Wall clock time and date at job start Sat Apr 11 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.07299 * 2 1 4 4 C 1.53990 * 109.91819 * 238.78937 * 2 1 3 5 5 H 1.09004 * 110.31140 * 358.34613 * 4 2 1 6 6 N 1.46498 * 110.39027 * 120.46400 * 4 2 1 7 7 C 1.34782 * 120.00403 * 202.21861 * 6 4 2 8 8 O 1.21287 * 119.99590 * 0.02562 * 7 6 4 9 9 C 1.50692 * 120.00227 * 180.02562 * 7 6 4 10 10 H 1.08998 * 109.52931 * 300.00617 * 9 7 6 11 11 C 1.53187 * 109.52141 * 179.87686 * 9 7 6 12 12 C 1.53175 * 109.03392 * 183.11771 * 11 9 7 13 13 C 1.53090 * 109.16742 * 56.98148 * 12 11 9 14 14 O 1.42906 * 109.41333 * 302.38888 * 13 12 11 15 15 C 1.42908 * 114.15136 * 61.12547 * 14 13 12 16 16 C 1.54597 * 105.14302 * 239.42487 * 4 2 1 17 17 C 1.54930 * 102.92128 * 338.04751 * 16 4 2 18 18 N 1.47908 * 109.91313 * 121.20390 * 2 1 3 19 19 C 1.46896 * 111.00223 * 265.19481 * 18 2 1 20 20 C 1.50695 * 109.47318 * 176.70535 * 19 18 2 21 21 O 1.21295 * 119.99846 * 353.76051 * 20 19 18 22 22 N 1.34780 * 119.99910 * 173.75524 * 20 19 18 23 23 C 1.37105 * 119.99598 * 179.97438 * 22 20 19 24 24 H 1.08001 * 120.00157 * 0.02562 * 23 22 20 25 25 C 1.38945 * 119.99571 * 180.27870 * 23 22 20 26 26 N 1.31411 * 120.00065 * 179.72741 * 25 23 22 27 27 Si 1.86808 * 120.00377 * 359.72598 * 25 23 22 28 28 H 1.48492 * 109.46930 * 89.99592 * 27 25 23 29 29 H 1.48492 * 109.47253 * 210.00311 * 27 25 23 30 30 H 1.48497 * 109.46603 * 330.00154 * 27 25 23 31 31 H 1.09003 * 109.47309 * 300.25352 * 1 2 3 32 32 H 1.08998 * 109.46955 * 60.24760 * 1 2 3 33 33 H 1.08992 * 109.47561 * 180.25021 * 1 2 3 34 34 H 0.97005 * 120.00134 * 22.22505 * 6 4 2 35 35 H 1.08994 * 109.54347 * 302.98037 * 11 9 7 36 36 H 1.08993 * 109.53863 * 63.25226 * 11 9 7 37 37 H 1.09006 * 109.52160 * 176.88711 * 12 11 9 38 38 H 1.09004 * 109.52664 * 297.07393 * 12 11 9 39 39 H 1.08996 * 109.47998 * 62.37484 * 13 12 11 40 40 H 1.09002 * 109.48024 * 182.39690 * 13 12 11 41 41 H 1.09003 * 109.53565 * 178.92147 * 15 14 13 42 42 H 1.09002 * 109.42604 * 58.88898 * 15 14 13 43 43 H 1.09005 * 110.72240 * 219.68305 * 16 4 2 44 44 H 1.09000 * 110.71874 * 96.40151 * 16 4 2 45 45 H 1.09011 * 110.66525 * 278.97421 * 17 16 4 46 46 H 1.08995 * 110.81097 * 155.92092 * 17 16 4 47 47 H 1.08999 * 109.46866 * 56.70214 * 19 18 2 48 48 H 1.09000 * 109.47064 * 296.70360 * 19 18 2 49 49 H 0.96999 * 120.00048 * 0.02562 * 22 20 19 50 50 H 0.97002 * 120.00574 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9041 1.0238 0.0000 4 6 2.0546 -0.7502 -1.2382 5 1 1.2228 -1.1402 -1.8249 6 7 2.8830 0.1363 -2.0592 7 6 3.0721 -0.1362 -3.3655 8 8 2.5559 -1.1153 -3.8615 9 6 3.9247 0.7754 -4.2098 10 1 3.4968 1.7778 -4.2098 11 6 3.9790 0.2419 -5.6447 12 6 4.9102 1.1318 -6.4736 13 6 6.2912 1.1663 -5.8140 14 8 6.1651 1.6425 -4.4725 15 6 5.3435 0.8249 -3.6367 16 6 2.9058 -1.9118 -0.6760 17 6 3.2679 -1.4186 0.7473 18 7 2.0337 -0.7205 1.1895 19 6 2.3210 0.2122 2.2874 20 6 2.7538 -0.5632 3.5049 21 8 2.7086 -1.7753 3.4997 22 7 3.1911 0.0902 4.5997 23 6 3.5843 -0.6153 5.7076 24 1 3.5440 -1.6945 5.7029 25 6 4.0296 0.0585 6.8382 26 7 4.4014 -0.6174 7.9020 27 14 4.0999 1.9252 6.8461 28 1 2.8072 2.4671 7.3363 29 1 5.1965 2.3756 7.7402 30 1 4.3517 2.4168 5.4676 31 1 -0.3634 0.5178 0.8877 32 1 -0.3633 0.5100 -0.8922 33 1 -0.3634 -1.0275 0.0045 34 1 3.2956 0.9195 -1.6625 35 1 4.3597 -0.7794 -5.6398 36 1 2.9788 0.2576 -6.0775 37 1 4.9982 0.7274 -7.4821 38 1 4.5032 2.1420 -6.5196 39 1 6.7150 0.1621 -5.8050 40 1 6.9461 1.8322 -6.3762 41 1 5.3149 1.2445 -2.6311 42 1 5.7554 -0.1836 -3.5983 43 1 3.8052 -2.0559 -1.2749 44 1 2.3212 -2.8306 -0.6288 45 1 4.1097 -0.7269 0.7122 46 1 3.4903 -2.2599 1.4037 47 1 1.4239 0.7853 2.5214 48 1 3.1184 0.8921 1.9873 49 1 3.2269 1.0595 4.6039 50 1 4.7120 -0.1471 8.6915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489255566.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:11 Heat of formation + Delta-G solvation = -112.693268 kcal Electronic energy + Delta-G solvation = -30244.460364 eV Core-core repulsion = 26078.496926 eV Total energy + Delta-G solvation = -4165.963438 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.87190 -39.69236 -38.70295 -37.75922 -34.61494 -34.02370 -33.89812 -32.15137 -31.69209 -31.33469 -30.73143 -26.79244 -25.82374 -25.29262 -24.43776 -23.96296 -21.91417 -20.93627 -20.57508 -19.90875 -19.36890 -18.35310 -17.63430 -16.84559 -16.70280 -16.30553 -15.99024 -15.51114 -15.26594 -15.09126 -14.90678 -14.83693 -14.21571 -14.12311 -13.98454 -13.82157 -13.40793 -13.25870 -13.06811 -12.95843 -12.63132 -12.47928 -12.17967 -12.09380 -11.98713 -11.66566 -11.59941 -11.46218 -11.39024 -11.31221 -11.27328 -10.94302 -10.88104 -10.80178 -10.61723 -10.19777 -9.99274 -9.88258 -9.57513 -9.29164 -8.62163 -8.21203 -8.13087 -6.32491 -3.84008 2.29306 2.78441 2.99911 3.04762 3.13208 3.37102 3.71819 3.90051 4.08408 4.12334 4.27476 4.33584 4.37122 4.45668 4.59603 4.64075 4.77868 4.80644 4.90484 4.96963 5.10579 5.18080 5.19071 5.20211 5.27987 5.31096 5.38142 5.39079 5.48232 5.50461 5.55986 5.64678 5.70209 5.77594 5.81892 5.83130 5.88057 5.91324 6.06666 6.20177 6.29226 6.39950 6.65390 7.02378 7.06798 7.17820 7.56682 7.90465 8.12736 8.58596 8.93857 9.40752 9.81674 10.80618 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015392 B = 0.002366 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.661013 B =11831.934137 C =12820.835068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.055 0.945 4 C 0.137 3.863 5 H 0.100 0.900 6 N -0.722 5.722 7 C 0.521 3.479 8 O -0.533 6.533 9 C -0.144 4.144 10 H 0.106 0.894 11 C -0.102 4.102 12 C -0.157 4.157 13 C 0.056 3.944 14 O -0.376 6.376 15 C 0.072 3.928 16 C -0.130 4.130 17 C 0.039 3.961 18 N -0.485 5.485 19 C 0.035 3.965 20 C 0.453 3.547 21 O -0.557 6.557 22 N -0.592 5.592 23 C -0.304 4.304 24 H 0.120 0.880 25 C 0.041 3.959 26 N -0.881 5.881 27 Si 0.880 3.120 28 H -0.271 1.271 29 H -0.277 1.277 30 H -0.270 1.270 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.398 0.602 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.037 0.963 46 H 0.104 0.896 47 H 0.091 0.909 48 H 0.047 0.953 49 H 0.370 0.630 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.422 8.687 -27.228 28.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.054 4.054 3 H 0.073 0.927 4 C 0.032 3.968 5 H 0.118 0.882 6 N -0.374 5.374 7 C 0.306 3.694 8 O -0.409 6.409 9 C -0.166 4.166 10 H 0.124 0.876 11 C -0.140 4.140 12 C -0.194 4.194 13 C -0.021 4.021 14 O -0.294 6.294 15 C -0.006 4.006 16 C -0.169 4.169 17 C -0.088 4.088 18 N -0.209 5.209 19 C -0.097 4.097 20 C 0.238 3.762 21 O -0.438 6.438 22 N -0.232 5.232 23 C -0.432 4.432 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.521 5.521 27 Si 0.706 3.294 28 H -0.196 1.196 29 H -0.202 1.202 30 H -0.196 1.196 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.233 0.767 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.056 0.944 46 H 0.122 0.878 47 H 0.109 0.891 48 H 0.065 0.935 49 H 0.202 0.798 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.049 6.937 -27.084 27.978 hybrid contribution 0.764 2.399 0.179 2.524 sum -0.285 9.336 -26.905 28.480 Atomic orbital electron populations 1.21712 0.93033 1.03011 1.01328 1.22661 0.97166 0.95989 0.89548 0.92692 1.21925 0.93723 0.90151 0.90994 0.88199 1.46267 1.52232 1.29307 1.09636 1.20409 0.81089 0.85845 0.82014 1.90720 1.49372 1.28449 1.72370 1.22042 0.97058 1.00725 0.96777 0.87602 1.21406 1.00913 0.99527 0.92159 1.22234 0.96255 1.01102 0.99831 1.22664 0.96503 1.00013 0.82899 1.87974 1.68735 1.51112 1.21624 1.22510 0.87746 0.96124 0.94191 1.22901 0.99948 0.98294 0.95720 1.23324 0.90340 0.99693 0.95458 1.64497 1.27747 1.24621 1.04052 1.22107 1.00760 0.94279 0.92533 1.19570 0.83879 0.88558 0.84175 1.90557 1.57235 1.13533 1.82518 1.42213 1.59487 1.07647 1.13807 1.19419 1.39883 0.94825 0.89119 0.86269 1.25039 0.97427 0.98401 0.95329 1.69619 1.43146 1.35736 1.03625 0.86675 0.78906 0.85496 0.78308 1.19613 1.20196 1.19596 0.92100 0.92639 0.91372 0.76705 0.90802 0.90602 0.90320 0.90872 0.92879 0.88574 0.88351 0.92323 0.90979 0.89693 0.94432 0.87784 0.89053 0.93466 0.79791 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 9.32 37.16 0.35 -1.05 16 2 C 0.06 0.63 2.87 -66.64 -0.19 0.43 16 3 H 0.06 0.54 7.23 -51.93 -0.38 0.16 16 4 C 0.14 1.49 2.93 -66.58 -0.20 1.30 16 5 H 0.10 1.19 7.19 -51.93 -0.37 0.82 16 6 N -0.72 -6.40 4.99 -52.49 -0.26 -6.67 16 7 C 0.52 5.18 7.15 -10.99 -0.08 5.10 16 8 O -0.53 -7.29 15.66 5.55 0.09 -7.21 16 9 C -0.14 -1.08 2.73 -91.63 -0.25 -1.33 16 10 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 11 C -0.10 -0.76 4.62 -26.54 -0.12 -0.89 16 12 C -0.16 -0.89 6.14 -26.59 -0.16 -1.05 16 13 C 0.06 0.35 6.84 37.20 0.25 0.60 16 14 O -0.38 -3.18 10.76 -35.23 -0.38 -3.56 16 15 C 0.07 0.53 6.01 37.21 0.22 0.75 16 16 C -0.13 -1.62 6.78 -24.87 -0.17 -1.78 16 17 C 0.04 0.58 5.78 -1.90 -0.01 0.57 16 18 N -0.48 -7.31 4.62 -224.01 -1.03 -8.34 16 19 C 0.04 0.56 5.18 -4.98 -0.03 0.53 16 20 C 0.45 10.02 7.47 -10.99 -0.08 9.94 16 21 O -0.56 -14.60 14.39 5.54 0.08 -14.52 16 22 N -0.59 -13.82 5.09 -10.96 -0.06 -13.88 16 23 C -0.30 -8.48 10.16 -14.93 -0.15 -8.64 16 24 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 25 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 26 N -0.88 -25.58 13.96 55.50 0.77 -24.80 16 27 Si 0.88 19.12 27.73 -169.99 -4.71 14.40 16 28 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 29 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 30 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.40 2.70 7.77 -40.82 -0.32 2.38 16 35 H 0.07 0.63 8.03 -51.93 -0.42 0.21 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.61 7.65 -51.93 -0.40 0.21 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 44 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.04 0.53 7.91 -51.92 -0.41 0.12 16 46 H 0.10 1.91 6.84 -51.93 -0.36 1.55 16 47 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.05 0.65 7.99 -51.93 -0.41 0.24 16 49 H 0.37 7.56 5.77 -40.82 -0.24 7.32 16 50 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -34.07 395.24 -8.60 -42.68 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -8.34 Total: 10.42 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -0.71 Total: 5.52 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.58 Total: -53.69 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.21 Total: -25.28 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.07 -8.60 -42.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489255566.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.016 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds