Wall clock time and date at job start Sat Apr 11 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.67224 * 2 1 4 4 C 1.54885 * 110.75611 * 236.76530 * 2 1 3 5 5 C 1.54273 * 104.19650 * 203.73892 * 4 2 1 6 6 C 1.53870 * 106.59479 * 23.61040 * 5 4 2 7 7 H 1.09006 * 110.03147 * 240.66525 * 6 5 4 8 8 C 1.50704 * 110.03008 * 119.28460 * 6 5 4 9 9 O 1.21283 * 119.99665 * 241.45178 * 8 6 5 10 10 N 1.34771 * 120.00067 * 61.45406 * 8 6 5 11 11 C 1.46503 * 119.99941 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47073 * 179.97438 * 11 10 8 13 13 O 1.42903 * 112.93418 * 309.66825 * 12 11 10 14 14 C 1.53929 * 113.82989 * 81.32356 * 12 11 10 15 15 N 1.47965 * 86.17840 * 138.08996 * 14 12 11 16 16 C 1.46898 * 111.00104 * 222.41550 * 15 14 12 17 17 C 1.50700 * 109.47423 * 269.36136 * 16 15 14 18 18 O 1.21291 * 119.99998 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00094 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99986 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00089 * 0.02562 * 20 19 17 22 22 C 1.38958 * 119.99929 * 180.02562 * 20 19 17 23 23 N 1.31415 * 120.00004 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99956 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47095 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47285 * 119.99902 * 24 22 20 27 27 H 1.48501 * 109.46832 * 239.99627 * 24 22 20 28 28 C 1.47957 * 90.76318 * 335.31583 * 15 14 12 29 29 C 1.54269 * 106.60204 * 359.97438 * 6 5 4 30 30 H 1.09004 * 109.46867 * 181.78216 * 1 2 3 31 31 H 1.08994 * 109.46937 * 301.78176 * 1 2 3 32 32 H 1.08994 * 109.46942 * 61.78210 * 1 2 3 33 33 H 1.09008 * 110.48706 * 85.06337 * 4 2 1 34 34 H 1.08995 * 110.48964 * 322.41658 * 4 2 1 35 35 H 1.09000 * 110.03049 * 264.32764 * 5 4 2 36 36 H 1.09004 * 110.02918 * 142.89389 * 5 4 2 37 37 H 0.97002 * 119.99839 * 359.97438 * 10 8 6 38 38 H 1.09003 * 109.46742 * 59.99908 * 11 10 8 39 39 H 1.08993 * 109.47490 * 299.99646 * 11 10 8 40 40 H 0.96700 * 114.00311 * 48.43636 * 13 12 11 41 41 H 1.09001 * 113.76367 * 252.40670 * 14 12 11 42 42 H 1.08997 * 113.75795 * 23.78184 * 14 12 11 43 43 H 1.08996 * 109.47154 * 29.36392 * 16 15 14 44 44 H 1.09006 * 109.46996 * 149.36191 * 16 15 14 45 45 H 0.97008 * 119.99874 * 0.02562 * 19 17 16 46 46 H 0.96993 * 120.00088 * 180.02562 * 23 22 20 47 47 H 1.09005 * 113.75470 * 270.36692 * 28 15 14 48 48 H 1.09000 * 113.85902 * 139.02041 * 28 15 14 49 49 H 1.09002 * 110.48494 * 95.06645 * 29 6 5 50 50 H 1.08998 * 110.48982 * 217.70978 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0199 0.0000 4 6 2.0789 -0.7938 -1.2114 5 6 3.4932 -1.2254 -0.7715 6 6 3.4932 -1.2280 0.7672 7 1 4.2333 -0.5208 1.1418 8 6 3.7958 -2.6121 1.2810 9 8 2.9795 -3.1990 1.9592 10 7 4.9736 -3.1975 0.9868 11 6 5.2680 -4.5428 1.4867 12 6 6.6584 -4.9701 1.0124 13 8 6.8471 -4.7906 -0.3927 14 6 7.8076 -4.4081 1.8686 15 7 8.4177 -5.7512 1.7540 16 6 8.9784 -6.1862 3.0403 17 6 10.4192 -5.7542 3.1322 18 8 10.9288 -5.1435 2.2165 19 7 11.1415 -6.0463 4.2318 20 6 12.4521 -5.6528 4.3156 21 1 12.9056 -5.1083 3.5006 22 6 13.1970 -5.9545 5.4492 23 7 12.6450 -6.6167 6.4411 24 14 14.9825 -5.4177 5.5637 25 1 15.3618 -4.6927 4.3245 26 1 15.1558 -4.5214 6.7349 27 1 15.8494 -6.6129 5.7225 28 6 7.0879 -6.3573 1.5229 29 6 2.0792 -0.7974 1.2087 30 1 -0.3633 -1.0272 0.0320 31 1 -0.3633 0.5412 0.8735 32 1 -0.3633 0.4859 -0.9055 33 1 2.1320 -0.1554 -2.0935 34 1 1.4575 -1.6673 -1.4084 35 1 4.2326 -0.5162 -1.1437 36 1 3.7120 -2.2252 -1.1467 37 1 5.6263 -2.7282 0.4440 38 1 4.5237 -5.2426 1.1065 39 1 5.2405 -4.5396 2.5763 40 1 6.5785 -3.9204 -0.7176 41 1 8.3795 -3.6224 1.3750 42 1 7.5109 -4.1459 2.8841 43 1 8.4113 -5.7357 3.8548 44 1 8.9193 -7.2722 3.1137 45 1 10.7340 -6.5351 4.9640 46 1 13.1648 -6.8269 7.2325 47 1 6.5808 -6.6652 2.4374 48 1 7.0830 -7.1294 0.7535 49 1 1.4573 -1.6714 1.4025 50 1 2.1324 -0.1622 2.0929 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484299190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:20 Heat of formation + Delta-G solvation = -95.837129 kcal Electronic energy + Delta-G solvation = -29356.770138 eV Core-core repulsion = 25191.537638 eV Total energy + Delta-G solvation = -4165.232501 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.92548 -40.14366 -38.07866 -37.74765 -35.93126 -34.54839 -33.86158 -32.08058 -31.25981 -30.27162 -29.31350 -27.64966 -26.27255 -25.64053 -24.76730 -22.82050 -21.96686 -20.44661 -20.25899 -20.00093 -19.18118 -17.99267 -17.77634 -16.85525 -16.54083 -16.32328 -15.86974 -15.47163 -15.41133 -15.23460 -14.63202 -14.52247 -14.24586 -14.06366 -13.91703 -13.69392 -13.46887 -13.41044 -13.11921 -13.05371 -12.51472 -12.37771 -12.12611 -11.97156 -11.87651 -11.73110 -11.49800 -11.38066 -11.23600 -11.16786 -11.04469 -10.95769 -10.93433 -10.79036 -10.33810 -10.21960 -10.06291 -10.00709 -9.49959 -9.46568 -8.73780 -8.17365 -7.94697 -6.40564 -3.81198 2.32048 2.72542 3.16827 3.27156 3.34511 3.61177 3.90047 3.93470 4.01752 4.05207 4.16837 4.21723 4.28512 4.47473 4.64699 4.79170 4.86183 4.92929 5.01516 5.09098 5.12178 5.15767 5.16989 5.21983 5.24540 5.32954 5.34445 5.42393 5.48907 5.53785 5.57627 5.60155 5.63095 5.69781 5.77174 5.77225 5.80553 5.81968 5.95909 6.00932 6.08994 6.26579 6.53651 7.04358 7.11001 7.36617 7.56474 7.87074 8.07623 8.63637 9.19946 9.56135 10.08663 10.77433 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.001805 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.695311 B =15508.714327 C =15834.997865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.076 0.924 4 C -0.120 4.120 5 C -0.118 4.118 6 C -0.115 4.115 7 H 0.101 0.899 8 C 0.521 3.479 9 O -0.536 6.536 10 N -0.730 5.730 11 C 0.100 3.900 12 C 0.091 3.909 13 O -0.519 6.519 14 C -0.011 4.011 15 N -0.436 5.436 16 C 0.007 3.993 17 C 0.447 3.553 18 O -0.574 6.574 19 N -0.567 5.567 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.017 3.983 29 C -0.107 4.107 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.398 0.602 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.370 0.630 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.391 0.609 46 H 0.270 0.730 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.087 0.913 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.708 10.599 -11.557 28.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.095 0.905 4 C -0.157 4.157 5 C -0.156 4.156 6 C -0.137 4.137 7 H 0.119 0.881 8 C 0.308 3.692 9 O -0.412 6.412 10 N -0.384 5.384 11 C -0.024 4.024 12 C 0.049 3.951 13 O -0.324 6.324 14 C -0.141 4.141 15 N -0.158 5.158 16 C -0.125 4.125 17 C 0.232 3.768 18 O -0.457 6.457 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.112 4.112 29 C -0.144 4.144 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.233 0.767 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.217 0.783 41 H 0.115 0.885 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.108 0.892 45 H 0.224 0.776 46 H 0.080 0.920 47 H 0.101 0.899 48 H 0.119 0.881 49 H 0.105 0.895 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.070 9.765 -11.910 27.739 hybrid contribution 0.371 0.723 1.170 1.424 sum -22.699 10.487 -10.740 27.214 Atomic orbital electron populations 1.21752 0.94749 1.02043 1.01623 1.22121 0.95744 0.99087 0.94748 0.90525 1.22427 0.95490 0.99979 0.97823 1.22166 0.98500 1.02316 0.92604 1.21998 1.00508 0.93900 0.97258 0.88115 1.20639 0.80946 0.88041 0.79569 1.90701 1.46860 1.65328 1.38320 1.45933 1.18879 1.18115 1.55429 1.22041 0.96462 0.83690 1.00218 1.22985 0.91304 0.98153 0.82668 1.86673 1.87654 1.37957 1.20075 1.24706 0.94550 0.95428 0.99368 1.68440 1.16331 1.02450 1.28550 1.22531 0.96863 1.01679 0.91453 1.19653 0.87270 0.85578 0.84341 1.90527 1.72004 1.44402 1.38783 1.41880 1.11528 1.50717 1.16359 1.19749 0.86349 1.33344 1.03260 0.87913 1.25256 1.00424 0.97085 0.95262 1.69619 1.37611 1.40124 1.07104 0.85803 0.81932 0.78290 0.78340 1.19242 1.20805 1.20750 1.24123 0.90704 0.95681 1.00706 1.22399 0.93787 1.00701 0.97553 0.92478 0.92585 0.92658 0.91326 0.91352 0.90614 0.91208 0.76674 0.90264 0.90088 0.78297 0.88528 0.90667 0.92386 0.89198 0.77567 0.91972 0.89882 0.88068 0.89487 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.27 37.16 0.34 -0.44 16 2 C -0.10 -0.56 3.49 -88.64 -0.31 -0.87 16 3 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 4 C -0.12 -0.65 6.28 -25.07 -0.16 -0.81 16 5 C -0.12 -0.61 6.36 -25.61 -0.16 -0.78 16 6 C -0.12 -0.77 3.30 -90.65 -0.30 -1.07 16 7 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 8 C 0.52 4.97 6.93 -10.99 -0.08 4.89 16 9 O -0.54 -7.24 15.42 5.56 0.09 -7.16 16 10 N -0.73 -5.74 5.17 -60.29 -0.31 -6.06 16 11 C 0.10 0.94 5.32 -4.04 -0.02 0.92 16 12 C 0.09 1.00 1.56 -89.69 -0.14 0.86 16 13 O -0.52 -5.87 13.51 -35.23 -0.48 -6.35 16 14 C -0.01 -0.16 7.35 -2.77 -0.02 -0.18 16 15 N -0.44 -7.27 5.65 -239.66 -1.35 -8.63 16 16 C 0.01 0.12 5.28 -4.98 -0.03 0.09 16 17 C 0.45 10.76 7.83 -10.99 -0.09 10.68 16 18 O -0.57 -16.06 16.01 5.55 0.09 -15.97 16 19 N -0.57 -14.56 5.29 -10.96 -0.06 -14.62 16 20 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 22 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 23 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 24 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 C 0.02 0.21 7.35 -2.77 -0.02 0.19 16 29 C -0.11 -0.78 5.59 -25.09 -0.14 -0.92 16 30 H 0.06 0.34 8.12 -51.93 -0.42 -0.08 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 34 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.38 7.59 -51.93 -0.39 -0.01 16 37 H 0.40 2.19 7.09 -40.82 -0.29 1.90 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.81 7.98 -51.93 -0.41 0.40 16 40 H 0.37 2.60 7.39 45.56 0.34 2.94 16 41 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.08 0.97 7.33 -51.93 -0.38 0.59 16 43 H 0.06 0.91 7.38 -51.93 -0.38 0.52 16 44 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 45 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 46 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.08 0.84 7.88 -51.93 -0.41 0.43 16 48 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 49 H 0.09 0.82 6.78 -51.93 -0.35 0.47 16 50 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 404.52 15.07 6.10 6.10 Total: -1.00 -35.82 404.52 -9.19 -45.02 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -7.61 Total: 10.99 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -1.36 Total: 4.49 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -1.00 Total: -53.32 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.30 Total: -29.47 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.82 -9.19 -45.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484299190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.822 kcal (2) G-P(sol) polarization free energy of solvation -35.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds