Wall clock time and date at job start Sat Apr 11 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 115.56035 * 2 1 4 4 C 1.52997 * 117.50268 * 214.31619 * 2 1 3 5 5 C 1.52992 * 117.50134 * 145.68824 * 2 1 3 6 6 H 1.09006 * 117.51978 * 0.02562 * 5 2 1 7 7 C 1.50698 * 117.50191 * 214.98268 * 5 2 1 8 8 O 1.21277 * 120.00294 * 359.97438 * 7 5 2 9 9 N 1.34777 * 120.00141 * 179.97438 * 7 5 2 10 10 C 1.46504 * 120.00277 * 179.97438 * 9 7 5 11 11 C 1.53005 * 109.47341 * 175.33565 * 10 9 7 12 12 N 1.46896 * 109.54243 * 305.60912 * 11 10 9 13 13 C 1.46903 * 111.00194 * 301.27023 * 12 11 10 14 14 C 1.50698 * 109.47161 * 176.55437 * 13 12 11 15 15 O 1.21291 * 119.99992 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99652 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99863 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99743 * 0.02562 * 17 16 14 19 19 C 1.38953 * 120.00170 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99756 * 359.72530 * 19 17 16 21 21 Si 1.86801 * 119.99969 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46805 * 89.99887 * 21 19 17 23 23 H 1.48503 * 109.46889 * 209.99848 * 21 19 17 24 24 H 1.48495 * 109.47343 * 329.99812 * 21 19 17 25 25 C 1.53175 * 109.61066 * 65.82851 * 11 10 9 26 26 C 1.53100 * 109.15865 * 176.89125 * 25 11 10 27 27 O 1.42908 * 109.41296 * 302.39207 * 26 25 11 28 28 C 1.42899 * 114.09685 * 61.16149 * 27 26 25 29 29 C 1.53095 * 109.41224 * 298.83799 * 28 27 26 30 30 H 1.09003 * 109.47722 * 274.30719 * 1 2 3 31 31 H 1.09003 * 109.47698 * 34.31023 * 1 2 3 32 32 H 1.09002 * 109.47300 * 154.30596 * 1 2 3 33 33 H 1.08993 * 117.50025 * 145.02186 * 4 2 1 34 34 H 1.09005 * 117.49542 * 359.97438 * 4 2 1 35 35 H 0.97000 * 120.00258 * 359.97438 * 9 7 5 36 36 H 1.09004 * 109.46536 * 55.33707 * 10 9 7 37 37 H 1.08998 * 109.46910 * 295.34096 * 10 9 7 38 38 H 1.00899 * 110.99879 * 177.31535 * 12 11 10 39 39 H 1.09005 * 109.46901 * 56.55409 * 13 12 11 40 40 H 1.08997 * 109.47128 * 296.55936 * 13 12 11 41 41 H 0.97000 * 120.00794 * 0.02562 * 16 14 13 42 42 H 0.97003 * 119.99696 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.52753 * 296.79276 * 25 11 10 44 44 H 1.08999 * 109.52462 * 56.99044 * 25 11 10 45 45 H 1.09000 * 109.47864 * 182.40958 * 26 25 11 46 46 H 1.08993 * 109.48965 * 62.38382 * 26 25 11 47 47 H 1.09003 * 109.48000 * 178.85994 * 28 27 26 48 48 H 1.08994 * 109.49228 * 58.82698 * 28 27 26 49 49 H 1.09002 * 109.52293 * 297.70438 * 29 28 27 50 50 H 1.09008 * 109.52174 * 177.51641 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2364 -1.1209 0.7650 6 1 1.6115 -1.8589 1.2681 7 6 3.5292 -0.7810 1.4608 8 8 3.9719 0.3464 1.4009 9 7 4.1934 -1.7300 2.1498 10 6 5.4505 -1.3998 2.8259 11 6 5.9344 -2.6124 3.6237 12 7 4.8695 -3.0604 4.5309 13 6 4.4766 -1.9863 5.4528 14 6 3.3278 -2.4540 6.3087 15 8 2.8806 -3.5722 6.1651 16 7 2.7980 -1.6299 7.2342 17 6 1.7532 -2.0556 8.0132 18 1 1.3549 -3.0513 7.8854 19 6 1.2065 -1.2059 8.9672 20 7 1.6946 0.0038 9.1264 21 14 -0.2175 -1.7856 10.0280 22 1 0.3111 -2.4242 11.2601 23 1 -1.0649 -0.6233 10.3973 24 1 -1.0308 -2.7701 9.2701 25 6 6.3001 -3.7476 2.6626 26 6 6.8556 -4.9266 3.4658 27 8 7.9872 -4.4939 4.2237 28 6 7.6953 -3.4662 5.1727 29 6 7.1735 -2.2285 4.4381 30 1 -0.3635 0.0772 1.0248 31 1 -0.3634 0.8488 -0.5793 32 1 -0.3634 -0.9261 -0.4456 33 1 3.1715 -0.8750 -1.2682 34 1 1.6112 -1.8586 -1.2681 35 1 3.8392 -2.6318 2.1981 36 1 5.2895 -0.5604 3.5024 37 1 6.2019 -1.1296 2.0839 38 1 5.1498 -3.8870 5.0372 39 1 4.1705 -1.1104 4.8808 40 1 5.3222 -1.7269 6.0898 41 1 3.1558 -0.7357 7.3494 42 1 1.3133 0.5969 9.7926 43 1 5.4107 -4.0647 2.1181 44 1 7.0550 -3.3991 1.9577 45 1 7.1574 -5.7212 2.7834 46 1 6.0867 -5.3006 4.1417 47 1 8.6021 -3.2086 5.7200 48 1 6.9375 -3.8207 5.8712 49 1 7.9461 -1.8493 3.7691 50 1 6.9088 -1.4590 5.1634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484178862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:16 Heat of formation + Delta-G solvation = -120.715610 kcal Electronic energy + Delta-G solvation = -30874.556298 eV Core-core repulsion = 26708.244985 eV Total energy + Delta-G solvation = -4166.311313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.69497 -40.70837 -39.89338 -38.02265 -37.27646 -35.98778 -34.93908 -33.32574 -32.65938 -32.01960 -29.90614 -28.54692 -28.18698 -26.01487 -25.15178 -24.48672 -23.27159 -21.76316 -21.16360 -21.00565 -20.05540 -19.85130 -18.47434 -18.19565 -17.30104 -17.16398 -16.95364 -16.69111 -16.50919 -16.15817 -16.02638 -15.79038 -15.65787 -15.31833 -14.98804 -14.92184 -14.73030 -14.13774 -14.06354 -13.78769 -13.66696 -13.55840 -13.42602 -13.19626 -13.10406 -12.91662 -12.90287 -12.58658 -12.42823 -12.32565 -12.29283 -12.13758 -11.77121 -11.51202 -11.34695 -11.31897 -11.05916 -10.82653 -10.51822 -10.34105 -10.03809 -10.02874 -9.44247 -8.47845 -5.96794 1.36630 1.40592 1.50023 1.53305 2.02903 2.16446 2.27607 2.79164 2.86514 2.93267 3.19236 3.39821 3.52476 3.63435 3.73922 3.78873 3.81218 3.89666 4.00022 4.19595 4.21313 4.24939 4.30007 4.40773 4.41268 4.46677 4.49690 4.57919 4.64550 4.70308 4.75997 4.76918 4.85911 4.87368 4.92043 5.03779 5.06128 5.07062 5.18142 5.19414 5.39252 5.39760 5.46053 5.81181 6.03498 6.20878 6.26150 6.57233 6.58879 7.10870 7.25720 7.54109 8.08336 8.69573 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006759 B = 0.004110 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4141.816100 B = 6811.309562 C =10034.799656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.132 4.132 3 H 0.094 0.906 4 C -0.124 4.124 5 C -0.204 4.204 6 H 0.132 0.868 7 C 0.536 3.464 8 O -0.591 6.591 9 N -0.700 5.700 10 C 0.136 3.864 11 C 0.108 3.892 12 N -0.656 5.656 13 C 0.063 3.937 14 C 0.441 3.559 15 O -0.616 6.616 16 N -0.574 5.574 17 C -0.331 4.331 18 H 0.081 0.919 19 C -0.013 4.013 20 N -0.922 5.922 21 Si 0.992 3.008 22 H -0.270 1.270 23 H -0.273 1.273 24 H -0.271 1.271 25 C -0.132 4.132 26 C 0.054 3.946 27 O -0.393 6.393 28 C 0.060 3.940 29 C -0.182 4.182 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.415 0.585 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.348 0.652 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.393 0.607 42 H 0.277 0.723 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.115 0.885 46 H 0.048 0.952 47 H 0.110 0.890 48 H 0.038 0.962 49 H 0.094 0.906 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.199 -4.069 -17.386 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 H 0.112 0.888 4 C -0.161 4.161 5 C -0.225 4.225 6 H 0.150 0.850 7 C 0.324 3.676 8 O -0.473 6.473 9 N -0.350 5.350 10 C 0.011 3.989 11 C 0.017 3.983 12 N -0.290 5.290 13 C -0.069 4.069 14 C 0.229 3.771 15 O -0.502 6.502 16 N -0.211 5.211 17 C -0.461 4.461 18 H 0.099 0.901 19 C -0.213 4.213 20 N -0.563 5.563 21 Si 0.816 3.184 22 H -0.196 1.196 23 H -0.198 1.198 24 H -0.196 1.196 25 C -0.170 4.170 26 C -0.023 4.023 27 O -0.312 6.312 28 C -0.017 4.017 29 C -0.222 4.222 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.148 0.852 35 H 0.252 0.748 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.169 0.831 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.227 0.773 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.133 0.867 46 H 0.066 0.934 47 H 0.128 0.872 48 H 0.057 0.943 49 H 0.112 0.888 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.849 -3.845 -17.840 19.866 hybrid contribution -0.181 0.341 1.831 1.871 sum 7.668 -3.504 -16.009 18.093 Atomic orbital electron populations 1.21401 0.90901 1.03434 1.02063 1.22379 0.96294 0.94277 1.02120 0.88754 1.23179 1.02905 1.00833 0.89198 1.22338 0.96918 1.06259 0.97012 0.85024 1.20120 0.85195 0.84113 0.78208 1.90650 1.70012 1.22710 1.63887 1.45708 1.24005 1.14044 1.51263 1.21366 0.85951 0.96111 0.95437 1.21256 0.89039 0.94946 0.93086 1.60218 1.40174 1.06209 1.22383 1.21523 0.95300 0.95735 0.94347 1.20722 0.87216 0.86040 0.83166 1.90487 1.65657 1.22133 1.71936 1.41946 1.31148 1.15518 1.32500 1.19664 1.10758 1.00594 1.15083 0.90085 1.26046 1.01333 0.95156 0.98755 1.69684 1.43293 1.07567 1.35741 0.84935 0.77504 0.77866 0.78102 1.19568 1.19765 1.19596 1.22182 1.02460 0.94702 0.97629 1.22749 0.88321 0.96616 0.94596 1.87919 1.34584 1.55555 1.53158 1.22589 1.01571 0.86939 0.90572 1.22831 0.98742 0.99339 1.01248 0.92975 0.90764 0.90672 0.88555 0.85173 0.74769 0.92917 0.90336 0.83079 0.89182 0.91634 0.77336 0.91373 0.89222 0.89100 0.86746 0.93419 0.87204 0.94331 0.88772 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 10.19 71.98 0.73 -1.35 16 2 C -0.13 -2.80 5.92 -10.80 -0.06 -2.86 16 3 H 0.09 2.41 7.67 -2.39 -0.02 2.39 16 4 C -0.12 -2.07 9.88 30.59 0.30 -1.77 16 5 C -0.20 -4.58 5.91 -11.54 -0.07 -4.65 16 6 H 0.13 2.75 8.14 -2.38 -0.02 2.73 16 7 C 0.54 15.11 7.61 87.66 0.67 15.78 16 8 O -0.59 -21.08 16.26 -3.02 -0.05 -21.13 16 9 N -0.70 -16.93 5.17 -463.05 -2.39 -19.32 16 10 C 0.14 3.15 4.00 86.38 0.35 3.49 16 11 C 0.11 2.23 0.34 3.65 0.00 2.23 16 12 N -0.66 -17.96 5.07 -473.57 -2.40 -20.36 16 13 C 0.06 2.10 5.38 85.56 0.46 2.56 16 14 C 0.44 20.40 7.83 87.66 0.69 21.08 16 15 O -0.62 -32.53 15.85 -3.06 -0.05 -32.58 16 16 N -0.57 -29.33 5.29 -306.99 -1.62 -30.96 16 17 C -0.33 -18.68 9.68 84.04 0.81 -17.87 16 18 H 0.08 4.84 7.16 -2.91 -0.02 4.81 16 19 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 20 N -0.92 -50.18 13.05 21.66 0.28 -49.90 16 21 Si 0.99 42.85 29.55 68.60 2.03 44.87 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 25 C -0.13 -2.20 4.96 30.69 0.15 -2.05 16 26 C 0.05 0.96 6.58 72.02 0.47 1.44 16 27 O -0.39 -8.36 10.77 -148.98 -1.60 -9.97 16 28 C 0.06 1.20 6.58 72.01 0.47 1.67 16 29 C -0.18 -3.44 4.68 30.68 0.14 -3.30 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.03 7.90 -2.39 -0.02 1.01 16 33 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.13 1.48 8.05 -2.38 -0.02 1.46 16 35 H 0.42 9.25 7.33 -92.71 -0.68 8.57 16 36 H 0.05 1.44 6.63 -2.39 -0.02 1.43 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.35 10.13 5.26 -89.69 -0.47 9.66 16 39 H 0.09 3.02 6.23 -2.38 -0.01 3.01 16 40 H 0.07 1.95 6.46 -2.39 -0.02 1.93 16 41 H 0.39 19.51 7.90 -92.71 -0.73 18.77 16 42 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 43 H 0.09 1.41 7.24 -2.39 -0.02 1.39 16 44 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.05 0.98 6.75 -2.39 -0.02 0.96 16 47 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.04 0.88 6.88 -2.39 -0.02 0.86 16 49 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.08 1.56 6.37 -2.38 -0.02 1.55 16 Total: -1.00 -70.58 396.77 -1.12 -71.70 By element: Atomic # 1 Polarization: 54.38 SS G_CDS: -0.90 Total: 53.48 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 5.59 Total: 14.17 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -6.14 Total: -120.54 kcal Atomic # 8 Polarization: -61.97 SS G_CDS: -1.70 Total: -63.67 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -70.58 -1.12 -71.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484178862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.020 kcal (2) G-P(sol) polarization free energy of solvation -70.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds