Wall clock time and date at job start Sat Apr 11 2020 05:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.52349 * 2 1 4 4 C 1.53037 * 109.49797 * 120.08262 * 2 1 3 5 5 C 1.53041 * 109.53657 * 181.31892 * 4 2 1 6 6 C 1.53626 * 109.24118 * 298.50525 * 5 4 2 7 7 N 1.46931 * 108.53923 * 54.86146 * 6 5 4 8 8 C 1.34771 * 120.63322 * 126.36599 * 7 6 5 9 9 O 1.21346 * 120.00257 * 184.78960 * 8 7 6 10 10 C 1.49455 * 119.99789 * 4.78841 * 8 7 6 11 11 O 1.21345 * 120.00121 * 6.54217 * 10 8 7 12 12 N 1.34779 * 119.99798 * 186.53516 * 10 8 7 13 13 C 1.46505 * 119.99498 * 184.71772 * 12 10 8 14 14 C 1.52993 * 113.28453 * 285.10211 * 13 12 10 15 15 C 1.53002 * 109.47217 * 315.82656 * 14 13 12 16 16 O 1.42898 * 109.47326 * 185.10184 * 15 14 13 17 17 C 1.53496 * 114.20444 * 58.17279 * 13 12 10 18 18 N 1.47065 * 87.98774 * 87.51690 * 17 13 12 19 19 C 1.36946 * 136.05701 * 207.09025 * 18 17 13 20 20 H 1.08002 * 119.99653 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.99742 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00383 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99595 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46977 * 179.97438 * 23 21 19 25 25 H 1.48502 * 109.46809 * 299.99362 * 23 21 19 26 26 H 1.48504 * 109.47337 * 59.99406 * 23 21 19 27 27 C 1.47061 * 87.88754 * 27.34143 * 18 17 13 28 28 C 1.46930 * 118.73759 * 306.09200 * 7 6 5 29 29 H 1.09000 * 109.47372 * 180.08349 * 1 2 3 30 30 H 1.09005 * 109.47426 * 300.08203 * 1 2 3 31 31 H 1.08999 * 109.47676 * 60.07993 * 1 2 3 32 32 H 1.09002 * 109.46244 * 301.34039 * 4 2 1 33 33 H 1.09000 * 109.45825 * 61.29695 * 4 2 1 34 34 H 1.08994 * 109.50081 * 58.58935 * 5 4 2 35 35 H 1.09000 * 109.49744 * 178.68861 * 5 4 2 36 36 H 1.08997 * 109.74403 * 295.12698 * 6 5 4 37 37 H 1.09001 * 109.66299 * 174.54879 * 6 5 4 38 38 H 0.96996 * 120.00286 * 4.72581 * 12 10 8 39 39 H 1.08996 * 109.47414 * 75.82938 * 14 13 12 40 40 H 1.09004 * 109.47184 * 195.83444 * 14 13 12 41 41 H 1.08998 * 109.47254 * 305.11098 * 15 14 13 42 42 H 1.09008 * 109.46618 * 65.11031 * 15 14 13 43 43 H 0.96697 * 114.00299 * 179.97438 * 16 15 14 44 44 H 1.08996 * 113.46816 * 332.73241 * 17 13 12 45 45 H 1.09004 * 113.52018 * 202.30199 * 17 13 12 46 46 H 0.97002 * 120.00315 * 180.02562 * 22 21 19 47 47 H 1.08994 * 113.47014 * 87.44031 * 27 18 17 48 48 H 1.08997 * 113.46973 * 217.88357 * 27 18 17 49 49 H 1.09004 * 109.58721 * 173.64930 * 28 7 6 50 50 H 1.08998 * 109.58655 * 293.93125 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 3.5708 -0.6950 1.2659 6 6 4.1050 -1.4318 0.0283 7 7 3.5046 -0.8291 -1.1696 8 6 4.2810 -0.3863 -2.1783 9 8 3.7799 0.1877 -3.1228 10 6 5.7592 -0.6022 -2.1337 11 8 6.2473 -1.2777 -1.2517 12 7 6.5500 -0.0467 -3.0731 13 6 7.9849 -0.3419 -3.0905 14 6 8.7638 0.3781 -1.9879 15 6 8.2998 1.8335 -1.9028 16 8 9.1076 2.5365 -0.9566 17 6 8.3189 -1.8340 -3.2255 18 7 8.2556 -1.6630 -4.6848 19 6 7.9739 -2.4629 -5.7600 20 1 7.7217 -3.5021 -5.6085 21 6 8.0125 -1.9381 -7.0445 22 7 8.3193 -0.6716 -7.2291 23 14 7.6290 -3.0295 -8.5112 24 1 7.7377 -2.2352 -9.7611 25 1 8.5945 -4.1569 -8.5551 26 1 6.2494 -3.5640 -8.3832 27 6 8.6340 -0.2565 -4.4818 28 6 2.0412 -0.7237 -1.2496 29 1 -0.3634 -1.0276 0.0015 30 1 -0.3634 0.5151 0.8893 31 1 -0.3634 0.5126 -0.8907 32 1 1.6581 -0.2246 2.1389 33 1 1.6967 -1.7573 1.2352 34 1 3.9159 0.3389 1.2541 35 1 3.9334 -1.1897 2.1669 36 1 3.8338 -2.4861 0.0819 37 1 5.1896 -1.3332 -0.0176 38 1 6.1692 0.5485 -3.7376 39 1 8.5843 -0.1169 -1.0336 40 1 9.8290 0.3493 -2.2175 41 1 8.3949 2.3031 -2.8818 42 1 7.2576 1.8645 -1.5846 43 1 8.8695 3.4678 -0.8511 44 1 7.5429 -2.4899 -2.8312 45 1 9.3136 -2.0918 -2.8615 46 1 8.3460 -0.3048 -8.1266 47 1 9.7118 -0.0973 -4.4489 48 1 8.1263 0.4316 -5.1577 49 1 1.7637 -0.1578 -2.1389 50 1 1.6053 -1.7214 -1.3006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485418627.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:53 Heat of formation + Delta-G solvation = -49.039152 kcal Electronic energy + Delta-G solvation = -31477.877765 eV Core-core repulsion = 27314.674577 eV Total energy + Delta-G solvation = -4163.203188 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.94701 -39.57986 -37.91357 -37.53092 -36.60262 -34.17813 -33.35249 -32.02115 -31.91979 -30.69187 -27.48421 -27.13017 -26.16863 -24.90318 -24.05126 -23.14038 -22.44677 -21.22985 -20.56364 -19.62504 -18.95207 -17.53073 -17.23324 -16.74285 -16.71391 -15.82412 -15.42432 -15.28225 -15.21737 -14.75359 -14.56714 -14.51784 -14.23211 -13.98637 -13.71490 -13.66417 -13.33429 -13.19881 -12.85571 -12.78032 -12.67305 -12.32345 -12.01450 -11.75975 -11.46892 -11.39790 -11.27180 -11.23696 -11.06369 -11.01251 -10.85847 -10.76217 -10.65660 -10.56635 -10.13461 -9.92786 -9.70730 -9.36323 -9.07674 -8.81159 -8.75031 -8.63238 -6.94403 -5.81650 -3.13700 1.63905 2.46967 3.39128 3.39502 3.43270 3.44096 3.66140 4.29388 4.41501 4.45927 4.55234 4.59753 4.67179 4.87763 4.98449 5.12817 5.17280 5.22992 5.29541 5.35327 5.38849 5.43072 5.48478 5.50452 5.52869 5.62147 5.67484 5.75008 5.81442 5.84751 5.87410 5.92773 5.96879 6.16459 6.18706 6.24445 6.34828 6.40390 6.48871 6.56118 6.76502 7.03066 7.10433 7.20093 7.42194 7.56645 7.70885 7.91175 7.96062 8.30424 8.98931 9.65741 10.55661 11.36049 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010780 B = 0.003651 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.856940 B = 7666.435035 C = 9325.889336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 H 0.074 0.926 4 C -0.117 4.117 5 C -0.134 4.134 6 C 0.058 3.942 7 N -0.584 5.584 8 C 0.508 3.492 9 O -0.520 6.520 10 C 0.513 3.487 11 O -0.515 6.515 12 N -0.649 5.649 13 C 0.110 3.890 14 C -0.108 4.108 15 C 0.081 3.919 16 O -0.576 6.576 17 C 0.123 3.877 18 N -0.606 5.606 19 C -0.216 4.216 20 H 0.081 0.919 21 C -0.005 4.005 22 N -0.921 5.921 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.285 1.285 26 H -0.284 1.284 27 C 0.160 3.840 28 C 0.111 3.889 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.154 0.846 38 H 0.414 0.586 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.049 0.951 42 H 0.039 0.961 43 H 0.374 0.626 44 H 0.052 0.948 45 H 0.046 0.954 46 H 0.255 0.745 47 H 0.044 0.956 48 H 0.078 0.922 49 H 0.093 0.907 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.385 4.973 17.477 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 H 0.092 0.908 4 C -0.154 4.154 5 C -0.172 4.172 6 C -0.063 4.063 7 N -0.318 5.318 8 C 0.291 3.709 9 O -0.395 6.395 10 C 0.294 3.706 11 O -0.394 6.394 12 N -0.299 5.299 13 C 0.022 3.978 14 C -0.147 4.147 15 C 0.003 3.997 16 O -0.381 6.381 17 C -0.004 4.004 18 N -0.331 5.331 19 C -0.343 4.343 20 H 0.098 0.902 21 C -0.202 4.202 22 N -0.568 5.568 23 Si 0.744 3.256 24 H -0.215 1.215 25 H -0.211 1.211 26 H -0.211 1.211 27 C 0.034 3.966 28 C -0.011 4.011 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.170 0.830 38 H 0.250 0.750 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.220 0.780 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.096 0.904 49 H 0.112 0.888 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.064 4.102 17.199 20.345 hybrid contribution -0.772 0.121 -1.229 1.456 sum -10.836 4.223 15.971 19.756 Atomic orbital electron populations 1.21765 0.94354 1.02081 1.02061 1.21487 0.95905 1.00147 0.94928 0.90758 1.21629 0.95824 1.00694 0.97276 1.22007 0.95485 1.01381 0.98320 1.23215 1.04710 0.96180 0.82183 1.47929 1.06408 1.59243 1.18205 1.20271 0.88187 0.79577 0.82880 1.90759 1.75076 1.40441 1.33269 1.19917 0.87118 0.80831 0.82714 1.90345 1.75022 1.39792 1.34268 1.45247 1.07666 1.46416 1.30528 1.22275 0.79137 0.98281 0.98069 1.21616 1.00498 0.93128 0.99467 1.22133 0.93062 0.93071 0.91406 1.86468 1.60929 1.26669 1.64066 1.22632 0.98714 0.92352 0.86663 1.45499 1.79504 1.07925 1.00171 1.18850 1.39922 0.92161 0.83411 0.90161 1.24755 1.01821 0.96488 0.97113 1.69768 1.54068 1.11944 1.21022 0.86178 0.78214 0.79304 0.81944 1.21493 1.21147 1.21075 1.22453 0.96505 0.89440 0.88208 1.21772 0.79079 1.01056 0.99212 0.92447 0.92327 0.92323 0.91852 0.91777 0.91740 0.90658 0.91695 0.83015 0.74957 0.90590 0.89880 0.93296 0.94312 0.77980 0.92975 0.93629 0.93509 0.93804 0.90366 0.88849 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.20 37.16 0.34 -0.68 16 2 C -0.11 -0.93 2.87 -90.50 -0.26 -1.19 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.12 -0.93 5.16 -26.69 -0.14 -1.07 16 5 C -0.13 -1.22 6.10 -26.39 -0.16 -1.38 16 6 C 0.06 0.68 6.11 -3.48 -0.02 0.65 16 7 N -0.58 -7.78 2.97 -173.00 -0.51 -8.29 16 8 C 0.51 8.28 7.75 -11.59 -0.09 8.19 16 9 O -0.52 -9.64 15.92 5.50 0.09 -9.55 16 10 C 0.51 8.70 7.33 -11.58 -0.08 8.61 16 11 O -0.52 -8.83 11.35 5.50 0.06 -8.77 16 12 N -0.65 -11.39 4.24 -47.72 -0.20 -11.59 16 13 C 0.11 2.00 0.79 -131.56 -0.10 1.90 16 14 C -0.11 -1.68 5.15 -26.73 -0.14 -1.82 16 15 C 0.08 1.12 6.63 37.16 0.25 1.36 16 16 O -0.58 -7.53 13.66 -35.23 -0.48 -8.02 16 17 C 0.12 2.58 7.57 -8.51 -0.06 2.51 16 18 N -0.61 -15.20 3.78 -184.57 -0.70 -15.90 16 19 C -0.22 -6.04 10.75 -15.06 -0.16 -6.20 16 20 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 21 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 22 N -0.92 -26.62 11.50 55.49 0.64 -25.98 16 23 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.16 3.54 6.79 -8.37 -0.06 3.48 16 28 C 0.11 1.24 5.72 -3.71 -0.02 1.22 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.15 2.06 4.07 -55.95 -0.23 1.83 16 38 H 0.41 7.32 8.30 -40.82 -0.34 6.98 16 39 H 0.08 1.22 7.78 -51.93 -0.40 0.82 16 40 H 0.08 1.29 7.85 -51.93 -0.41 0.89 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.04 0.52 7.70 -51.92 -0.40 0.12 16 43 H 0.37 3.08 9.12 45.56 0.42 3.50 16 44 H 0.05 1.13 6.90 -51.93 -0.36 0.77 16 45 H 0.05 0.91 8.11 -51.93 -0.42 0.49 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.04 0.97 7.91 -51.93 -0.41 0.56 16 48 H 0.08 1.89 7.11 -51.93 -0.37 1.52 16 49 H 0.09 1.16 7.00 -51.93 -0.36 0.80 16 50 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 395.26 15.07 5.96 5.96 Total: -1.00 -32.28 395.26 -8.46 -40.74 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -7.48 Total: 8.86 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: -0.81 Total: 15.36 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -0.77 Total: -61.76 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.33 Total: -26.33 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.28 -8.46 -40.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485418627.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.298 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds