Wall clock time and date at job start Sat Apr 11 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.52353 * 2 1 4 4 C 1.53039 * 109.49906 * 239.91868 * 2 1 3 5 5 C 1.53040 * 109.53937 * 178.68490 * 4 2 1 6 6 C 1.53197 * 109.31331 * 61.36249 * 5 4 2 7 7 N 1.46963 * 108.88782 * 305.44110 * 6 5 4 8 8 C 1.34775 * 120.65964 * 233.53203 * 7 6 5 9 9 O 1.21340 * 120.00024 * 165.59959 * 8 7 6 10 10 C 1.49453 * 119.99652 * 345.60267 * 8 7 6 11 11 O 1.21357 * 119.99647 * 353.87368 * 10 8 7 12 12 N 1.34769 * 120.00130 * 173.87789 * 10 8 7 13 13 C 1.46502 * 120.00078 * 184.92891 * 12 10 8 14 14 C 1.53007 * 112.93796 * 294.15369 * 13 12 10 15 15 C 1.53000 * 109.47245 * 306.26171 * 14 13 12 16 16 O 1.42896 * 109.46943 * 185.15116 * 15 14 13 17 17 C 1.53944 * 113.74222 * 162.56844 * 13 12 10 18 18 N 1.47816 * 86.03547 * 222.07824 * 17 13 12 19 19 C 1.36937 * 134.45702 * 204.64373 * 18 17 13 20 20 H 1.08001 * 119.99562 * 179.86615 * 19 18 17 21 21 C 1.38807 * 119.99897 * 359.86788 * 19 18 17 22 22 N 1.31615 * 120.00044 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99840 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47132 * 89.99868 * 23 21 19 25 25 H 1.48493 * 109.47199 * 209.99562 * 23 21 19 26 26 H 1.48499 * 109.46887 * 329.99842 * 23 21 19 27 27 C 1.47580 * 91.04813 * 24.54909 * 18 17 13 28 28 C 1.46930 * 118.71221 * 53.35634 * 7 6 5 29 29 H 1.09007 * 109.47203 * 299.92203 * 1 2 3 30 30 H 1.09002 * 109.46946 * 59.91977 * 1 2 3 31 31 H 1.08998 * 109.47207 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.45731 * 298.69968 * 4 2 1 33 33 H 1.08996 * 109.46256 * 58.65646 * 4 2 1 34 34 H 1.08999 * 109.50032 * 181.31138 * 5 4 2 35 35 H 1.09003 * 109.49598 * 301.37986 * 5 4 2 36 36 H 1.08996 * 109.58541 * 65.15146 * 6 5 4 37 37 H 1.08995 * 109.58468 * 185.43674 * 6 5 4 38 38 H 0.96999 * 119.99834 * 4.91700 * 12 10 8 39 39 H 1.09002 * 109.46775 * 66.26589 * 14 13 12 40 40 H 1.09000 * 109.46321 * 186.26137 * 14 13 12 41 41 H 1.08996 * 109.47171 * 305.15459 * 15 14 13 42 42 H 1.08995 * 109.46664 * 65.15419 * 15 14 13 43 43 H 0.96701 * 114.00069 * 179.97438 * 16 15 14 44 44 H 1.08995 * 113.77064 * 336.34088 * 17 13 12 45 45 H 1.08996 * 113.77232 * 107.73913 * 17 13 12 46 46 H 0.97005 * 119.99955 * 180.02562 * 22 21 19 47 47 H 1.09005 * 113.76909 * 221.15462 * 27 18 17 48 48 H 1.08999 * 113.76991 * 89.75594 * 27 18 17 49 49 H 1.09000 * 109.58596 * 186.77908 * 28 7 6 50 50 H 1.09007 * 109.58812 * 66.50118 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6950 -1.2659 6 6 4.1053 -1.4267 -0.0306 7 7 3.5045 -0.8320 1.1715 8 6 4.2806 -0.3911 2.1814 9 8 3.8096 0.3250 3.0403 10 6 5.7212 -0.7841 2.2432 11 8 6.1654 -1.5875 1.4495 12 7 6.5268 -0.2464 3.1803 13 6 7.9604 -0.5480 3.1743 14 6 8.2617 -2.0187 3.4698 15 6 7.5818 -2.4256 4.7787 16 8 7.9601 -3.7614 5.1167 17 6 8.8043 0.4365 4.0041 18 7 9.7714 0.3890 2.8872 19 6 11.1177 0.6125 2.7742 20 1 11.6040 0.5067 1.8157 21 6 11.8573 0.9749 3.8915 22 7 11.2645 1.1042 5.0595 23 14 13.6937 1.2803 3.7372 24 1 13.9327 2.7118 3.4222 25 1 14.3620 0.9372 5.0181 26 1 14.2463 0.4350 2.6485 27 6 8.7044 0.0021 1.9440 28 6 2.0413 -0.7237 1.2496 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6968 -1.7573 -1.2352 33 1 1.6582 -0.2246 -2.1389 34 1 3.9335 -1.1898 -2.1669 35 1 3.9159 0.3389 -1.2546 36 1 3.8375 -2.4818 -0.0866 37 1 5.1898 -1.3267 0.0125 38 1 6.1574 0.3403 3.8586 39 1 7.8835 -2.6376 2.6562 40 1 9.3389 -2.1575 3.5615 41 1 7.8908 -1.7480 5.5745 42 1 6.4998 -2.3740 4.6573 43 1 7.5655 -4.0862 5.9376 44 1 8.3361 1.4115 4.1386 45 1 9.1844 0.0138 4.9341 46 1 11.7813 1.3578 5.8403 47 1 9.0049 -0.7669 1.2322 48 1 8.2068 0.8492 1.4720 49 1 1.7638 -0.1578 2.1389 50 1 1.6032 -1.7206 1.2995 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485418626.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:49 Heat of formation + Delta-G solvation = -59.136204 kcal Electronic energy + Delta-G solvation = -31145.218558 eV Core-core repulsion = 26981.577528 eV Total energy + Delta-G solvation = -4163.641029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.98925 -39.56694 -38.00457 -37.60297 -36.39202 -34.29956 -33.45350 -32.11366 -31.91176 -30.38656 -27.58109 -27.13245 -26.23520 -25.14201 -24.10336 -22.86506 -22.52565 -21.55165 -20.52868 -19.62685 -18.76048 -17.58387 -17.12579 -16.85742 -16.76030 -15.98833 -15.59347 -15.31210 -15.23126 -14.78230 -14.65408 -14.43779 -14.30489 -13.94605 -13.78867 -13.66939 -13.44195 -13.21463 -12.87855 -12.58129 -12.40066 -12.16372 -11.99630 -11.78202 -11.66417 -11.50114 -11.32100 -11.13813 -11.06652 -10.96368 -10.86875 -10.77902 -10.71793 -10.66325 -10.14880 -9.96421 -9.69233 -9.54110 -9.08877 -8.95847 -8.82813 -8.71811 -6.98029 -5.83560 -3.16160 1.49783 2.36998 3.28366 3.37681 3.42582 3.44816 3.54613 4.31697 4.41728 4.44378 4.48089 4.54911 4.59764 4.79797 5.04111 5.10331 5.12258 5.14144 5.22094 5.29665 5.40309 5.44870 5.45330 5.50667 5.51544 5.68475 5.68770 5.70830 5.74997 5.79961 5.85876 5.90295 5.90843 6.10447 6.21445 6.26403 6.40719 6.40994 6.55073 6.66409 6.77735 6.98702 7.06484 7.19018 7.43467 7.45628 7.81157 7.88531 7.90153 8.19541 8.97605 9.63976 10.48443 11.33933 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017172 B = 0.002782 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.136882 B =10061.151141 C =10714.106287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.084 3.916 7 N -0.588 5.588 8 C 0.510 3.490 9 O -0.523 6.523 10 C 0.505 3.495 11 O -0.511 6.511 12 N -0.680 5.680 13 C 0.119 3.881 14 C -0.095 4.095 15 C 0.082 3.918 16 O -0.573 6.573 17 C 0.167 3.833 18 N -0.602 5.602 19 C -0.221 4.221 20 H 0.083 0.917 21 C -0.006 4.006 22 N -0.921 5.921 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.127 3.873 28 C 0.114 3.886 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.131 0.869 38 H 0.409 0.591 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.049 0.951 42 H 0.034 0.966 43 H 0.373 0.627 44 H 0.034 0.966 45 H 0.085 0.915 46 H 0.255 0.745 47 H 0.055 0.945 48 H 0.036 0.964 49 H 0.092 0.908 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.871 -5.310 -7.567 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.094 0.906 4 C -0.153 4.153 5 C -0.176 4.176 6 C -0.038 4.038 7 N -0.322 5.322 8 C 0.292 3.708 9 O -0.399 6.399 10 C 0.286 3.714 11 O -0.388 6.388 12 N -0.332 5.332 13 C 0.033 3.967 14 C -0.134 4.134 15 C 0.005 3.995 16 O -0.378 6.378 17 C 0.041 3.959 18 N -0.329 5.329 19 C -0.349 4.349 20 H 0.101 0.899 21 C -0.202 4.202 22 N -0.568 5.568 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.000 4.000 28 C -0.009 4.009 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.149 0.851 38 H 0.245 0.755 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.218 0.782 44 H 0.052 0.948 45 H 0.103 0.897 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.054 0.946 49 H 0.110 0.890 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.083 -5.348 -8.104 22.307 hybrid contribution 0.257 0.654 0.731 1.014 sum -19.826 -4.694 -7.372 21.667 Atomic orbital electron populations 1.21765 0.94308 1.02043 1.02133 1.21502 0.95950 1.00304 0.94873 0.90612 1.21617 0.95629 1.00716 0.97383 1.21978 0.95697 1.01626 0.98261 1.22566 1.02476 0.96567 0.82181 1.47896 1.06480 1.59937 1.17909 1.20440 0.87759 0.80343 0.82213 1.90729 1.75011 1.34411 1.39723 1.20028 0.86489 0.82326 0.82604 1.90578 1.75724 1.32921 1.39590 1.46113 1.08909 1.47925 1.30291 1.23253 0.75875 0.96101 1.01469 1.21359 1.02879 0.93015 0.96101 1.22110 0.96947 0.82877 0.97598 1.86490 1.74552 1.30820 1.45939 1.22614 0.85805 0.93430 0.94083 1.45670 1.02152 1.80822 1.04239 1.18986 0.80405 1.40380 0.95110 0.89902 1.24785 0.98352 1.01638 0.95458 1.69780 1.34753 1.53305 0.98939 0.86082 0.84511 0.77954 0.76995 1.21594 1.21572 1.20509 1.22823 0.88352 0.96118 0.92701 1.21766 0.78817 1.00925 0.99350 0.92346 0.92254 0.92463 0.91722 0.91700 0.90387 0.91554 0.91379 0.85133 0.75485 0.90522 0.88772 0.93240 0.94787 0.78179 0.94823 0.89728 0.93494 0.92707 0.94606 0.88952 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.20 37.16 0.34 -0.54 16 2 C -0.11 -0.84 2.87 -90.50 -0.26 -1.10 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.12 -0.84 5.17 -26.69 -0.14 -0.98 16 5 C -0.14 -1.17 6.08 -26.61 -0.16 -1.33 16 6 C 0.08 0.89 5.82 -3.69 -0.02 0.86 16 7 N -0.59 -6.93 2.98 -173.24 -0.52 -7.44 16 8 C 0.51 7.28 7.68 -11.58 -0.09 7.19 16 9 O -0.52 -8.31 15.98 5.51 0.09 -8.22 16 10 C 0.51 7.77 7.36 -11.59 -0.09 7.69 16 11 O -0.51 -8.41 11.70 5.49 0.06 -8.34 16 12 N -0.68 -10.73 4.58 -49.50 -0.23 -10.96 16 13 C 0.12 2.21 0.68 -134.03 -0.09 2.12 16 14 C -0.10 -1.77 4.80 -26.73 -0.13 -1.90 16 15 C 0.08 1.34 6.75 37.16 0.25 1.59 16 16 O -0.57 -9.12 13.66 -35.23 -0.48 -9.60 16 17 C 0.17 3.71 6.66 -2.84 -0.02 3.69 16 18 N -0.60 -15.01 3.55 -177.51 -0.63 -15.65 16 19 C -0.22 -6.08 10.70 -15.06 -0.16 -6.24 16 20 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 22 N -0.92 -26.47 11.39 55.49 0.63 -25.83 16 23 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.13 2.64 7.72 -2.97 -0.02 2.62 16 28 C 0.11 1.08 5.72 -3.71 -0.02 1.06 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.13 1.66 4.72 -52.56 -0.25 1.41 16 38 H 0.41 5.99 8.19 -40.82 -0.33 5.66 16 39 H 0.08 1.46 6.89 -51.93 -0.36 1.10 16 40 H 0.09 2.04 8.01 -51.93 -0.42 1.62 16 41 H 0.05 0.81 7.59 -51.93 -0.39 0.41 16 42 H 0.03 0.51 7.81 -51.93 -0.41 0.11 16 43 H 0.37 3.95 9.12 45.56 0.42 4.37 16 44 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 2.06 6.69 -51.93 -0.35 1.72 16 46 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.05 1.14 8.10 -51.93 -0.42 0.72 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.09 0.97 7.04 -51.93 -0.37 0.61 16 50 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 LS Contribution 395.42 15.07 5.96 5.96 Total: -1.00 -31.91 395.42 -8.33 -40.24 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -7.49 Total: 8.51 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: -0.70 Total: 14.47 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: -0.74 Total: -59.89 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.33 Total: -26.16 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.91 -8.33 -40.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485418626.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.892 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds