Wall clock time and date at job start Sat Apr 11 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.07299 * 2 1 4 4 C 1.53990 * 109.91819 * 238.78937 * 2 1 3 5 5 H 1.09004 * 110.31140 * 358.34613 * 4 2 1 6 6 N 1.46498 * 110.39027 * 120.46400 * 4 2 1 7 7 C 1.34782 * 120.00403 * 202.21861 * 6 4 2 8 8 O 1.21287 * 119.99590 * 0.02562 * 7 6 4 9 9 C 1.50692 * 120.00227 * 180.02562 * 7 6 4 10 10 H 1.08998 * 109.52931 * 300.00617 * 9 7 6 11 11 C 1.53187 * 109.52141 * 179.87686 * 9 7 6 12 12 C 1.53175 * 109.03392 * 183.11771 * 11 9 7 13 13 C 1.53090 * 109.16742 * 56.98148 * 12 11 9 14 14 O 1.42906 * 109.41333 * 302.38888 * 13 12 11 15 15 C 1.42908 * 114.15136 * 61.12547 * 14 13 12 16 16 C 1.54597 * 105.14302 * 239.42487 * 4 2 1 17 17 C 1.54930 * 102.92128 * 338.04751 * 16 4 2 18 18 N 1.47908 * 109.91313 * 121.20390 * 2 1 3 19 19 C 1.46896 * 111.00223 * 265.19481 * 18 2 1 20 20 C 1.50695 * 109.47318 * 176.70535 * 19 18 2 21 21 O 1.21295 * 119.99846 * 353.76051 * 20 19 18 22 22 N 1.34780 * 119.99910 * 173.75524 * 20 19 18 23 23 C 1.37105 * 119.99598 * 179.97438 * 22 20 19 24 24 H 1.08001 * 120.00157 * 0.02562 * 23 22 20 25 25 C 1.38945 * 119.99571 * 180.27870 * 23 22 20 26 26 N 1.31411 * 120.00065 * 179.72741 * 25 23 22 27 27 Si 1.86808 * 120.00377 * 359.72598 * 25 23 22 28 28 H 1.48492 * 109.46930 * 89.99592 * 27 25 23 29 29 H 1.48492 * 109.47253 * 210.00311 * 27 25 23 30 30 H 1.48497 * 109.46603 * 330.00154 * 27 25 23 31 31 H 1.09003 * 109.47309 * 300.25352 * 1 2 3 32 32 H 1.08998 * 109.46955 * 60.24760 * 1 2 3 33 33 H 1.08992 * 109.47561 * 180.25021 * 1 2 3 34 34 H 0.97005 * 120.00134 * 22.22505 * 6 4 2 35 35 H 1.08994 * 109.54347 * 302.98037 * 11 9 7 36 36 H 1.08993 * 109.53863 * 63.25226 * 11 9 7 37 37 H 1.09006 * 109.52160 * 176.88711 * 12 11 9 38 38 H 1.09004 * 109.52664 * 297.07393 * 12 11 9 39 39 H 1.08996 * 109.47998 * 62.37484 * 13 12 11 40 40 H 1.09002 * 109.48024 * 182.39690 * 13 12 11 41 41 H 1.09003 * 109.53565 * 178.92147 * 15 14 13 42 42 H 1.09002 * 109.42604 * 58.88898 * 15 14 13 43 43 H 1.09005 * 110.72240 * 219.68305 * 16 4 2 44 44 H 1.09000 * 110.71874 * 96.40151 * 16 4 2 45 45 H 1.09011 * 110.66525 * 278.97421 * 17 16 4 46 46 H 1.08995 * 110.81097 * 155.92092 * 17 16 4 47 47 H 1.08999 * 109.46866 * 56.70214 * 19 18 2 48 48 H 1.09000 * 109.47064 * 296.70360 * 19 18 2 49 49 H 0.96999 * 120.00048 * 0.02562 * 22 20 19 50 50 H 0.97002 * 120.00574 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9041 1.0238 0.0000 4 6 2.0546 -0.7502 -1.2382 5 1 1.2228 -1.1402 -1.8249 6 7 2.8830 0.1363 -2.0592 7 6 3.0721 -0.1362 -3.3655 8 8 2.5559 -1.1153 -3.8615 9 6 3.9247 0.7754 -4.2098 10 1 3.4968 1.7778 -4.2098 11 6 3.9790 0.2419 -5.6447 12 6 4.9102 1.1318 -6.4736 13 6 6.2912 1.1663 -5.8140 14 8 6.1651 1.6425 -4.4725 15 6 5.3435 0.8249 -3.6367 16 6 2.9058 -1.9118 -0.6760 17 6 3.2679 -1.4186 0.7473 18 7 2.0337 -0.7205 1.1895 19 6 2.3210 0.2122 2.2874 20 6 2.7538 -0.5632 3.5049 21 8 2.7086 -1.7753 3.4997 22 7 3.1911 0.0902 4.5997 23 6 3.5843 -0.6153 5.7076 24 1 3.5440 -1.6945 5.7029 25 6 4.0296 0.0585 6.8382 26 7 4.4014 -0.6174 7.9020 27 14 4.0999 1.9252 6.8461 28 1 2.8072 2.4671 7.3363 29 1 5.1965 2.3756 7.7402 30 1 4.3517 2.4168 5.4676 31 1 -0.3634 0.5178 0.8877 32 1 -0.3633 0.5100 -0.8922 33 1 -0.3634 -1.0275 0.0045 34 1 3.2956 0.9195 -1.6625 35 1 4.3597 -0.7794 -5.6398 36 1 2.9788 0.2576 -6.0775 37 1 4.9982 0.7274 -7.4821 38 1 4.5032 2.1420 -6.5196 39 1 6.7150 0.1621 -5.8050 40 1 6.9461 1.8322 -6.3762 41 1 5.3149 1.2445 -2.6311 42 1 5.7554 -0.1836 -3.5983 43 1 3.8052 -2.0559 -1.2749 44 1 2.3212 -2.8306 -0.6288 45 1 4.1097 -0.7269 0.7122 46 1 3.4903 -2.2599 1.4037 47 1 1.4239 0.7853 2.5214 48 1 3.1184 0.8921 1.9873 49 1 3.2269 1.0595 4.6039 50 1 4.7120 -0.1471 8.6915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489255566.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:10 Heat of formation + Delta-G solvation = -140.322897 kcal Electronic energy + Delta-G solvation = -30245.658474 eV Core-core repulsion = 26078.496926 eV Total energy + Delta-G solvation = -4167.161549 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.68246 -40.74630 -39.81966 -39.02706 -36.05909 -35.39288 -34.62445 -33.75399 -32.86759 -32.30515 -31.66328 -28.26949 -26.71906 -25.90177 -25.65496 -25.10762 -22.84200 -21.74246 -21.50039 -21.21241 -20.66658 -20.17547 -18.40757 -17.82181 -17.52509 -17.31855 -16.98109 -16.65103 -16.44251 -16.30297 -16.02945 -15.82862 -15.33480 -15.16031 -14.95788 -14.85229 -14.62644 -14.44689 -14.19481 -14.06021 -13.80264 -13.62661 -13.48225 -13.00686 -12.97167 -12.75407 -12.62115 -12.43599 -12.38477 -12.36876 -12.16535 -12.15069 -11.96459 -11.92387 -11.74090 -11.47380 -11.39837 -10.94288 -10.50916 -10.38606 -10.23109 -10.13741 -9.34938 -8.39903 -6.00807 1.30418 1.36805 1.45416 1.51997 1.97713 2.01667 2.24172 2.65021 2.86216 3.15786 3.19205 3.43821 3.54399 3.67273 3.76277 3.77577 3.96899 4.00957 4.12989 4.16580 4.19681 4.23688 4.30020 4.36293 4.42807 4.44980 4.51124 4.60255 4.69556 4.73062 4.79696 4.81290 4.88926 4.92524 5.00668 5.03622 5.05081 5.10647 5.12743 5.30266 5.37872 5.44064 5.54364 5.86569 5.94859 6.07029 6.13915 6.46120 6.61417 6.90354 7.16692 7.41645 7.99702 8.77837 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015392 B = 0.002366 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.661013 B =11831.934137 C =12820.835068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.062 3.938 3 H 0.086 0.914 4 C 0.147 3.853 5 H 0.092 0.908 6 N -0.709 5.709 7 C 0.522 3.478 8 O -0.574 6.574 9 C -0.135 4.135 10 H 0.126 0.874 11 C -0.104 4.104 12 C -0.149 4.149 13 C 0.049 3.951 14 O -0.390 6.390 15 C 0.072 3.928 16 C -0.123 4.123 17 C 0.043 3.957 18 N -0.510 5.510 19 C 0.047 3.953 20 C 0.451 3.549 21 O -0.607 6.607 22 N -0.592 5.592 23 C -0.326 4.326 24 H 0.053 0.947 25 C -0.018 4.018 26 N -0.936 5.936 27 Si 0.966 3.034 28 H -0.257 1.257 29 H -0.277 1.277 30 H -0.229 1.229 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.413 0.587 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.122 0.878 48 H 0.085 0.915 49 H 0.389 0.611 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.579 13.409 -29.437 32.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.046 4.046 3 H 0.104 0.896 4 C 0.042 3.958 5 H 0.110 0.890 6 N -0.362 5.362 7 C 0.310 3.690 8 O -0.453 6.453 9 C -0.156 4.156 10 H 0.143 0.857 11 C -0.142 4.142 12 C -0.186 4.186 13 C -0.027 4.027 14 O -0.309 6.309 15 C -0.005 4.005 16 C -0.162 4.162 17 C -0.085 4.085 18 N -0.236 5.236 19 C -0.084 4.084 20 C 0.239 3.761 21 O -0.491 6.491 22 N -0.234 5.234 23 C -0.455 4.455 24 H 0.071 0.929 25 C -0.216 4.216 26 N -0.577 5.577 27 Si 0.786 3.214 28 H -0.182 1.182 29 H -0.202 1.202 30 H -0.152 1.152 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.251 0.749 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.139 0.861 48 H 0.102 0.898 49 H 0.225 0.775 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.205 11.691 -29.320 31.588 hybrid contribution 0.798 0.734 0.828 1.365 sum -0.407 12.425 -28.492 31.086 Atomic orbital electron populations 1.21724 0.92369 1.02340 1.02533 1.22693 0.97521 0.96908 0.87474 0.89608 1.21681 0.93278 0.89820 0.91068 0.89034 1.46111 1.51638 1.29289 1.09154 1.20834 0.80568 0.85439 0.82202 1.90712 1.51096 1.30303 1.73187 1.22010 0.96720 1.00831 0.96043 0.85666 1.21404 1.00942 0.99150 0.92693 1.22192 0.95405 1.01016 1.00033 1.22836 0.97119 1.00417 0.82309 1.87956 1.68886 1.51516 1.22545 1.22549 0.87326 0.95791 0.94854 1.22797 1.00232 0.98581 0.94576 1.23136 0.91111 0.98635 0.95585 1.64403 1.27821 1.25761 1.05580 1.22044 1.03092 0.93731 0.89568 1.20876 0.81458 0.88458 0.85334 1.90551 1.58490 1.16411 1.83614 1.42027 1.60093 1.08381 1.12948 1.18971 1.42075 0.92599 0.91835 0.92869 1.26141 0.95914 1.05631 0.93912 1.69812 1.44224 1.38946 1.04735 0.85352 0.79292 0.76230 0.80552 1.18187 1.20217 1.15183 0.91844 0.90431 0.93084 0.74938 0.92443 0.91244 0.89066 0.90213 0.92987 0.87035 0.86849 0.93271 0.90618 0.91131 0.93105 0.92434 0.86058 0.89766 0.77501 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.32 71.98 0.67 -1.70 16 2 C 0.06 1.19 2.87 45.05 0.13 1.32 16 3 H 0.09 1.18 7.23 -2.39 -0.02 1.16 16 4 C 0.15 2.92 2.93 45.87 0.13 3.05 16 5 H 0.09 2.06 7.19 -2.39 -0.02 2.04 16 6 N -0.71 -10.49 4.99 -438.37 -2.19 -12.68 16 7 C 0.52 9.38 7.15 87.65 0.63 10.01 16 8 O -0.57 -15.31 15.66 -3.05 -0.05 -15.36 16 9 C -0.13 -1.69 2.73 -11.45 -0.03 -1.72 16 10 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 11 C -0.10 -1.41 4.62 30.72 0.14 -1.26 16 12 C -0.15 -1.37 6.14 30.68 0.19 -1.18 16 13 C 0.05 0.51 6.84 72.01 0.49 1.01 16 14 O -0.39 -5.65 10.76 -148.98 -1.60 -7.25 16 15 C 0.07 0.89 6.01 72.01 0.43 1.33 16 16 C -0.12 -3.03 6.78 31.80 0.22 -2.81 16 17 C 0.04 1.27 5.78 86.65 0.50 1.77 16 18 N -0.51 -14.49 4.62 -862.64 -3.99 -18.47 16 19 C 0.05 1.35 5.18 85.56 0.44 1.79 16 20 C 0.45 19.87 7.47 87.66 0.65 20.53 16 21 O -0.61 -33.35 14.39 -3.08 -0.04 -33.40 16 22 N -0.59 -27.30 5.09 -306.98 -1.56 -28.86 16 23 C -0.33 -18.92 10.16 84.04 0.85 -18.06 16 24 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 25 C -0.02 -0.97 5.50 84.93 0.47 -0.51 16 26 N -0.94 -56.40 13.96 21.66 0.30 -56.10 16 27 Si 0.97 38.06 27.73 68.60 1.90 39.97 16 28 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 29 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 30 H -0.23 -7.41 6.52 99.48 0.65 -6.76 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.41 3.79 7.77 -92.70 -0.72 3.07 16 35 H 0.06 0.96 8.03 -2.39 -0.02 0.94 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 40 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.11 1.02 7.65 -2.39 -0.02 1.00 16 42 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.08 1.80 8.05 -2.38 -0.02 1.78 16 44 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.05 1.34 7.91 -2.38 -0.02 1.32 16 46 H 0.06 2.24 6.84 -2.39 -0.02 2.23 16 47 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 48 H 0.08 1.86 7.99 -2.39 -0.02 1.85 16 49 H 0.39 14.64 5.77 -92.71 -0.53 14.10 16 50 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -81.79 395.24 -1.67 -83.45 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: -0.36 Total: 35.15 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 5.92 Total: 13.55 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -7.43 Total: -116.11 kcal Atomic # 8 Polarization: -54.31 SS G_CDS: -1.70 Total: -56.01 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 1.90 Total: 39.97 kcal Total: -81.79 -1.67 -83.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489255566.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.871 kcal (2) G-P(sol) polarization free energy of solvation -81.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds