Wall clock time and date at job start Sat Apr 11 2020 05:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.52349 * 2 1 4 4 C 1.53037 * 109.49797 * 120.08262 * 2 1 3 5 5 C 1.53041 * 109.53657 * 181.31892 * 4 2 1 6 6 C 1.53626 * 109.24118 * 298.50525 * 5 4 2 7 7 N 1.46931 * 108.53923 * 54.86146 * 6 5 4 8 8 C 1.34771 * 120.63322 * 126.36599 * 7 6 5 9 9 O 1.21346 * 120.00257 * 184.78960 * 8 7 6 10 10 C 1.49455 * 119.99789 * 4.78841 * 8 7 6 11 11 O 1.21345 * 120.00121 * 6.54217 * 10 8 7 12 12 N 1.34779 * 119.99798 * 186.53516 * 10 8 7 13 13 C 1.46505 * 119.99498 * 184.71772 * 12 10 8 14 14 C 1.52993 * 113.28453 * 285.10211 * 13 12 10 15 15 C 1.53002 * 109.47217 * 315.82656 * 14 13 12 16 16 O 1.42898 * 109.47326 * 185.10184 * 15 14 13 17 17 C 1.53496 * 114.20444 * 58.17279 * 13 12 10 18 18 N 1.47065 * 87.98774 * 87.51690 * 17 13 12 19 19 C 1.36946 * 136.05701 * 207.09025 * 18 17 13 20 20 H 1.08002 * 119.99653 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.99742 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00383 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99595 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46977 * 179.97438 * 23 21 19 25 25 H 1.48502 * 109.46809 * 299.99362 * 23 21 19 26 26 H 1.48504 * 109.47337 * 59.99406 * 23 21 19 27 27 C 1.47061 * 87.88754 * 27.34143 * 18 17 13 28 28 C 1.46930 * 118.73759 * 306.09200 * 7 6 5 29 29 H 1.09000 * 109.47372 * 180.08349 * 1 2 3 30 30 H 1.09005 * 109.47426 * 300.08203 * 1 2 3 31 31 H 1.08999 * 109.47676 * 60.07993 * 1 2 3 32 32 H 1.09002 * 109.46244 * 301.34039 * 4 2 1 33 33 H 1.09000 * 109.45825 * 61.29695 * 4 2 1 34 34 H 1.08994 * 109.50081 * 58.58935 * 5 4 2 35 35 H 1.09000 * 109.49744 * 178.68861 * 5 4 2 36 36 H 1.08997 * 109.74403 * 295.12698 * 6 5 4 37 37 H 1.09001 * 109.66299 * 174.54879 * 6 5 4 38 38 H 0.96996 * 120.00286 * 4.72581 * 12 10 8 39 39 H 1.08996 * 109.47414 * 75.82938 * 14 13 12 40 40 H 1.09004 * 109.47184 * 195.83444 * 14 13 12 41 41 H 1.08998 * 109.47254 * 305.11098 * 15 14 13 42 42 H 1.09008 * 109.46618 * 65.11031 * 15 14 13 43 43 H 0.96697 * 114.00299 * 179.97438 * 16 15 14 44 44 H 1.08996 * 113.46816 * 332.73241 * 17 13 12 45 45 H 1.09004 * 113.52018 * 202.30199 * 17 13 12 46 46 H 0.97002 * 120.00315 * 180.02562 * 22 21 19 47 47 H 1.08994 * 113.47014 * 87.44031 * 27 18 17 48 48 H 1.08997 * 113.46973 * 217.88357 * 27 18 17 49 49 H 1.09004 * 109.58721 * 173.64930 * 28 7 6 50 50 H 1.08998 * 109.58655 * 293.93125 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 3.5708 -0.6950 1.2659 6 6 4.1050 -1.4318 0.0283 7 7 3.5046 -0.8291 -1.1696 8 6 4.2810 -0.3863 -2.1783 9 8 3.7799 0.1877 -3.1228 10 6 5.7592 -0.6022 -2.1337 11 8 6.2473 -1.2777 -1.2517 12 7 6.5500 -0.0467 -3.0731 13 6 7.9849 -0.3419 -3.0905 14 6 8.7638 0.3781 -1.9879 15 6 8.2998 1.8335 -1.9028 16 8 9.1076 2.5365 -0.9566 17 6 8.3189 -1.8340 -3.2255 18 7 8.2556 -1.6630 -4.6848 19 6 7.9739 -2.4629 -5.7600 20 1 7.7217 -3.5021 -5.6085 21 6 8.0125 -1.9381 -7.0445 22 7 8.3193 -0.6716 -7.2291 23 14 7.6290 -3.0295 -8.5112 24 1 7.7377 -2.2352 -9.7611 25 1 8.5945 -4.1569 -8.5551 26 1 6.2494 -3.5640 -8.3832 27 6 8.6340 -0.2565 -4.4818 28 6 2.0412 -0.7237 -1.2496 29 1 -0.3634 -1.0276 0.0015 30 1 -0.3634 0.5151 0.8893 31 1 -0.3634 0.5126 -0.8907 32 1 1.6581 -0.2246 2.1389 33 1 1.6967 -1.7573 1.2352 34 1 3.9159 0.3389 1.2541 35 1 3.9334 -1.1897 2.1669 36 1 3.8338 -2.4861 0.0819 37 1 5.1896 -1.3332 -0.0176 38 1 6.1692 0.5485 -3.7376 39 1 8.5843 -0.1169 -1.0336 40 1 9.8290 0.3493 -2.2175 41 1 8.3949 2.3031 -2.8818 42 1 7.2576 1.8645 -1.5846 43 1 8.8695 3.4678 -0.8511 44 1 7.5429 -2.4899 -2.8312 45 1 9.3136 -2.0918 -2.8615 46 1 8.3460 -0.3048 -8.1266 47 1 9.7118 -0.0973 -4.4489 48 1 8.1263 0.4316 -5.1577 49 1 1.7637 -0.1578 -2.1389 50 1 1.6053 -1.7214 -1.3006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485418627.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:52 Heat of formation + Delta-G solvation = -73.059887 kcal Electronic energy + Delta-G solvation = -31478.919383 eV Core-core repulsion = 27314.674577 eV Total energy + Delta-G solvation = -4164.244806 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.25911 -40.94459 -39.17487 -38.76348 -37.72002 -35.49210 -34.64424 -33.78349 -32.79670 -32.12326 -29.08299 -28.27811 -27.13407 -26.64331 -25.51378 -24.41993 -23.24728 -22.80680 -21.68129 -20.64311 -20.41614 -18.88853 -18.62541 -18.31002 -17.94614 -17.06737 -16.96909 -16.57525 -16.36692 -16.18305 -15.85469 -15.72300 -15.36505 -15.17589 -15.06631 -14.82201 -14.60425 -14.37476 -14.35796 -14.05777 -13.61618 -13.35220 -13.12883 -13.08698 -12.88997 -12.80144 -12.74237 -12.66393 -12.41746 -12.20196 -12.02806 -11.96625 -11.81134 -11.69948 -11.64458 -11.32480 -11.15507 -11.01385 -10.82097 -10.31710 -10.00059 -9.80705 -8.95481 -7.93893 -5.26455 0.31458 1.23759 1.43935 1.46658 1.52542 2.08280 2.41659 2.44761 3.10859 3.23552 3.29157 3.39680 3.54822 3.74552 3.83812 3.93571 4.09279 4.14749 4.28125 4.31102 4.34961 4.39565 4.46668 4.58133 4.63216 4.68158 4.73582 4.77843 4.83261 4.85694 4.88104 4.89460 5.05909 5.07173 5.11666 5.14236 5.17123 5.19402 5.27554 5.29719 5.37281 5.42142 5.48379 5.66687 5.87493 5.96303 6.22825 6.68054 6.87700 6.90888 6.93440 7.55716 8.53695 9.22885 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010780 B = 0.003651 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.856940 B = 7666.435035 C = 9325.889336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.064 0.936 4 C -0.113 4.113 5 C -0.128 4.128 6 C 0.055 3.945 7 N -0.575 5.575 8 C 0.503 3.497 9 O -0.552 6.552 10 C 0.513 3.487 11 O -0.517 6.517 12 N -0.655 5.655 13 C 0.141 3.859 14 C -0.100 4.100 15 C 0.089 3.911 16 O -0.587 6.587 17 C 0.122 3.878 18 N -0.633 5.633 19 C -0.231 4.231 20 H 0.078 0.922 21 C -0.057 4.057 22 N -0.946 5.946 23 Si 0.975 3.025 24 H -0.291 1.291 25 H -0.277 1.277 26 H -0.282 1.282 27 C 0.162 3.838 28 C 0.105 3.895 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.136 0.864 38 H 0.412 0.588 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.050 0.950 42 H 0.042 0.958 43 H 0.396 0.604 44 H 0.042 0.958 45 H 0.061 0.939 46 H 0.250 0.750 47 H 0.044 0.956 48 H 0.053 0.947 49 H 0.076 0.924 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.464 4.764 19.579 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.082 0.918 4 C -0.150 4.150 5 C -0.166 4.166 6 C -0.066 4.066 7 N -0.307 5.307 8 C 0.286 3.714 9 O -0.430 6.430 10 C 0.295 3.705 11 O -0.396 6.396 12 N -0.304 5.304 13 C 0.053 3.947 14 C -0.140 4.140 15 C 0.011 3.989 16 O -0.395 6.395 17 C -0.004 4.004 18 N -0.359 5.359 19 C -0.359 4.359 20 H 0.095 0.905 21 C -0.251 4.251 22 N -0.594 5.594 23 Si 0.804 3.196 24 H -0.216 1.216 25 H -0.203 1.203 26 H -0.208 1.208 27 C 0.036 3.964 28 C -0.016 4.016 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.152 0.848 38 H 0.248 0.752 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.246 0.754 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.095 0.905 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.155 3.887 19.381 22.697 hybrid contribution -0.448 0.154 -1.773 1.835 sum -11.603 4.041 17.608 21.471 Atomic orbital electron populations 1.21740 0.92728 1.02795 1.02579 1.21452 0.97151 0.99247 0.94039 0.91797 1.21628 0.94742 1.01304 0.97337 1.21976 0.96417 1.00738 0.97455 1.23257 1.03737 0.97032 0.82560 1.48106 1.07288 1.57614 1.17680 1.20163 0.87936 0.79979 0.83340 1.90743 1.75337 1.42314 1.34619 1.20089 0.87549 0.80513 0.82369 1.90374 1.75368 1.39631 1.34210 1.45263 1.07474 1.46801 1.30910 1.21854 0.79688 0.96525 0.96627 1.21508 1.00113 0.94324 0.98035 1.21934 0.93160 0.91942 0.91849 1.86403 1.60904 1.28572 1.63611 1.22769 0.99099 0.94100 0.84451 1.45764 1.79796 1.09076 1.01302 1.19147 1.39523 0.92543 0.84686 0.90469 1.25509 1.02331 0.97796 0.99454 1.69931 1.55206 1.13215 1.21014 0.85209 0.78025 0.77776 0.78638 1.21643 1.20333 1.20796 1.22400 0.96464 0.87609 0.89966 1.21999 0.77617 1.01959 1.00041 0.91627 0.90980 0.92693 0.90028 0.90903 0.92393 0.88771 0.90786 0.84772 0.75174 0.90489 0.89562 0.93130 0.93972 0.75391 0.93951 0.92165 0.94058 0.93827 0.92846 0.90522 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.20 71.98 0.66 -0.98 16 2 C -0.10 -1.56 2.87 -10.72 -0.03 -1.59 16 3 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 4 C -0.11 -1.46 5.16 30.62 0.16 -1.30 16 5 C -0.13 -2.01 6.10 30.82 0.19 -1.82 16 6 C 0.05 1.19 6.11 86.51 0.53 1.72 16 7 N -0.57 -14.93 2.97 -819.62 -2.43 -17.36 16 8 C 0.50 16.57 7.75 87.27 0.68 17.25 16 9 O -0.55 -21.00 15.92 -3.23 -0.05 -21.05 16 10 C 0.51 17.50 7.33 87.27 0.64 18.14 16 11 O -0.52 -17.54 11.35 -3.23 -0.04 -17.58 16 12 N -0.65 -23.33 4.24 -423.25 -1.79 -25.13 16 13 C 0.14 5.14 0.79 4.16 0.00 5.15 16 14 C -0.10 -3.05 5.15 30.59 0.16 -2.89 16 15 C 0.09 2.34 6.63 71.98 0.48 2.82 16 16 O -0.59 -14.14 13.66 -148.98 -2.03 -16.18 16 17 C 0.12 5.12 7.57 83.18 0.63 5.75 16 18 N -0.63 -32.41 3.78 -737.85 -2.79 -35.20 16 19 C -0.23 -13.12 10.75 84.03 0.90 -12.22 16 20 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 21 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 22 N -0.95 -55.86 11.50 21.65 0.25 -55.61 16 23 Si 0.98 46.20 29.55 68.60 2.03 48.23 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 27 C 0.16 7.29 6.79 83.27 0.57 7.86 16 28 C 0.11 2.25 5.72 86.36 0.49 2.74 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.14 3.51 4.07 -66.14 -0.27 3.24 16 38 H 0.41 15.08 8.30 -92.71 -0.77 14.31 16 39 H 0.08 2.36 7.78 -2.39 -0.02 2.34 16 40 H 0.09 2.58 7.85 -2.39 -0.02 2.57 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.04 1.09 7.70 -2.38 -0.02 1.07 16 43 H 0.40 5.62 9.12 -74.06 -0.68 4.95 16 44 H 0.04 1.85 6.90 -2.39 -0.02 1.83 16 45 H 0.06 2.37 8.11 -2.39 -0.02 2.35 16 46 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 47 H 0.04 1.97 7.91 -2.39 -0.02 1.95 16 48 H 0.05 2.67 7.11 -2.39 -0.02 2.66 16 49 H 0.08 1.92 7.00 -2.39 -0.02 1.90 16 50 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -70.00 395.26 -1.08 -71.09 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: -0.74 Total: 30.95 kcal Atomic # 6 Polarization: 31.31 SS G_CDS: 6.52 Total: 37.83 kcal Atomic # 7 Polarization: -126.54 SS G_CDS: -6.76 Total: -133.30 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -2.12 Total: -54.80 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -70.00 -1.08 -71.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485418627.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.970 kcal (2) G-P(sol) polarization free energy of solvation -70.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds