Wall clock time and date at job start Sat Apr 11 2020 05:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.05637 * 2 1 4 4 C 1.54271 * 110.02917 * 121.41559 * 2 1 3 5 5 C 1.54883 * 104.19614 * 142.89585 * 4 2 1 6 6 C 1.54889 * 102.74998 * 322.05142 * 5 4 2 7 7 H 1.08998 * 110.59855 * 279.21275 * 6 5 4 8 8 C 1.50698 * 110.48610 * 156.62265 * 6 5 4 9 9 O 1.21288 * 119.99925 * 245.22468 * 8 6 5 10 10 N 1.34775 * 120.00155 * 65.23315 * 8 6 5 11 11 C 1.46502 * 119.99980 * 179.97438 * 10 8 6 12 12 C 1.53004 * 109.46686 * 179.97438 * 11 10 8 13 13 O 1.42898 * 113.25364 * 52.05454 * 12 11 10 14 14 C 1.53513 * 114.16358 * 184.99779 * 12 11 10 15 15 N 1.47483 * 87.92809 * 139.67709 * 14 12 11 16 16 C 1.46902 * 110.99811 * 221.29433 * 15 14 12 17 17 C 1.50702 * 109.47027 * 169.99675 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34783 * 120.00004 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99804 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00499 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99671 * 179.72159 * 20 19 17 23 23 N 1.31411 * 119.99899 * 180.27617 * 22 20 19 24 24 Si 1.86800 * 120.00160 * 0.27431 * 22 20 19 25 25 H 1.48508 * 109.46685 * 89.99768 * 24 22 20 26 26 H 1.48494 * 109.47357 * 209.99847 * 24 22 20 27 27 H 1.48494 * 109.47227 * 330.00365 * 24 22 20 28 28 C 1.47476 * 87.83688 * 332.98604 * 15 14 12 29 29 C 1.53872 * 110.03428 * 238.57649 * 2 1 3 30 30 H 1.08991 * 109.47306 * 181.42141 * 1 2 3 31 31 H 1.08999 * 109.46771 * 301.42128 * 1 2 3 32 32 H 1.09001 * 109.46609 * 61.42064 * 1 2 3 33 33 H 1.09006 * 110.48497 * 261.56878 * 4 2 1 34 34 H 1.08998 * 110.48855 * 24.07589 * 4 2 1 35 35 H 1.09006 * 110.75744 * 203.73826 * 5 4 2 36 36 H 1.08997 * 110.76177 * 80.36878 * 5 4 2 37 37 H 0.97000 * 119.99625 * 359.97438 * 10 8 6 38 38 H 1.08999 * 109.46673 * 59.99706 * 11 10 8 39 39 H 1.08993 * 109.46753 * 299.99585 * 11 10 8 40 40 H 0.96696 * 113.99699 * 312.94032 * 13 12 11 41 41 H 1.08994 * 113.48012 * 24.91307 * 14 12 11 42 42 H 1.09004 * 113.47716 * 254.43617 * 14 12 11 43 43 H 1.09004 * 109.47131 * 49.99918 * 16 15 14 44 44 H 1.08994 * 109.47471 * 289.99668 * 16 15 14 45 45 H 0.97000 * 119.99715 * 359.97438 * 19 17 16 46 46 H 0.97005 * 120.00019 * 180.02562 * 23 22 20 47 47 H 1.09005 * 113.47915 * 141.77773 * 28 15 14 48 48 H 1.09003 * 113.48207 * 272.24610 * 28 15 14 49 49 H 1.08999 * 110.03382 * 121.43119 * 29 2 1 50 50 H 1.09004 * 110.03100 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 3.3136 -1.5008 0.7193 6 6 2.8874 -1.9408 -0.7033 7 1 2.2777 -2.8433 -0.6590 8 6 4.0989 -2.1664 -1.5707 9 8 4.2984 -1.4531 -2.5311 10 7 4.9607 -3.1608 -1.2793 11 6 6.1382 -3.3804 -2.1229 12 6 6.9440 -4.5606 -1.5764 13 8 6.1567 -5.7359 -1.3741 14 6 8.2690 -4.8103 -2.3102 15 7 8.8827 -5.0843 -0.9974 16 6 10.2188 -4.4807 -0.9047 17 6 10.7111 -4.5663 0.5171 18 8 10.0174 -5.0799 1.3692 19 7 11.9222 -4.0719 0.8419 20 6 12.3702 -4.1503 2.1352 21 1 11.7528 -4.6084 2.8937 22 6 13.6212 -3.6458 2.4688 23 7 14.0529 -3.7258 3.7074 24 14 14.6894 -2.8542 1.1566 25 1 14.3955 -1.4000 1.0903 26 1 16.1210 -3.0549 1.4961 27 1 14.4005 -3.4780 -0.1596 28 6 7.8623 -4.2035 -0.3992 29 6 2.0571 -0.7537 -1.2336 30 1 -0.3633 -1.0273 0.0255 31 1 -0.3633 0.5358 0.8770 32 1 -0.3632 0.4916 -0.9025 33 1 2.3297 -0.0536 2.0255 34 1 1.3132 -1.4642 1.5982 35 1 3.5325 -2.3679 1.3425 36 1 4.1709 -0.8292 0.6753 37 1 4.8012 -3.7311 -0.5110 38 1 6.7591 -2.4845 -2.1202 39 1 5.8193 -3.5985 -3.1420 40 1 5.3227 -5.5757 -0.9117 41 1 8.6686 -3.9221 -2.7995 42 1 8.2442 -5.6794 -2.9677 43 1 10.1672 -3.4353 -1.2090 44 1 10.9058 -5.0163 -1.5598 45 1 12.4771 -3.6615 0.1603 46 1 14.9261 -3.3733 3.9404 47 1 7.4926 -4.5582 0.5630 48 1 8.1532 -3.1533 -0.3784 49 1 2.6868 -0.0956 -1.8324 50 1 1.2229 -1.1191 -1.8325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484299192.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:26 Heat of formation + Delta-G solvation = -119.943167 kcal Electronic energy + Delta-G solvation = -29606.629385 eV Core-core repulsion = 25440.351568 eV Total energy + Delta-G solvation = -4166.277817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.98743 -41.04170 -39.92352 -38.58271 -37.02593 -35.96528 -35.35622 -33.78414 -32.58177 -31.58219 -29.89267 -28.80563 -27.09163 -26.84519 -25.89059 -23.95594 -22.74963 -21.32482 -21.27167 -21.01311 -20.44045 -20.17901 -18.81621 -17.88807 -17.66507 -17.11502 -16.94420 -16.74709 -16.53440 -16.42912 -15.77502 -15.73927 -15.50529 -15.14246 -14.83667 -14.69085 -14.44200 -14.37551 -14.22457 -14.13429 -13.98161 -13.61791 -13.44275 -13.04693 -12.97694 -12.92150 -12.67843 -12.49776 -12.43280 -12.10759 -11.99601 -11.80131 -11.71851 -11.61223 -11.56660 -11.52572 -11.30947 -10.94157 -10.83757 -10.45438 -10.26946 -10.22936 -9.79009 -8.43093 -6.04074 1.28844 1.33748 1.43104 1.57822 1.92472 2.03464 2.21270 2.62177 2.81673 3.12661 3.20745 3.23362 3.49784 3.55338 3.62126 3.78524 3.94677 4.08614 4.15786 4.24214 4.34351 4.35079 4.41337 4.41814 4.49560 4.52806 4.58092 4.62450 4.68794 4.69668 4.73948 4.76710 4.91198 4.95744 5.01309 5.13062 5.14733 5.24225 5.30557 5.32232 5.34358 5.43288 5.51193 5.56644 5.86865 5.97238 6.40433 6.57176 6.67686 6.85899 7.16484 7.36962 7.93864 8.74456 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.002169 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.824029 B =12908.436507 C =13927.518136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.063 0.937 4 C -0.116 4.116 5 C -0.114 4.114 6 C -0.108 4.108 7 H 0.127 0.873 8 C 0.521 3.479 9 O -0.580 6.580 10 N -0.719 5.719 11 C 0.114 3.886 12 C 0.111 3.889 13 O -0.533 6.533 14 C 0.016 3.984 15 N -0.469 5.469 16 C 0.015 3.985 17 C 0.450 3.550 18 O -0.609 6.609 19 N -0.591 5.591 20 C -0.328 4.328 21 H 0.054 0.946 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.965 3.035 25 H -0.256 1.256 26 H -0.275 1.275 27 H -0.232 1.232 28 C -0.015 4.015 29 C -0.108 4.108 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.412 0.588 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.388 0.612 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.121 0.879 45 H 0.390 0.610 46 H 0.279 0.721 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.056 0.944 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.337 6.617 -14.826 29.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.082 0.918 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.129 4.129 7 H 0.145 0.855 8 C 0.309 3.691 9 O -0.460 6.460 10 N -0.373 5.373 11 C -0.011 4.011 12 C 0.069 3.931 13 O -0.340 6.340 14 C -0.112 4.112 15 N -0.191 5.191 16 C -0.117 4.117 17 C 0.238 3.762 18 O -0.493 6.493 19 N -0.233 5.233 20 C -0.457 4.457 21 H 0.073 0.927 22 C -0.215 4.215 23 N -0.574 5.574 24 Si 0.785 3.215 25 H -0.181 1.181 26 H -0.200 1.200 27 H -0.155 1.155 28 C -0.145 4.145 29 C -0.146 4.146 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.248 0.752 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.238 0.762 41 H 0.131 0.869 42 H 0.121 0.879 43 H 0.111 0.889 44 H 0.138 0.862 45 H 0.225 0.775 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.075 0.925 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.867 5.824 -14.846 28.704 hybrid contribution 0.737 1.172 0.479 1.465 sum -23.130 6.996 -14.367 28.113 Atomic orbital electron populations 1.21868 0.93913 1.02347 1.01832 1.21758 0.96557 0.99122 0.94262 0.91812 1.22448 0.96707 0.99246 0.96973 1.22510 0.98392 1.01058 0.93270 1.22227 0.93632 1.01935 0.95117 0.85483 1.21064 0.84512 0.78826 0.84729 1.90684 1.76428 1.47667 1.31211 1.45849 1.24889 1.34611 1.31929 1.21789 0.87016 0.96979 0.95335 1.22301 0.90346 0.85172 0.95328 1.86613 1.36181 1.30748 1.80488 1.24115 0.90167 1.03821 0.93115 1.68884 0.99636 1.42432 1.08178 1.22537 0.94666 1.01245 0.93224 1.20821 0.82045 0.81828 0.91505 1.90545 1.57594 1.48480 1.52708 1.42042 1.16965 1.55230 1.09074 1.18982 1.02193 1.38750 0.85762 0.92749 1.26132 0.98033 0.97790 0.99518 1.69804 1.20924 1.46634 1.20053 0.85363 0.77817 0.79472 0.78864 1.18068 1.20016 1.15481 1.24479 0.93660 0.96634 0.99682 1.22147 0.98864 0.95859 0.97740 0.91810 0.92220 0.92831 0.91258 0.89738 0.89053 0.92559 0.75156 0.90347 0.89882 0.76181 0.86929 0.87911 0.88895 0.86154 0.77489 0.91126 0.91411 0.90281 0.92530 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.85 71.98 0.64 -0.67 16 2 C -0.10 -1.16 3.50 -10.07 -0.04 -1.20 16 3 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -1.18 6.36 31.67 0.20 -0.98 16 5 C -0.11 -1.31 6.31 31.88 0.20 -1.11 16 6 C -0.11 -1.34 3.25 -10.46 -0.03 -1.38 16 7 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 8 C 0.52 9.48 7.13 87.66 0.62 10.11 16 9 O -0.58 -15.58 15.42 -3.05 -0.05 -15.63 16 10 N -0.72 -10.30 5.31 -463.06 -2.46 -12.75 16 11 C 0.11 1.87 5.36 86.38 0.46 2.33 16 12 C 0.11 2.17 1.64 -10.45 -0.02 2.15 16 13 O -0.53 -10.93 13.56 -148.98 -2.02 -12.95 16 14 C 0.02 0.33 7.14 83.58 0.60 0.93 16 15 N -0.47 -14.17 6.06 -932.81 -5.66 -19.83 16 16 C 0.01 0.45 5.31 85.56 0.45 0.91 16 17 C 0.45 20.47 7.62 87.66 0.67 21.14 16 18 O -0.61 -34.10 15.34 -3.07 -0.05 -34.14 16 19 N -0.59 -27.94 5.09 -306.97 -1.56 -29.50 16 20 C -0.33 -19.26 10.16 84.04 0.85 -18.40 16 21 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 22 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 23 N -0.93 -56.37 13.96 21.66 0.30 -56.06 16 24 Si 0.96 38.71 27.74 68.60 1.90 40.61 16 25 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 26 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 27 H -0.23 -7.81 6.51 99.48 0.65 -7.16 16 28 C -0.02 -0.41 6.14 83.58 0.51 0.10 16 29 C -0.11 -1.57 5.84 31.32 0.18 -1.38 16 30 H 0.06 0.50 8.12 -2.39 -0.02 0.48 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.08 0.65 7.83 -2.39 -0.02 0.63 16 35 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.06 0.85 8.05 -2.39 -0.02 0.84 16 37 H 0.41 3.92 7.25 -92.71 -0.67 3.25 16 38 H 0.08 1.39 8.00 -2.39 -0.02 1.37 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.39 4.72 7.50 -74.06 -0.56 4.17 16 41 H 0.11 1.61 7.73 -2.39 -0.02 1.59 16 42 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 43 H 0.09 2.19 7.56 -2.38 -0.02 2.17 16 44 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 45 H 0.39 15.15 5.76 -92.71 -0.53 14.62 16 46 H 0.28 15.39 8.31 -92.70 -0.77 14.62 16 47 H 0.07 2.22 8.13 -2.38 -0.02 2.20 16 48 H 0.08 2.02 7.56 -2.39 -0.02 2.00 16 49 H 0.06 1.14 6.85 -2.39 -0.02 1.12 16 50 H 0.07 0.96 7.67 -2.39 -0.02 0.95 16 Total: -1.00 -85.50 400.30 -4.66 -90.16 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: -0.85 Total: 37.97 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 5.78 Total: 12.12 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -9.37 Total: -118.14 kcal Atomic # 8 Polarization: -60.60 SS G_CDS: -2.11 Total: -62.72 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 1.90 Total: 40.61 kcal Total: -85.50 -4.66 -90.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484299192.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.782 kcal (2) G-P(sol) polarization free energy of solvation -85.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds