 C 1.46903 * 111.00194 * 301.27023 * 12 11 10 14 14 C 1.50698 * 109.47161 * 176.55437 * 13 12 11 15 15 O 1.21291 * 119.99992 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99652 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99863 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99743 * 0.02562 * 17 16 14 19 19 C 1.38953 * 120.00170 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99756 * 359.72530 * 19 17 16 21 21 Si 1.86801 * 119.99969 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46805 * 89.99887 * 21 19 17 23 23 H 1.48503 * 109.46889 * 209.99848 * 21 19 17 24 24 H 1.48495 * 109.47343 * 329.99812 * 21 19 17 25 25 C 1.53175 * 109.61066 * 65.82851 * 11 10 9 26 26 C 1.53100 * 109.15865 * 176.89125 * 25 11 10 27 27 O 1.42908 * 109.41296 * 302.39207 * 26 25 11 28 28 C 1.42899 * 114.09685 * 61.16149 * 27 26 25 29 29 C 1.53095 * 109.41224 * 298.83799 * 28 27 26 30 30 H 1.09003 * 109.47722 * 274.30719 * 1 2 3 31 31 H 1.09003 * 109.47698 * 34.31023 * 1 2 3 32 32 H 1.09002 * 109.47300 * 154.30596 * 1 2 3 33 33 H 1.08993 * 117.50025 * 145.02186 * 4 2 1 34 34 H 1.09005 * 117.49542 * 359.97438 * 4 2 1 35 35 H 0.97000 * 120.00258 * 359.97438 * 9 7 5 36 36 H 1.09004 * 109.46536 * 55.33707 * 10 9 7 37 37 H 1.08998 * 109.46910 * 295.34096 * 10 9 7 38 38 H 1.00899 * 110.99879 * 177.31535 * 12 11 10 39 39 H 1.09005 * 109.46901 * 56.55409 * 13 12 11 40 40 H 1.08997 * 109.47128 * 296.55936 * 13 12 11 41 41 H 0.97000 * 120.00794 * 0.02562 * 16 14 13 42 42 H 0.97003 * 119.99696 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.52753 * 296.79276 * 25 11 10 44 44 H 1.08999 * 109.52462 * 56.99044 * 25 11 10 45 45 H 1.09000 * 109.47864 * 182.40958 * 26 25 11 46 46 H 1.08993 * 109.48965 * 62.38382 * 26 25 11 47 47 H 1.09003 * 109.48000 * 178.85994 * 28 27 26 48 48 H 1.08994 * 109.49228 * 58.82698 * 28 27 26 49 49 H 1.09002 * 109.52293 * 297.70438 * 29 28 27 50 50 H 1.09008 * 109.52174 * 177.51641 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2364 -1.1209 0.7650 6 1 1.6115 -1.8589 1.2681 7 6 3.5292 -0.7810 1.4608 8 8 3.9719 0.3464 1.4009 9 7 4.1934 -1.7300 2.1498 10 6 5.4505 -1.3998 2.8259 11 6 5.9344 -2.6124 3.6237 12 7 4.8695 -3.0604 4.5309 13 6 4.4766 -1.9863 5.4528 14 6 3.3278 -2.4540 6.3087 15 8 2.8806 -3.5722 6.1651 16 7 2.7980 -1.6299 7.2342 17 6 1.7532 -2.0556 8.0132 18 1 1.3549 -3.0513 7.8854 19 6 1.2065 -1.2059 8.9672 20 7 1.6946 0.0038 9.1264 21 14 -0.2175 -1.7856 10.0280 22 1 0.3111 -2.4242 11.2601 23 1 -1.0649 -0.6233 10.3973 24 1 -1.0308 -2.7701 9.2701 25 6 6.3001 -3.7476 2.6626 26 6 6.8556 -4.9266 3.4658 27 8 7.9872 -4.4939 4.2237 28 6 7.6953 -3.4662 5.1727 29 6 7.1735 -2.2285 4.4381 30 1 -0.3635 0.0772 1.0248 31 1 -0.3634 0.8488 -0.5793 32 1 -0.3634 -0.9261 -0.4456 33 1 3.1715 -0.8750 -1.2682 34 1 1.6112 -1.8586 -1.2681 35 1 3.8392 -2.6318 2.1981 36 1 5.2895 -0.5604 3.5024 37 1 6.2019 -1.1296 2.0839 38 1 5.1498 -3.8870 5.0372 39 1 4.1705 -1.1104 4.8808 40 1 5.3222 -1.7269 6.0898 41 1 3.1558 -0.7357 7.3494 42 1 1.3133 0.5969 9.7926 43 1 5.4107 -4.0647 2.1181 44 1 7.0550 -3.3991 1.9577 45 1 7.1574 -5.7212 2.7834 46 1 6.0867 -5.3006 4.1417 47 1 8.6021 -3.2086 5.7200 48 1 6.9375 -3.8207 5.8712 49 1 7.9461 -1.8493 3.7691 50 1 6.9088 -1.4590 5.1634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484178862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:17 Heat of formation + Delta-G solvation = -96.513735 kcal Electronic energy + Delta-G solvation = -30873.506826 eV Core-core repulsion = 26708.244985 eV Total energy + Delta-G solvation = -4165.261841 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.68187 -39.67296 -38.13195 -37.09422 -36.21743 -34.09856 -33.69606 -31.73327 -31.23335 -31.03772 -29.08337 -27.63180 -26.59001 -24.36097 -24.24487 -23.51007 -22.36849 -20.90686 -20.00065 -19.41777 -18.95764 -17.95645 -17.48654 -16.87030 -16.26096 -16.03862 -15.75033 -15.65663 -15.08073 -14.86779 -14.76796 -14.52765 -14.26202 -14.12863 -13.92716 -13.70251 -13.44675 -13.27722 -12.89154 -12.71640 -12.52397 -12.27696 -12.22842 -12.12644 -12.00122 -11.57761 -11.53464 -11.47105 -11.42483 -11.08531 -10.83283 -10.48268 -10.47406 -10.41935 -10.24493 -10.17960 -9.78886 -9.60339 -9.53776 -8.96413 -8.56977 -8.17462 -7.99549 -6.44340 -3.85505 2.55413 3.15366 3.16291 3.24520 3.30020 3.72192 3.72768 3.85931 3.98560 4.23038 4.42903 4.48401 4.60079 4.65908 4.66624 4.72260 4.82298 5.04675 5.05797 5.14450 5.19999 5.20311 5.22375 5.39031 5.40777 5.45051 5.52425 5.54832 5.57804 5.58455 5.64803 5.65916 5.72148 5.82658 5.85288 5.90475 5.94529 5.96025 6.03525 6.20163 6.21211 6.49789 7.02760 7.05252 7.44606 7.52226 7.63624 8.02576 8.32577 8.57381 9.14625 9.50788 10.01566 10.73221 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006759 B = 0.004110 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4141.816100 B = 6811.309562 C =10034.799656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 H 0.116 0.884 4 C -0.151 4.151 5 C -0.189 4.189 6 H 0.125 0.875 7 C 0.543 3.457 8 O -0.550 6.550 9 N -0.708 5.708 10 C 0.135 3.865 11 C 0.101 3.899 12 N -0.653 5.653 13 C 0.044 3.956 14 C 0.441 3.559 15 O -0.584 6.584 16 N -0.562 5.562 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.900 5.900 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.269 1.269 25 C -0.139 4.139 26 C 0.055 3.945 27 O -0.383 6.383 28 C 0.060 3.940 29 C -0.186 4.186 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.410 0.590 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.350 0.650 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.095 0.905 46 H 0.059 0.941 47 H 0.096 0.904 48 H 0.052 0.948 49 H 0.079 0.921 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.916 -3.319 -16.282 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 H 0.134 0.866 4 C -0.188 4.188 5 C -0.210 4.210 6 H 0.143 0.857 7 C 0.329 3.671 8 O -0.429 6.429 9 N -0.359 5.359 10 C 0.011 3.989 11 C 0.009 3.991 12 N -0.287 5.287 13 C -0.088 4.088 14 C 0.227 3.773 15 O -0.468 6.468 16 N -0.198 5.198 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.541 5.541 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.177 4.177 26 C -0.021 4.021 27 O -0.301 6.301 28 C -0.017 4.017 29 C -0.226 4.226 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.247 0.753 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.172 0.828 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.078 0.922 47 H 0.114 0.886 48 H 0.071 0.929 49 H 0.098 0.902 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.543 -3.080 -16.728 18.607 hybrid contribution -0.152 0.134 1.538 1.551 sum 7.391 -2.946 -15.191 17.148 Atomic orbital electron populations 1.21410 0.92242 1.02022 1.02520 1.22347 0.95260 0.95005 1.01346 0.86617 1.23079 1.02983 1.01713 0.91033 1.22308 0.97890 1.05407 0.95419 0.85677 1.19634 0.84519 0.84565 0.78380 1.90674 1.68768 1.21144 1.62288 1.45710 1.24062 1.14104 1.52019 1.21341 0.85802 0.96335 0.95428 1.21231 0.89683 0.94661 0.93518 1.60257 1.38421 1.07106 1.22953 1.21778 0.97186 0.95263 0.94584 1.19728 0.86808 0.86908 0.83894 1.90516 1.64413 1.20702 1.71197 1.41859 1.31036 1.15133 1.31788 1.19684 1.09059 1.00914 1.13318 0.87941 1.25266 0.99253 0.95195 0.98139 1.69615 1.42335 1.06902 1.35265 0.85865 0.80542 0.78118 0.79814 1.20408 1.20893 1.19407 1.22206 1.01812 0.95639 0.98026 1.22645 0.88863 0.96008 0.94614 1.87926 1.33895 1.55352 1.52966 1.22552 1.01285 0.87068 0.90756 1.22864 0.98925 0.99552 1.01240 0.91650 0.91809 0.92382 0.88511 0.87916 0.75344 0.91065 0.91417 0.82808 0.89354 0.93585 0.77517 0.91827 0.89877 0.90490 0.88714 0.92247 0.88571 0.92938 0.90218 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.19 37.15 0.38 -0.77 16 2 C -0.12 -1.32 5.92 -90.63 -0.54 -1.85 16 3 H 0.12 1.43 7.67 -51.93 -0.40 1.03 16 4 C -0.15 -1.40 9.88 -26.73 -0.26 -1.67 16 5 C -0.19 -2.19 5.91 -91.78 -0.54 -2.73 16 6 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 7 C 0.54 7.68 7.61 -10.99 -0.08 7.59 16 8 O -0.55 -9.64 16.26 5.56 0.09 -9.55 16 9 N -0.71 -8.81 5.17 -60.29 -0.31 -9.12 16 10 C 0.14 1.64 4.00 -4.04 -0.02 1.62 16 11 C 0.10 1.11 0.34 -131.42 -0.05 1.07 16 12 N -0.65 -9.16 5.07 -101.04 -0.51 -9.68 16 13 C 0.04 0.74 5.38 -4.98 -0.03 0.71 16 14 C 0.44 10.04 7.83 -10.99 -0.09 9.95 16 15 O -0.58 -15.13 15.85 5.55 0.09 -15.04 16 16 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 17 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 18 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 19 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 20 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 21 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 C -0.14 -1.31 4.96 -26.59 -0.13 -1.45 16 26 C 0.06 0.55 6.58 37.21 0.24 0.80 16 27 O -0.38 -4.43 10.77 -35.23 -0.38 -4.81 16 28 C 0.06 0.65 6.58 37.21 0.24 0.89 16 29 C -0.19 -1.92 4.68 -26.59 -0.12 -2.04 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 0.76 8.05 -51.93 -0.42 0.34 16 35 H 0.41 4.79 7.33 -40.82 -0.30 4.49 16 36 H 0.07 0.99 6.63 -51.93 -0.34 0.64 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.35 5.19 5.26 -39.29 -0.21 4.98 16 39 H 0.09 1.48 6.23 -51.93 -0.32 1.16 16 40 H 0.05 0.70 6.46 -51.93 -0.34 0.36 16 41 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.08 0.75 7.24 -51.93 -0.38 0.38 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.64 6.75 -51.93 -0.35 0.29 16 47 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.05 0.62 6.88 -51.93 -0.36 0.26 16 49 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.08 0.87 6.37 -51.92 -0.33 0.54 16 LS Contribution 396.77 15.07 5.98 5.98 Total: -1.00 -32.26 396.77 -8.42 -40.68 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: -7.79 Total: 19.22 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.23 Total: 4.23 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.16 Total: -56.60 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.20 Total: -29.40 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.26 -8.42 -40.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484178862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.834 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds