Wall clock time and date at job start Sat Apr 11 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.05637 * 2 1 4 4 C 1.54271 * 110.02917 * 121.41559 * 2 1 3 5 5 C 1.54883 * 104.19614 * 142.89585 * 4 2 1 6 6 C 1.54889 * 102.74998 * 322.05142 * 5 4 2 7 7 H 1.08998 * 110.59855 * 279.21275 * 6 5 4 8 8 C 1.50698 * 110.48610 * 156.62265 * 6 5 4 9 9 O 1.21288 * 119.99925 * 245.22468 * 8 6 5 10 10 N 1.34775 * 120.00155 * 65.23315 * 8 6 5 11 11 C 1.46502 * 119.99980 * 179.97438 * 10 8 6 12 12 C 1.53004 * 109.46686 * 179.97438 * 11 10 8 13 13 O 1.42898 * 113.25364 * 52.05454 * 12 11 10 14 14 C 1.53513 * 114.16358 * 184.99779 * 12 11 10 15 15 N 1.47483 * 87.92809 * 139.67709 * 14 12 11 16 16 C 1.46902 * 110.99811 * 221.29433 * 15 14 12 17 17 C 1.50702 * 109.47027 * 169.99675 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34783 * 120.00004 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99804 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00499 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99671 * 179.72159 * 20 19 17 23 23 N 1.31411 * 119.99899 * 180.27617 * 22 20 19 24 24 Si 1.86800 * 120.00160 * 0.27431 * 22 20 19 25 25 H 1.48508 * 109.46685 * 89.99768 * 24 22 20 26 26 H 1.48494 * 109.47357 * 209.99847 * 24 22 20 27 27 H 1.48494 * 109.47227 * 330.00365 * 24 22 20 28 28 C 1.47476 * 87.83688 * 332.98604 * 15 14 12 29 29 C 1.53872 * 110.03428 * 238.57649 * 2 1 3 30 30 H 1.08991 * 109.47306 * 181.42141 * 1 2 3 31 31 H 1.08999 * 109.46771 * 301.42128 * 1 2 3 32 32 H 1.09001 * 109.46609 * 61.42064 * 1 2 3 33 33 H 1.09006 * 110.48497 * 261.56878 * 4 2 1 34 34 H 1.08998 * 110.48855 * 24.07589 * 4 2 1 35 35 H 1.09006 * 110.75744 * 203.73826 * 5 4 2 36 36 H 1.08997 * 110.76177 * 80.36878 * 5 4 2 37 37 H 0.97000 * 119.99625 * 359.97438 * 10 8 6 38 38 H 1.08999 * 109.46673 * 59.99706 * 11 10 8 39 39 H 1.08993 * 109.46753 * 299.99585 * 11 10 8 40 40 H 0.96696 * 113.99699 * 312.94032 * 13 12 11 41 41 H 1.08994 * 113.48012 * 24.91307 * 14 12 11 42 42 H 1.09004 * 113.47716 * 254.43617 * 14 12 11 43 43 H 1.09004 * 109.47131 * 49.99918 * 16 15 14 44 44 H 1.08994 * 109.47471 * 289.99668 * 16 15 14 45 45 H 0.97000 * 119.99715 * 359.97438 * 19 17 16 46 46 H 0.97005 * 120.00019 * 180.02562 * 23 22 20 47 47 H 1.09005 * 113.47915 * 141.77773 * 28 15 14 48 48 H 1.09003 * 113.48207 * 272.24610 * 28 15 14 49 49 H 1.08999 * 110.03382 * 121.43119 * 29 2 1 50 50 H 1.09004 * 110.03100 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 3.3136 -1.5008 0.7193 6 6 2.8874 -1.9408 -0.7033 7 1 2.2777 -2.8433 -0.6590 8 6 4.0989 -2.1664 -1.5707 9 8 4.2984 -1.4531 -2.5311 10 7 4.9607 -3.1608 -1.2793 11 6 6.1382 -3.3804 -2.1229 12 6 6.9440 -4.5606 -1.5764 13 8 6.1567 -5.7359 -1.3741 14 6 8.2690 -4.8103 -2.3102 15 7 8.8827 -5.0843 -0.9974 16 6 10.2188 -4.4807 -0.9047 17 6 10.7111 -4.5663 0.5171 18 8 10.0174 -5.0799 1.3692 19 7 11.9222 -4.0719 0.8419 20 6 12.3702 -4.1503 2.1352 21 1 11.7528 -4.6084 2.8937 22 6 13.6212 -3.6458 2.4688 23 7 14.0529 -3.7258 3.7074 24 14 14.6894 -2.8542 1.1566 25 1 14.3955 -1.4000 1.0903 26 1 16.1210 -3.0549 1.4961 27 1 14.4005 -3.4780 -0.1596 28 6 7.8623 -4.2035 -0.3992 29 6 2.0571 -0.7537 -1.2336 30 1 -0.3633 -1.0273 0.0255 31 1 -0.3633 0.5358 0.8770 32 1 -0.3632 0.4916 -0.9025 33 1 2.3297 -0.0536 2.0255 34 1 1.3132 -1.4642 1.5982 35 1 3.5325 -2.3679 1.3425 36 1 4.1709 -0.8292 0.6753 37 1 4.8012 -3.7311 -0.5110 38 1 6.7591 -2.4845 -2.1202 39 1 5.8193 -3.5985 -3.1420 40 1 5.3227 -5.5757 -0.9117 41 1 8.6686 -3.9221 -2.7995 42 1 8.2442 -5.6794 -2.9677 43 1 10.1672 -3.4353 -1.2090 44 1 10.9058 -5.0163 -1.5598 45 1 12.4771 -3.6615 0.1603 46 1 14.9261 -3.3733 3.9404 47 1 7.4926 -4.5582 0.5630 48 1 8.1532 -3.1533 -0.3784 49 1 2.6868 -0.0956 -1.8324 50 1 1.2229 -1.1191 -1.8325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484299192.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:27 Heat of formation + Delta-G solvation = -87.827790 kcal Electronic energy + Delta-G solvation = -29605.236758 eV Core-core repulsion = 25440.351568 eV Total energy + Delta-G solvation = -4164.885190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.01525 -40.21180 -38.26104 -37.87269 -36.00774 -34.54795 -33.95989 -32.00273 -31.71215 -30.46858 -29.31024 -27.74967 -26.07940 -25.65081 -24.75240 -22.80628 -22.00292 -20.65502 -20.14087 -19.81121 -19.37593 -18.40512 -18.03031 -16.86679 -16.50529 -15.97395 -15.91651 -15.56984 -15.43291 -15.15419 -15.05978 -14.68529 -14.29661 -13.98978 -13.79557 -13.70595 -13.47422 -13.26959 -13.18023 -13.05506 -12.58390 -12.50121 -12.34899 -12.15406 -12.06060 -11.81399 -11.57687 -11.43012 -11.21203 -11.19065 -11.13063 -11.08754 -10.79924 -10.75140 -10.61707 -10.05451 -10.01148 -9.98115 -9.58957 -9.46417 -8.85551 -8.41557 -8.20216 -6.33252 -3.84737 2.32399 2.73932 3.00827 3.04623 3.13309 3.60472 3.70319 3.92152 4.05065 4.08085 4.08468 4.17358 4.32876 4.47432 4.59225 4.67851 4.83122 4.90459 4.97786 5.06886 5.09094 5.14938 5.16895 5.18267 5.22913 5.33146 5.38993 5.41171 5.49172 5.51746 5.54198 5.59489 5.62247 5.65353 5.70596 5.76788 5.80631 5.88553 5.91662 6.00083 6.03446 6.07537 6.41084 6.99423 7.07734 7.36443 7.55408 7.87866 8.11294 8.57376 8.92610 9.39766 9.80119 10.79796 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.002169 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.824029 B =12908.436507 C =13927.518136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.119 4.119 5 C -0.115 4.115 6 C -0.114 4.114 7 H 0.101 0.899 8 C 0.522 3.478 9 O -0.538 6.538 10 N -0.729 5.729 11 C 0.104 3.896 12 C 0.087 3.913 13 O -0.518 6.518 14 C 0.012 3.988 15 N -0.429 5.429 16 C 0.003 3.997 17 C 0.453 3.547 18 O -0.559 6.559 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C -0.009 4.009 29 C -0.108 4.108 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.399 0.601 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.371 0.629 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.057 0.943 44 H 0.095 0.905 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.097 0.903 48 H 0.074 0.926 49 H 0.083 0.917 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.953 5.964 -11.962 27.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.157 4.157 5 C -0.153 4.153 6 C -0.135 4.135 7 H 0.119 0.881 8 C 0.309 3.691 9 O -0.414 6.414 10 N -0.382 5.382 11 C -0.020 4.020 12 C 0.045 3.955 13 O -0.322 6.322 14 C -0.118 4.118 15 N -0.151 5.151 16 C -0.129 4.129 17 C 0.238 3.762 18 O -0.441 6.441 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.139 4.139 29 C -0.146 4.146 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.234 0.766 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.219 0.781 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.075 0.925 44 H 0.113 0.887 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.116 0.884 48 H 0.092 0.908 49 H 0.102 0.898 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.451 5.195 -11.982 26.842 hybrid contribution 0.724 1.457 -0.522 1.709 sum -22.727 6.652 -12.505 26.779 Atomic orbital electron populations 1.21890 0.94914 1.01780 1.01641 1.21773 0.95742 0.99703 0.94524 0.90864 1.22446 0.96780 0.99101 0.97343 1.22507 0.98720 1.00749 0.93354 1.22183 0.94603 1.01123 0.95630 0.88076 1.20610 0.83965 0.79396 0.85133 1.90699 1.75343 1.46109 1.29240 1.45923 1.25569 1.34899 1.31846 1.21936 0.86944 0.97928 0.95198 1.22569 0.90465 0.84992 0.97484 1.86646 1.35053 1.30237 1.80251 1.24003 0.90670 1.02258 0.94839 1.68914 0.99696 1.41333 1.05177 1.22585 0.93737 0.98469 0.98136 1.19532 0.83209 0.84337 0.89109 1.90567 1.56365 1.46924 1.50227 1.42214 1.16060 1.54391 1.10392 1.19419 1.01860 1.37413 0.84626 0.86299 1.25045 0.96886 0.97834 0.96435 1.69621 1.20016 1.45446 1.16989 0.86670 0.81135 0.80179 0.81400 1.19655 1.20122 1.19490 1.24455 0.92742 0.96796 0.99874 1.22174 0.99051 0.95908 0.97448 0.92578 0.92713 0.92689 0.91248 0.91119 0.90574 0.90766 0.76582 0.90112 0.90242 0.78120 0.89933 0.88409 0.92514 0.88712 0.79721 0.91596 0.88420 0.90782 0.89824 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.85 37.16 0.33 -0.44 16 2 C -0.10 -0.63 3.50 -89.50 -0.31 -0.94 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.12 -0.69 6.36 -25.07 -0.16 -0.85 16 5 C -0.12 -0.74 6.31 -24.74 -0.16 -0.89 16 6 C -0.11 -0.79 3.25 -90.11 -0.29 -1.08 16 7 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 8 C 0.52 5.03 7.13 -10.99 -0.08 4.95 16 9 O -0.54 -7.30 15.42 5.55 0.09 -7.21 16 10 N -0.73 -5.82 5.31 -60.29 -0.32 -6.14 16 11 C 0.10 0.97 5.36 -4.04 -0.02 0.95 16 12 C 0.09 0.94 1.64 -90.09 -0.15 0.79 16 13 O -0.52 -5.77 13.56 -35.23 -0.48 -6.25 16 14 C 0.01 0.14 7.14 -7.54 -0.05 0.08 16 15 N -0.43 -6.87 6.06 -246.07 -1.49 -8.36 16 16 C 0.00 0.05 5.31 -4.97 -0.03 0.02 16 17 C 0.45 10.31 7.62 -10.98 -0.08 10.23 16 18 O -0.56 -15.04 15.34 5.55 0.09 -14.96 16 19 N -0.59 -14.08 5.09 -10.96 -0.06 -14.13 16 20 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 21 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.70 13.96 55.50 0.77 -24.92 16 24 Si 0.88 19.33 27.74 -169.99 -4.72 14.62 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.27 -5.40 6.51 56.52 0.37 -5.03 16 28 C -0.01 -0.13 6.14 -7.55 -0.05 -0.18 16 29 C -0.11 -0.81 5.84 -25.61 -0.15 -0.96 16 30 H 0.06 0.28 8.12 -51.93 -0.42 -0.14 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.36 7.83 -51.93 -0.41 -0.05 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.57 8.05 -51.93 -0.42 0.16 16 37 H 0.40 2.27 7.25 -40.82 -0.30 1.98 16 38 H 0.08 0.80 8.00 -51.93 -0.42 0.39 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.37 2.61 7.50 45.56 0.34 2.95 16 41 H 0.08 0.78 7.73 -51.93 -0.40 0.38 16 42 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.06 0.79 7.56 -51.93 -0.39 0.40 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 45 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 46 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.10 1.55 8.13 -51.93 -0.42 1.13 16 48 H 0.07 1.00 7.56 -51.93 -0.39 0.60 16 49 H 0.08 0.81 6.85 -51.93 -0.36 0.46 16 50 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 LS Contribution 400.30 15.07 6.03 6.03 Total: -1.00 -36.26 400.30 -9.11 -45.37 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -7.57 Total: 12.01 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -1.45 Total: 3.94 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -1.09 Total: -53.55 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.31 Total: -28.42 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.72 Total: 14.62 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.26 -9.11 -45.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484299192.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.463 kcal (2) G-P(sol) polarization free energy of solvation -36.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds