Wall clock time and date at job start Sat Apr 11 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.67224 * 2 1 4 4 C 1.54885 * 110.75611 * 236.76530 * 2 1 3 5 5 C 1.54273 * 104.19650 * 203.73892 * 4 2 1 6 6 C 1.53870 * 106.59479 * 23.61040 * 5 4 2 7 7 H 1.09006 * 110.03147 * 240.66525 * 6 5 4 8 8 C 1.50704 * 110.03008 * 119.28460 * 6 5 4 9 9 O 1.21283 * 119.99665 * 241.45178 * 8 6 5 10 10 N 1.34771 * 120.00067 * 61.45406 * 8 6 5 11 11 C 1.46503 * 119.99941 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47073 * 179.97438 * 11 10 8 13 13 O 1.42903 * 112.93418 * 309.66825 * 12 11 10 14 14 C 1.53929 * 113.82989 * 81.32356 * 12 11 10 15 15 N 1.47965 * 86.17840 * 138.08996 * 14 12 11 16 16 C 1.46898 * 111.00104 * 222.41550 * 15 14 12 17 17 C 1.50700 * 109.47423 * 269.36136 * 16 15 14 18 18 O 1.21291 * 119.99998 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00094 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99986 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00089 * 0.02562 * 20 19 17 22 22 C 1.38958 * 119.99929 * 180.02562 * 20 19 17 23 23 N 1.31415 * 120.00004 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99956 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47095 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47285 * 119.99902 * 24 22 20 27 27 H 1.48501 * 109.46832 * 239.99627 * 24 22 20 28 28 C 1.47957 * 90.76318 * 335.31583 * 15 14 12 29 29 C 1.54269 * 106.60204 * 359.97438 * 6 5 4 30 30 H 1.09004 * 109.46867 * 181.78216 * 1 2 3 31 31 H 1.08994 * 109.46937 * 301.78176 * 1 2 3 32 32 H 1.08994 * 109.46942 * 61.78210 * 1 2 3 33 33 H 1.09008 * 110.48706 * 85.06337 * 4 2 1 34 34 H 1.08995 * 110.48964 * 322.41658 * 4 2 1 35 35 H 1.09000 * 110.03049 * 264.32764 * 5 4 2 36 36 H 1.09004 * 110.02918 * 142.89389 * 5 4 2 37 37 H 0.97002 * 119.99839 * 359.97438 * 10 8 6 38 38 H 1.09003 * 109.46742 * 59.99908 * 11 10 8 39 39 H 1.08993 * 109.47490 * 299.99646 * 11 10 8 40 40 H 0.96700 * 114.00311 * 48.43636 * 13 12 11 41 41 H 1.09001 * 113.76367 * 252.40670 * 14 12 11 42 42 H 1.08997 * 113.75795 * 23.78184 * 14 12 11 43 43 H 1.08996 * 109.47154 * 29.36392 * 16 15 14 44 44 H 1.09006 * 109.46996 * 149.36191 * 16 15 14 45 45 H 0.97008 * 119.99874 * 0.02562 * 19 17 16 46 46 H 0.96993 * 120.00088 * 180.02562 * 23 22 20 47 47 H 1.09005 * 113.75470 * 270.36692 * 28 15 14 48 48 H 1.09000 * 113.85902 * 139.02041 * 28 15 14 49 49 H 1.09002 * 110.48494 * 95.06645 * 29 6 5 50 50 H 1.08998 * 110.48982 * 217.70978 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0199 0.0000 4 6 2.0789 -0.7938 -1.2114 5 6 3.4932 -1.2254 -0.7715 6 6 3.4932 -1.2280 0.7672 7 1 4.2333 -0.5208 1.1418 8 6 3.7958 -2.6121 1.2810 9 8 2.9795 -3.1990 1.9592 10 7 4.9736 -3.1975 0.9868 11 6 5.2680 -4.5428 1.4867 12 6 6.6584 -4.9701 1.0124 13 8 6.8471 -4.7906 -0.3927 14 6 7.8076 -4.4081 1.8686 15 7 8.4177 -5.7512 1.7540 16 6 8.9784 -6.1862 3.0403 17 6 10.4192 -5.7542 3.1322 18 8 10.9288 -5.1435 2.2165 19 7 11.1415 -6.0463 4.2318 20 6 12.4521 -5.6528 4.3156 21 1 12.9056 -5.1083 3.5006 22 6 13.1970 -5.9545 5.4492 23 7 12.6450 -6.6167 6.4411 24 14 14.9825 -5.4177 5.5637 25 1 15.3618 -4.6927 4.3245 26 1 15.1558 -4.5214 6.7349 27 1 15.8494 -6.6129 5.7225 28 6 7.0879 -6.3573 1.5229 29 6 2.0792 -0.7974 1.2087 30 1 -0.3633 -1.0272 0.0320 31 1 -0.3633 0.5412 0.8735 32 1 -0.3633 0.4859 -0.9055 33 1 2.1320 -0.1554 -2.0935 34 1 1.4575 -1.6673 -1.4084 35 1 4.2326 -0.5162 -1.1437 36 1 3.7120 -2.2252 -1.1467 37 1 5.6263 -2.7282 0.4440 38 1 4.5237 -5.2426 1.1065 39 1 5.2405 -4.5396 2.5763 40 1 6.5785 -3.9204 -0.7176 41 1 8.3795 -3.6224 1.3750 42 1 7.5109 -4.1459 2.8841 43 1 8.4113 -5.7357 3.8548 44 1 8.9193 -7.2722 3.1137 45 1 10.7340 -6.5351 4.9640 46 1 13.1648 -6.8269 7.2325 47 1 6.5808 -6.6652 2.4374 48 1 7.0830 -7.1294 0.7535 49 1 1.4573 -1.6714 1.4025 50 1 2.1324 -0.1622 2.0929 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484299190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:19 Heat of formation + Delta-G solvation = -125.868349 kcal Electronic energy + Delta-G solvation = -29358.072390 eV Core-core repulsion = 25191.537638 eV Total energy + Delta-G solvation = -4166.534752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.85408 -41.00475 -39.77388 -38.47063 -36.98230 -35.90429 -35.35810 -33.30104 -32.62088 -31.43931 -29.84129 -28.72753 -27.30179 -26.88160 -25.94577 -23.96428 -22.70288 -21.10801 -21.07782 -20.89307 -20.69640 -19.89168 -18.62951 -17.85386 -17.59039 -17.27575 -16.98355 -16.67724 -16.56164 -16.31448 -16.04666 -15.61762 -15.44921 -15.16439 -14.88693 -14.58392 -14.48211 -14.30490 -14.12114 -13.91365 -13.64268 -13.56946 -13.42536 -13.04738 -13.00638 -12.94226 -12.41899 -12.38138 -12.33588 -12.24236 -12.12945 -11.84879 -11.82248 -11.67233 -11.51470 -11.41418 -11.38267 -10.98152 -10.80164 -10.39937 -10.21920 -10.01663 -9.65057 -8.47574 -5.96312 1.35639 1.40677 1.54990 1.59146 2.02919 2.05007 2.27677 2.64014 2.91735 3.18378 3.22065 3.38413 3.48942 3.55851 3.61106 3.79357 4.00103 4.16254 4.19033 4.23223 4.34663 4.37110 4.42819 4.48410 4.53552 4.54983 4.59367 4.65582 4.66205 4.71238 4.74383 4.77011 4.88596 4.93489 5.04980 5.12966 5.16513 5.22897 5.34104 5.34219 5.37046 5.38275 5.40640 5.59510 5.84546 6.05410 6.40864 6.60111 6.67590 7.12576 7.17225 7.55919 8.12604 8.70086 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.001805 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.695311 B =15508.714327 C =15834.997865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.089 0.911 4 C -0.121 4.121 5 C -0.114 4.114 6 C -0.111 4.111 7 H 0.120 0.880 8 C 0.519 3.481 9 O -0.580 6.580 10 N -0.719 5.719 11 C 0.111 3.889 12 C 0.116 3.884 13 O -0.536 6.536 14 C -0.016 4.016 15 N -0.477 5.477 16 C 0.020 3.980 17 C 0.441 3.559 18 O -0.619 6.619 19 N -0.576 5.576 20 C -0.333 4.333 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.019 3.981 29 C -0.110 4.110 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.412 0.588 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.388 0.612 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.111 0.889 48 H 0.101 0.899 49 H 0.060 0.940 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.169 11.338 -11.855 29.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.107 0.893 4 C -0.158 4.158 5 C -0.152 4.152 6 C -0.132 4.132 7 H 0.138 0.862 8 C 0.307 3.693 9 O -0.460 6.460 10 N -0.373 5.373 11 C -0.014 4.014 12 C 0.073 3.927 13 O -0.343 6.343 14 C -0.145 4.145 15 N -0.199 5.199 16 C -0.111 4.111 17 C 0.229 3.771 18 O -0.505 6.505 19 N -0.214 5.214 20 C -0.463 4.463 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.110 4.110 29 C -0.148 4.148 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.249 0.751 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.238 0.762 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.127 0.873 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.128 0.872 48 H 0.119 0.881 49 H 0.079 0.921 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.541 10.509 -12.218 28.529 hybrid contribution 0.484 0.492 1.221 1.403 sum -23.057 11.002 -10.997 27.813 Atomic orbital electron populations 1.21756 0.94818 1.01498 1.02147 1.22122 0.95735 0.99442 0.94008 0.89281 1.22443 0.95417 0.99755 0.98195 1.22188 0.98938 1.02877 0.91185 1.22053 1.00484 0.92327 0.98383 0.86229 1.21151 0.80543 0.88818 0.78759 1.90686 1.48278 1.66591 1.40435 1.45836 1.18812 1.17610 1.55031 1.21849 0.95167 0.84374 1.00026 1.22638 0.90975 0.96820 0.82218 1.86638 1.87909 1.39611 1.20103 1.24758 0.95284 0.93975 1.00454 1.68373 1.19182 1.04429 1.27943 1.22403 0.92512 1.02850 0.93357 1.20800 0.89570 0.83887 0.82864 1.90488 1.73708 1.46126 1.40136 1.41952 1.11104 1.51130 1.17166 1.19688 0.88062 1.35059 1.03489 0.90518 1.26035 1.04219 0.96577 0.94443 1.69674 1.39073 1.40039 1.07371 0.84871 0.76987 0.78250 0.78218 1.19902 1.19483 1.19588 1.24245 0.88538 0.96228 1.01989 1.22379 0.94001 0.99906 0.98466 0.93550 0.92535 0.91683 0.89928 0.92512 0.88445 0.91418 0.75107 0.90285 0.90308 0.76213 0.90358 0.89637 0.89807 0.87308 0.77022 0.91311 0.87159 0.88100 0.92121 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.27 71.98 0.67 -0.81 16 2 C -0.09 -0.95 3.49 -9.51 -0.03 -0.98 16 3 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 4 C -0.12 -1.10 6.28 31.67 0.20 -0.90 16 5 C -0.11 -0.93 6.36 31.32 0.20 -0.73 16 6 C -0.11 -1.32 3.30 -10.81 -0.04 -1.35 16 7 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 8 C 0.52 9.35 6.93 87.66 0.61 9.96 16 9 O -0.58 -15.67 15.42 -3.04 -0.05 -15.71 16 10 N -0.72 -10.09 5.17 -463.05 -2.39 -12.49 16 11 C 0.11 1.88 5.32 86.38 0.46 2.34 16 12 C 0.12 2.34 1.56 -10.15 -0.02 2.33 16 13 O -0.54 -11.20 13.51 -148.98 -2.01 -13.22 16 14 C -0.02 -0.41 7.35 86.40 0.63 0.22 16 15 N -0.48 -15.43 5.65 -915.37 -5.17 -20.60 16 16 C 0.02 0.70 5.28 85.56 0.45 1.15 16 17 C 0.44 21.54 7.83 87.66 0.69 22.23 16 18 O -0.62 -35.58 16.01 -3.06 -0.05 -35.63 16 19 N -0.58 -30.01 5.29 -306.99 -1.62 -31.63 16 20 C -0.33 -19.25 9.68 84.04 0.81 -18.43 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -49.97 13.05 21.67 0.28 -49.68 16 24 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 28 C 0.02 0.42 7.35 86.40 0.64 1.05 16 29 C -0.11 -1.54 5.59 31.66 0.18 -1.37 16 30 H 0.05 0.56 8.12 -2.39 -0.02 0.54 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.06 0.65 8.05 -2.39 -0.02 0.63 16 35 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.07 0.60 7.59 -2.39 -0.02 0.58 16 37 H 0.41 3.61 7.09 -92.71 -0.66 2.95 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.08 1.44 7.98 -2.39 -0.02 1.42 16 40 H 0.39 4.67 7.39 -74.06 -0.55 4.12 16 41 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.09 2.07 7.33 -2.39 -0.02 2.05 16 43 H 0.08 2.44 7.38 -2.39 -0.02 2.43 16 44 H 0.11 3.31 8.08 -2.38 -0.02 3.29 16 45 H 0.40 19.47 7.90 -92.70 -0.73 18.74 16 46 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 47 H 0.11 1.89 7.88 -2.38 -0.02 1.87 16 48 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.06 1.19 6.78 -2.39 -0.02 1.18 16 50 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -79.28 404.52 -4.04 -83.32 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: -0.97 Total: 35.81 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 5.91 Total: 14.46 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -8.91 Total: -114.40 kcal Atomic # 8 Polarization: -62.45 SS G_CDS: -2.11 Total: -64.56 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -79.28 -4.04 -83.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484299190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.548 kcal (2) G-P(sol) polarization free energy of solvation -79.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds