Wall clock time and date at job start Sat Apr 11 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.43916 * 2 1 4 4 C 1.54102 * 110.59886 * 122.62211 * 2 1 3 5 5 O 1.43887 * 107.37654 * 116.83636 * 4 2 1 6 6 C 1.44377 * 106.90030 * 26.27220 * 5 4 2 7 7 H 1.08999 * 110.62141 * 78.73866 * 6 5 4 8 8 C 1.50700 * 110.62150 * 201.58262 * 6 5 4 9 9 O 1.21281 * 119.99659 * 1.41756 * 8 6 5 10 10 N 1.34775 * 120.00555 * 181.41710 * 8 6 5 11 11 C 1.46498 * 120.00203 * 180.02562 * 10 8 6 12 12 C 1.52997 * 109.47088 * 180.02562 * 11 10 8 13 13 N 1.46901 * 109.47445 * 179.97438 * 12 11 10 14 14 C 1.46894 * 111.00517 * 189.99770 * 13 12 11 15 15 C 1.50695 * 109.47413 * 162.31601 * 14 13 12 16 16 O 1.21293 * 120.00137 * 1.33086 * 15 14 13 17 17 N 1.34774 * 120.00256 * 181.33510 * 15 14 13 18 18 C 1.37099 * 120.00179 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00104 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00331 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99778 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00412 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46894 * 59.99923 * 22 20 18 24 24 H 1.48495 * 109.47257 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46839 * 300.00330 * 22 20 18 26 26 C 1.46903 * 110.99854 * 66.04620 * 13 12 11 27 27 C 1.52992 * 117.50196 * 127.74151 * 26 13 12 28 28 C 1.52996 * 117.49801 * 59.07683 * 26 13 12 29 29 C 1.54820 * 110.48848 * 237.45336 * 2 1 3 30 30 H 1.09007 * 109.46893 * 182.54396 * 1 2 3 31 31 H 1.08992 * 109.47420 * 302.54415 * 1 2 3 32 32 H 1.09001 * 109.47187 * 62.54725 * 1 2 3 33 33 H 1.09004 * 109.87934 * 236.12531 * 4 2 1 34 34 H 1.08998 * 109.88086 * 357.13155 * 4 2 1 35 35 H 0.96996 * 119.99721 * 0.02562 * 10 8 6 36 36 H 1.08995 * 109.47323 * 60.00149 * 11 10 8 37 37 H 1.09007 * 109.47108 * 299.99476 * 11 10 8 38 38 H 1.09008 * 109.47348 * 59.99689 * 12 11 10 39 39 H 1.09003 * 109.47463 * 299.99844 * 12 11 10 40 40 H 1.09004 * 109.47389 * 282.32138 * 14 13 12 41 41 H 1.09006 * 109.47168 * 42.31745 * 14 13 12 42 42 H 0.96995 * 120.00024 * 359.97438 * 17 15 14 43 43 H 0.96999 * 120.00252 * 179.97438 * 21 20 18 44 44 H 1.09003 * 115.54840 * 273.41409 * 26 13 12 45 45 H 1.09000 * 117.50034 * 359.97438 * 27 26 13 46 46 H 1.08994 * 117.50281 * 145.02195 * 27 26 13 47 47 H 1.09007 * 117.50021 * 214.97854 * 28 26 13 48 48 H 1.08998 * 117.50027 * 359.97438 * 28 26 13 49 49 H 1.08994 * 110.90392 * 102.11153 * 29 2 1 50 50 H 1.08999 * 110.93513 * 338.52429 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0721 -0.7776 1.2149 5 8 2.8036 -1.9089 0.7095 6 6 3.2681 -1.5527 -0.6103 7 1 4.1474 -0.9116 -0.5478 8 6 3.5708 -2.7885 -1.4179 9 8 3.3865 -3.8869 -0.9378 10 7 4.0463 -2.6732 -2.6737 11 6 4.3400 -3.8746 -3.4590 12 6 4.8635 -3.4674 -4.8377 13 7 5.1586 -4.6720 -5.6249 14 6 5.8812 -4.3315 -6.8577 15 6 6.5395 -5.5684 -7.4122 16 8 6.3987 -6.6341 -6.8502 17 7 7.2848 -5.4907 -8.5324 18 6 7.8841 -6.6160 -9.0365 19 1 7.7587 -7.5648 -8.5362 20 6 8.6521 -6.5359 -10.1917 21 7 8.8043 -5.3815 -10.8008 22 14 9.4681 -8.0692 -10.8790 23 1 8.4289 -9.0777 -11.2082 24 1 10.2252 -7.7187 -12.1074 25 1 10.3993 -8.6301 -9.8673 26 6 3.9298 -5.4193 -5.9244 27 6 3.6631 -5.7837 -7.3862 28 6 2.8334 -4.6921 -6.7055 29 6 2.0719 -0.7802 -1.2225 30 1 -0.3633 -1.0267 0.0456 31 1 -0.3634 0.5528 0.8662 32 1 -0.3633 0.4738 -0.9119 33 1 2.7374 -0.1395 1.7967 34 1 1.2443 -1.1157 1.8382 35 1 4.1940 -1.7948 -3.0576 36 1 3.4306 -4.4643 -3.5749 37 1 5.0955 -4.4690 -2.9450 38 1 5.7730 -2.8779 -4.7215 39 1 4.1084 -2.8728 -5.3520 40 1 5.1804 -3.9329 -7.5914 41 1 6.6420 -3.5825 -6.6378 42 1 7.3972 -4.6386 -8.9820 43 1 9.3407 -5.3254 -11.6071 44 1 3.6160 -6.1328 -5.1625 45 1 4.3991 -5.4687 -8.1258 46 1 3.1735 -6.7368 -7.5860 47 1 1.7983 -4.9277 -6.4578 48 1 3.0237 -3.6592 -6.9968 49 1 2.4081 -0.0968 -2.0021 50 1 1.3208 -1.4691 -1.6090 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567446229.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:46 Heat of formation + Delta-G solvation = -75.840966 kcal Electronic energy + Delta-G solvation = -29439.795813 eV Core-core repulsion = 25275.430411 eV Total energy + Delta-G solvation = -4164.365402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.65502 -39.61865 -38.77881 -37.29741 -35.32026 -33.99937 -33.86340 -33.22375 -31.27234 -31.02687 -29.14968 -26.84645 -26.41776 -24.45728 -24.09402 -22.96318 -21.89535 -21.05017 -20.63253 -20.00743 -18.82082 -17.79453 -17.74174 -17.20892 -16.89790 -16.27267 -15.92386 -15.61383 -15.41171 -15.19444 -14.66327 -14.55596 -14.39071 -14.00370 -13.86844 -13.58571 -13.42119 -13.39502 -13.16020 -13.00727 -12.61595 -12.35054 -12.15487 -11.94128 -11.70522 -11.54879 -11.49072 -11.46671 -11.28199 -11.21310 -10.99552 -10.96796 -10.44735 -10.42815 -10.23729 -10.19200 -9.92567 -9.81396 -9.44393 -9.23346 -8.48406 -7.94228 -7.89647 -6.39426 -3.79901 2.37394 2.57684 3.21628 3.27039 3.31560 3.56523 3.83496 3.91965 3.99744 4.06996 4.18622 4.24860 4.34296 4.53671 4.58600 4.71237 4.76320 4.91862 4.96542 5.07424 5.10447 5.13297 5.15362 5.16386 5.19009 5.24354 5.27839 5.37271 5.40228 5.44209 5.50960 5.65463 5.71592 5.75150 5.80789 5.87296 5.96830 6.12565 6.22857 6.26720 6.30398 6.35889 6.47061 7.10667 7.23835 7.26224 7.57338 8.01057 8.08307 8.64887 9.21255 9.56929 10.09776 10.78425 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027692 B = 0.001804 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.894458 B =15520.305811 C =15683.482033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 H 0.087 0.913 4 C 0.046 3.954 5 O -0.346 6.346 6 C 0.059 3.941 7 H 0.096 0.904 8 C 0.517 3.483 9 O -0.516 6.516 10 N -0.726 5.726 11 C 0.126 3.874 12 C 0.047 3.953 13 N -0.480 5.480 14 C 0.039 3.961 15 C 0.447 3.553 16 O -0.566 6.566 17 N -0.569 5.569 18 C -0.296 4.296 19 H 0.102 0.898 20 C 0.021 3.979 21 N -0.904 5.904 22 Si 0.929 3.071 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.042 3.958 27 C -0.166 4.166 28 C -0.228 4.228 29 C -0.140 4.140 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.399 0.601 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.041 0.959 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.390 0.610 43 H 0.271 0.729 44 H 0.122 0.878 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.849 17.233 15.977 27.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 H 0.106 0.894 4 C -0.031 4.031 5 O -0.264 6.264 6 C -0.002 4.002 7 H 0.114 0.886 8 C 0.302 3.698 9 O -0.389 6.389 10 N -0.380 5.380 11 C 0.002 3.998 12 C -0.081 4.081 13 N -0.202 5.202 14 C -0.092 4.092 15 C 0.232 3.768 16 O -0.449 6.449 17 N -0.207 5.207 18 C -0.426 4.426 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.546 5.546 22 Si 0.757 3.243 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.067 4.067 27 C -0.203 4.203 28 C -0.267 4.267 29 C -0.178 4.178 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.232 0.768 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.223 0.777 43 H 0.081 0.919 44 H 0.140 0.860 45 H 0.122 0.878 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.105 0.895 49 H 0.108 0.892 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.608 15.209 16.956 27.059 hybrid contribution 0.119 1.069 -1.570 1.903 sum -14.489 16.278 15.386 26.676 Atomic orbital electron populations 1.21834 0.93572 1.02563 1.02244 1.22541 0.97462 1.00079 0.94388 0.89447 1.23386 0.95926 0.87879 0.95890 1.89069 1.71810 1.37082 1.28469 1.22972 0.98430 0.93960 0.84836 0.88619 1.20103 0.77562 0.90441 0.81724 1.90762 1.50552 1.27685 1.69943 1.45805 1.67309 1.10340 1.14499 1.21279 1.01578 0.86428 0.90489 1.22247 1.00377 0.92236 0.93239 1.61447 1.19730 1.19967 1.19090 1.22011 0.97778 0.98122 0.91321 1.19592 0.84139 0.89764 0.83300 1.90547 1.64256 1.29660 1.60410 1.41845 1.44394 1.11390 1.23023 1.19630 1.26043 0.89587 1.07301 0.88002 1.25230 0.97869 0.98173 0.96703 1.69601 1.40757 1.24223 1.20009 0.85936 0.79218 0.81110 0.78065 1.19970 1.21052 1.19937 1.22620 0.88747 0.99715 0.95597 1.23253 1.02062 0.99138 0.95825 1.23480 0.97547 0.97662 1.08033 1.23220 0.97211 0.99167 0.98249 0.92016 0.92141 0.92084 0.91982 0.89273 0.76777 0.90987 0.90150 0.90156 0.94092 0.92774 0.89443 0.77667 0.91923 0.86041 0.87838 0.88599 0.88920 0.89483 0.89241 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 8.93 37.16 0.33 -0.32 16 2 C -0.13 -0.63 3.64 -89.09 -0.32 -0.95 16 3 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 4 C 0.05 0.32 7.37 37.73 0.28 0.59 16 5 O -0.35 -3.86 10.81 -54.30 -0.59 -4.45 16 6 C 0.06 0.50 3.76 -26.83 -0.10 0.40 16 7 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 8 C 0.52 6.04 7.20 -10.99 -0.08 5.96 16 9 O -0.52 -8.72 16.57 -13.51 -0.22 -8.94 16 10 N -0.73 -6.64 5.56 -60.30 -0.33 -6.97 16 11 C 0.13 1.47 5.67 -4.04 -0.02 1.45 16 12 C 0.05 0.54 4.96 -3.83 -0.02 0.52 16 13 N -0.48 -7.55 4.34 -228.09 -0.99 -8.54 16 14 C 0.04 0.66 5.00 -4.98 -0.02 0.64 16 15 C 0.45 10.24 5.84 -10.99 -0.06 10.17 16 16 O -0.57 -15.04 14.79 5.55 0.08 -14.95 16 17 N -0.57 -14.09 5.29 -10.97 -0.06 -14.15 16 18 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 19 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 22 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 C 0.04 0.65 4.55 -67.72 -0.31 0.34 16 27 C -0.17 -2.70 8.48 -26.70 -0.23 -2.93 16 28 C -0.23 -2.93 9.27 -26.69 -0.25 -3.17 16 29 C -0.14 -0.81 6.13 -24.72 -0.15 -0.96 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.56 7.70 -51.93 -0.40 0.16 16 35 H 0.40 2.25 8.47 -40.82 -0.35 1.90 16 36 H 0.07 0.93 7.30 -51.93 -0.38 0.55 16 37 H 0.08 1.13 8.14 -51.92 -0.42 0.70 16 38 H 0.08 0.81 7.84 -51.92 -0.41 0.41 16 39 H 0.04 0.40 6.87 -51.93 -0.36 0.05 16 40 H 0.05 0.84 5.99 -51.93 -0.31 0.53 16 41 H 0.09 1.32 7.77 -51.93 -0.40 0.92 16 42 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.12 1.90 8.03 -51.93 -0.42 1.48 16 45 H 0.10 1.92 4.91 -51.93 -0.26 1.67 16 46 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 47 H 0.09 1.06 8.14 -51.92 -0.42 0.63 16 48 H 0.09 1.04 7.15 -51.93 -0.37 0.67 16 49 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.09 0.60 7.78 -51.93 -0.40 0.20 16 LS Contribution 401.86 15.07 6.06 6.06 Total: -1.00 -35.00 401.86 -9.67 -44.67 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -8.11 Total: 10.98 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -1.20 Total: 3.91 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.66 Total: -53.32 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.73 Total: -28.34 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.00 -9.67 -44.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567446229.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.171 kcal (2) G-P(sol) polarization free energy of solvation -35.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds