Wall clock time and date at job start Sat Apr 11 2020 05:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.52353 * 2 1 4 4 C 1.53039 * 109.49906 * 239.91868 * 2 1 3 5 5 C 1.53040 * 109.53937 * 178.68490 * 4 2 1 6 6 C 1.53197 * 109.31331 * 61.36249 * 5 4 2 7 7 N 1.46963 * 108.88782 * 305.44110 * 6 5 4 8 8 C 1.34775 * 120.65964 * 233.53203 * 7 6 5 9 9 O 1.21340 * 120.00024 * 165.59959 * 8 7 6 10 10 C 1.49453 * 119.99652 * 345.60267 * 8 7 6 11 11 O 1.21357 * 119.99647 * 353.87368 * 10 8 7 12 12 N 1.34769 * 120.00130 * 173.87789 * 10 8 7 13 13 C 1.46502 * 120.00078 * 184.92891 * 12 10 8 14 14 C 1.53007 * 112.93796 * 294.15369 * 13 12 10 15 15 C 1.53000 * 109.47245 * 306.26171 * 14 13 12 16 16 O 1.42896 * 109.46943 * 185.15116 * 15 14 13 17 17 C 1.53944 * 113.74222 * 162.56844 * 13 12 10 18 18 N 1.47816 * 86.03547 * 222.07824 * 17 13 12 19 19 C 1.36937 * 134.45702 * 204.64373 * 18 17 13 20 20 H 1.08001 * 119.99562 * 179.86615 * 19 18 17 21 21 C 1.38807 * 119.99897 * 359.86788 * 19 18 17 22 22 N 1.31615 * 120.00044 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99840 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47132 * 89.99868 * 23 21 19 25 25 H 1.48493 * 109.47199 * 209.99562 * 23 21 19 26 26 H 1.48499 * 109.46887 * 329.99842 * 23 21 19 27 27 C 1.47580 * 91.04813 * 24.54909 * 18 17 13 28 28 C 1.46930 * 118.71221 * 53.35634 * 7 6 5 29 29 H 1.09007 * 109.47203 * 299.92203 * 1 2 3 30 30 H 1.09002 * 109.46946 * 59.91977 * 1 2 3 31 31 H 1.08998 * 109.47207 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.45731 * 298.69968 * 4 2 1 33 33 H 1.08996 * 109.46256 * 58.65646 * 4 2 1 34 34 H 1.08999 * 109.50032 * 181.31138 * 5 4 2 35 35 H 1.09003 * 109.49598 * 301.37986 * 5 4 2 36 36 H 1.08996 * 109.58541 * 65.15146 * 6 5 4 37 37 H 1.08995 * 109.58468 * 185.43674 * 6 5 4 38 38 H 0.96999 * 119.99834 * 4.91700 * 12 10 8 39 39 H 1.09002 * 109.46775 * 66.26589 * 14 13 12 40 40 H 1.09000 * 109.46321 * 186.26137 * 14 13 12 41 41 H 1.08996 * 109.47171 * 305.15459 * 15 14 13 42 42 H 1.08995 * 109.46664 * 65.15419 * 15 14 13 43 43 H 0.96701 * 114.00069 * 179.97438 * 16 15 14 44 44 H 1.08995 * 113.77064 * 336.34088 * 17 13 12 45 45 H 1.08996 * 113.77232 * 107.73913 * 17 13 12 46 46 H 0.97005 * 119.99955 * 180.02562 * 22 21 19 47 47 H 1.09005 * 113.76909 * 221.15462 * 27 18 17 48 48 H 1.08999 * 113.76991 * 89.75594 * 27 18 17 49 49 H 1.09000 * 109.58596 * 186.77908 * 28 7 6 50 50 H 1.09007 * 109.58812 * 66.50118 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6950 -1.2659 6 6 4.1053 -1.4267 -0.0306 7 7 3.5045 -0.8320 1.1715 8 6 4.2806 -0.3911 2.1814 9 8 3.8096 0.3250 3.0403 10 6 5.7212 -0.7841 2.2432 11 8 6.1654 -1.5875 1.4495 12 7 6.5268 -0.2464 3.1803 13 6 7.9604 -0.5480 3.1743 14 6 8.2617 -2.0187 3.4698 15 6 7.5818 -2.4256 4.7787 16 8 7.9601 -3.7614 5.1167 17 6 8.8043 0.4365 4.0041 18 7 9.7714 0.3890 2.8872 19 6 11.1177 0.6125 2.7742 20 1 11.6040 0.5067 1.8157 21 6 11.8573 0.9749 3.8915 22 7 11.2645 1.1042 5.0595 23 14 13.6937 1.2803 3.7372 24 1 13.9327 2.7118 3.4222 25 1 14.3620 0.9372 5.0181 26 1 14.2463 0.4350 2.6485 27 6 8.7044 0.0021 1.9440 28 6 2.0413 -0.7237 1.2496 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6968 -1.7573 -1.2352 33 1 1.6582 -0.2246 -2.1389 34 1 3.9335 -1.1898 -2.1669 35 1 3.9159 0.3389 -1.2546 36 1 3.8375 -2.4818 -0.0866 37 1 5.1898 -1.3267 0.0125 38 1 6.1574 0.3403 3.8586 39 1 7.8835 -2.6376 2.6562 40 1 9.3389 -2.1575 3.5615 41 1 7.8908 -1.7480 5.5745 42 1 6.4998 -2.3740 4.6573 43 1 7.5655 -4.0862 5.9376 44 1 8.3361 1.4115 4.1386 45 1 9.1844 0.0138 4.9341 46 1 11.7813 1.3578 5.8403 47 1 9.0049 -0.7669 1.2322 48 1 8.2068 0.8492 1.4720 49 1 1.7638 -0.1578 2.1389 50 1 1.6032 -1.7206 1.2995 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485418626.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:48 Heat of formation + Delta-G solvation = -82.635411 kcal Electronic energy + Delta-G solvation = -31146.237560 eV Core-core repulsion = 26981.577528 eV Total energy + Delta-G solvation = -4164.660031 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.19187 -40.89842 -39.21237 -38.73538 -37.72092 -35.56500 -34.63553 -33.75572 -32.83343 -31.93353 -29.13325 -28.22880 -27.12608 -26.90812 -25.50593 -24.17915 -23.25546 -23.19846 -21.51488 -20.61796 -20.25950 -18.82403 -18.71227 -18.37582 -17.91339 -17.16266 -17.07063 -16.69114 -16.42230 -16.13664 -15.86260 -15.68801 -15.32412 -15.24005 -15.06148 -14.76785 -14.47172 -14.37099 -14.08005 -13.84965 -13.57646 -13.40971 -13.28740 -13.05389 -12.89914 -12.82471 -12.72851 -12.56753 -12.45969 -12.24879 -12.06615 -12.00773 -11.79085 -11.74464 -11.64062 -11.43857 -11.31196 -10.95557 -10.88557 -10.36378 -10.15143 -9.76286 -8.99099 -7.93623 -5.27396 0.30768 1.23521 1.47126 1.48425 1.56991 2.08542 2.34541 2.51742 3.07672 3.19052 3.27135 3.45263 3.53633 3.75831 3.85502 3.93357 4.08297 4.10837 4.20702 4.27901 4.32602 4.41454 4.44082 4.58006 4.64844 4.66802 4.68143 4.78887 4.82067 4.82624 4.88557 4.90098 5.04883 5.07868 5.10694 5.11847 5.17503 5.19602 5.28354 5.30776 5.38855 5.45376 5.49731 5.60029 5.86513 5.96913 6.23542 6.67088 6.87974 6.88372 6.93804 7.56021 8.47296 9.23295 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017172 B = 0.002782 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.136882 B =10061.151141 C =10714.106287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.059 0.941 4 C -0.112 4.112 5 C -0.133 4.133 6 C 0.081 3.919 7 N -0.581 5.581 8 C 0.510 3.490 9 O -0.544 6.544 10 C 0.508 3.492 11 O -0.520 6.520 12 N -0.678 5.678 13 C 0.151 3.849 14 C -0.088 4.088 15 C 0.091 3.909 16 O -0.589 6.589 17 C 0.170 3.830 18 N -0.629 5.629 19 C -0.235 4.235 20 H 0.084 0.916 21 C -0.060 4.060 22 N -0.948 5.948 23 Si 0.979 3.021 24 H -0.286 1.286 25 H -0.293 1.293 26 H -0.270 1.270 27 C 0.127 3.873 28 C 0.109 3.891 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.417 0.583 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.052 0.948 43 H 0.396 0.604 44 H 0.031 0.969 45 H 0.061 0.939 46 H 0.251 0.749 47 H 0.054 0.946 48 H 0.043 0.957 49 H 0.081 0.919 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.739 -6.149 -8.855 25.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.078 0.922 4 C -0.149 4.149 5 C -0.172 4.172 6 C -0.040 4.040 7 N -0.314 5.314 8 C 0.292 3.708 9 O -0.422 6.422 10 C 0.289 3.711 11 O -0.397 6.397 12 N -0.331 5.331 13 C 0.065 3.935 14 C -0.127 4.127 15 C 0.014 3.986 16 O -0.397 6.397 17 C 0.044 3.956 18 N -0.356 5.356 19 C -0.363 4.363 20 H 0.102 0.898 21 C -0.253 4.253 22 N -0.596 5.596 23 Si 0.807 3.193 24 H -0.213 1.213 25 H -0.219 1.219 26 H -0.195 1.195 27 C 0.001 3.999 28 C -0.012 4.012 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.254 0.746 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.246 0.754 44 H 0.049 0.951 45 H 0.079 0.921 46 H 0.060 0.940 47 H 0.073 0.927 48 H 0.061 0.939 49 H 0.099 0.901 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.009 -6.212 -9.426 24.735 hybrid contribution 0.761 0.860 1.054 1.558 sum -21.248 -5.352 -8.372 23.456 Atomic orbital electron populations 1.21733 0.92649 1.02902 1.02506 1.21472 0.97238 0.99191 0.94355 0.92236 1.21612 0.94351 1.01523 0.97424 1.21956 0.96834 1.00686 0.97681 1.22596 1.01290 0.97592 0.82501 1.48047 1.07431 1.58560 1.17313 1.20117 0.87107 0.80707 0.82829 1.90726 1.75068 1.35612 1.40754 1.20266 0.87085 0.81859 0.81897 1.90598 1.76188 1.33215 1.39690 1.45873 1.07605 1.48530 1.31053 1.22527 0.77209 0.95168 0.98641 1.21221 1.00921 0.92838 0.97683 1.21934 0.97475 0.83219 0.96016 1.86429 1.75227 1.30316 1.47774 1.22472 0.86044 0.94030 0.93069 1.45942 1.02348 1.81014 1.06249 1.19322 0.81996 1.39729 0.95250 0.89816 1.25578 1.02424 1.02071 0.95259 1.69945 1.35958 1.54399 0.99332 0.85081 0.79625 0.77783 0.76846 1.21309 1.21900 1.19462 1.22906 0.87629 0.96265 0.93089 1.21996 0.77179 1.02146 0.99862 0.92524 0.91411 0.91335 0.90459 0.90398 0.88818 0.92812 0.90058 0.87293 0.74608 0.90655 0.92170 0.93549 0.92978 0.75400 0.95090 0.92114 0.94006 0.92733 0.93918 0.90099 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.20 71.98 0.66 -0.67 16 2 C -0.10 -1.40 2.87 -10.72 -0.03 -1.43 16 3 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 4 C -0.11 -1.28 5.17 30.62 0.16 -1.12 16 5 C -0.13 -1.99 6.08 30.67 0.19 -1.80 16 6 C 0.08 1.58 5.82 86.36 0.50 2.09 16 7 N -0.58 -12.83 2.98 -820.38 -2.44 -15.28 16 8 C 0.51 14.12 7.68 87.27 0.67 14.79 16 9 O -0.54 -16.93 15.98 -3.22 -0.05 -16.98 16 10 C 0.51 15.27 7.36 87.27 0.64 15.92 16 11 O -0.52 -16.71 11.70 -3.27 -0.04 -16.75 16 12 N -0.68 -21.17 4.58 -428.87 -1.96 -23.14 16 13 C 0.15 5.68 0.68 5.36 0.00 5.68 16 14 C -0.09 -3.31 4.80 30.60 0.15 -3.17 16 15 C 0.09 2.91 6.75 71.98 0.49 3.40 16 16 O -0.59 -18.10 13.66 -148.98 -2.03 -20.14 16 17 C 0.17 7.77 6.66 86.44 0.58 8.35 16 18 N -0.63 -32.08 3.55 -715.52 -2.54 -34.62 16 19 C -0.23 -13.13 10.70 84.03 0.90 -12.23 16 20 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 21 C -0.06 -3.36 5.50 84.86 0.47 -2.90 16 22 N -0.95 -55.79 11.39 21.65 0.25 -55.54 16 23 Si 0.98 45.53 29.55 68.60 2.03 47.56 16 24 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 C 0.13 5.36 7.72 86.48 0.67 6.03 16 28 C 0.11 1.87 5.72 86.36 0.49 2.36 16 29 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.11 2.67 4.72 -12.28 -0.06 2.61 16 38 H 0.42 12.07 8.19 -92.71 -0.76 11.31 16 39 H 0.07 2.85 6.89 -2.39 -0.02 2.84 16 40 H 0.06 2.69 8.01 -2.39 -0.02 2.67 16 41 H 0.05 1.51 7.59 -2.39 -0.02 1.49 16 42 H 0.05 1.48 7.81 -2.39 -0.02 1.47 16 43 H 0.40 7.74 9.12 -74.06 -0.68 7.06 16 44 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 3.08 6.69 -2.39 -0.02 3.06 16 46 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 47 H 0.05 2.29 8.10 -2.38 -0.02 2.27 16 48 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.08 1.61 7.04 -2.39 -0.02 1.59 16 50 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -69.18 395.42 -0.79 -69.98 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: -0.52 Total: 29.61 kcal Atomic # 6 Polarization: 28.76 SS G_CDS: 6.53 Total: 35.29 kcal Atomic # 7 Polarization: -121.88 SS G_CDS: -6.70 Total: -128.58 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -2.12 Total: -53.86 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -69.18 -0.79 -69.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485418626.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.659 kcal (2) G-P(sol) polarization free energy of solvation -69.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds