Wall clock time and date at job start Sat Apr 11 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.43916 * 2 1 4 4 C 1.54102 * 110.59886 * 122.62211 * 2 1 3 5 5 O 1.43887 * 107.37654 * 116.83636 * 4 2 1 6 6 C 1.44377 * 106.90030 * 26.27220 * 5 4 2 7 7 H 1.08999 * 110.62141 * 78.73866 * 6 5 4 8 8 C 1.50700 * 110.62150 * 201.58262 * 6 5 4 9 9 O 1.21281 * 119.99659 * 1.41756 * 8 6 5 10 10 N 1.34775 * 120.00555 * 181.41710 * 8 6 5 11 11 C 1.46498 * 120.00203 * 180.02562 * 10 8 6 12 12 C 1.52997 * 109.47088 * 180.02562 * 11 10 8 13 13 N 1.46901 * 109.47445 * 179.97438 * 12 11 10 14 14 C 1.46894 * 111.00517 * 189.99770 * 13 12 11 15 15 C 1.50695 * 109.47413 * 162.31601 * 14 13 12 16 16 O 1.21293 * 120.00137 * 1.33086 * 15 14 13 17 17 N 1.34774 * 120.00256 * 181.33510 * 15 14 13 18 18 C 1.37099 * 120.00179 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00104 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00331 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99778 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00412 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46894 * 59.99923 * 22 20 18 24 24 H 1.48495 * 109.47257 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46839 * 300.00330 * 22 20 18 26 26 C 1.46903 * 110.99854 * 66.04620 * 13 12 11 27 27 C 1.52992 * 117.50196 * 127.74151 * 26 13 12 28 28 C 1.52996 * 117.49801 * 59.07683 * 26 13 12 29 29 C 1.54820 * 110.48848 * 237.45336 * 2 1 3 30 30 H 1.09007 * 109.46893 * 182.54396 * 1 2 3 31 31 H 1.08992 * 109.47420 * 302.54415 * 1 2 3 32 32 H 1.09001 * 109.47187 * 62.54725 * 1 2 3 33 33 H 1.09004 * 109.87934 * 236.12531 * 4 2 1 34 34 H 1.08998 * 109.88086 * 357.13155 * 4 2 1 35 35 H 0.96996 * 119.99721 * 0.02562 * 10 8 6 36 36 H 1.08995 * 109.47323 * 60.00149 * 11 10 8 37 37 H 1.09007 * 109.47108 * 299.99476 * 11 10 8 38 38 H 1.09008 * 109.47348 * 59.99689 * 12 11 10 39 39 H 1.09003 * 109.47463 * 299.99844 * 12 11 10 40 40 H 1.09004 * 109.47389 * 282.32138 * 14 13 12 41 41 H 1.09006 * 109.47168 * 42.31745 * 14 13 12 42 42 H 0.96995 * 120.00024 * 359.97438 * 17 15 14 43 43 H 0.96999 * 120.00252 * 179.97438 * 21 20 18 44 44 H 1.09003 * 115.54840 * 273.41409 * 26 13 12 45 45 H 1.09000 * 117.50034 * 359.97438 * 27 26 13 46 46 H 1.08994 * 117.50281 * 145.02195 * 27 26 13 47 47 H 1.09007 * 117.50021 * 214.97854 * 28 26 13 48 48 H 1.08998 * 117.50027 * 359.97438 * 28 26 13 49 49 H 1.08994 * 110.90392 * 102.11153 * 29 2 1 50 50 H 1.08999 * 110.93513 * 338.52429 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0721 -0.7776 1.2149 5 8 2.8036 -1.9089 0.7095 6 6 3.2681 -1.5527 -0.6103 7 1 4.1474 -0.9116 -0.5478 8 6 3.5708 -2.7885 -1.4179 9 8 3.3865 -3.8869 -0.9378 10 7 4.0463 -2.6732 -2.6737 11 6 4.3400 -3.8746 -3.4590 12 6 4.8635 -3.4674 -4.8377 13 7 5.1586 -4.6720 -5.6249 14 6 5.8812 -4.3315 -6.8577 15 6 6.5395 -5.5684 -7.4122 16 8 6.3987 -6.6341 -6.8502 17 7 7.2848 -5.4907 -8.5324 18 6 7.8841 -6.6160 -9.0365 19 1 7.7587 -7.5648 -8.5362 20 6 8.6521 -6.5359 -10.1917 21 7 8.8043 -5.3815 -10.8008 22 14 9.4681 -8.0692 -10.8790 23 1 8.4289 -9.0777 -11.2082 24 1 10.2252 -7.7187 -12.1074 25 1 10.3993 -8.6301 -9.8673 26 6 3.9298 -5.4193 -5.9244 27 6 3.6631 -5.7837 -7.3862 28 6 2.8334 -4.6921 -6.7055 29 6 2.0719 -0.7802 -1.2225 30 1 -0.3633 -1.0267 0.0456 31 1 -0.3634 0.5528 0.8662 32 1 -0.3633 0.4738 -0.9119 33 1 2.7374 -0.1395 1.7967 34 1 1.2443 -1.1157 1.8382 35 1 4.1940 -1.7948 -3.0576 36 1 3.4306 -4.4643 -3.5749 37 1 5.0955 -4.4690 -2.9450 38 1 5.7730 -2.8779 -4.7215 39 1 4.1084 -2.8728 -5.3520 40 1 5.1804 -3.9329 -7.5914 41 1 6.6420 -3.5825 -6.6378 42 1 7.3972 -4.6386 -8.9820 43 1 9.3407 -5.3254 -11.6071 44 1 3.6160 -6.1328 -5.1625 45 1 4.3991 -5.4687 -8.1258 46 1 3.1735 -6.7368 -7.5860 47 1 1.7983 -4.9277 -6.4578 48 1 3.0237 -3.6592 -6.9968 49 1 2.4081 -0.0968 -2.0021 50 1 1.3208 -1.4691 -1.6090 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567446229.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:45 Heat of formation + Delta-G solvation = -102.791845 kcal Electronic energy + Delta-G solvation = -29440.964491 eV Core-core repulsion = 25275.430411 eV Total energy + Delta-G solvation = -4165.534080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.42045 -40.94499 -39.64528 -38.92142 -36.33026 -35.84344 -34.55670 -34.31295 -33.20743 -31.86956 -30.20682 -27.88387 -27.21527 -26.07428 -24.99923 -23.89802 -23.06700 -21.65174 -21.56474 -21.20767 -20.40852 -19.68338 -18.54726 -18.05974 -17.85566 -17.59971 -17.17522 -16.51695 -16.44705 -16.18703 -16.13630 -15.64020 -15.50223 -15.33072 -14.99309 -14.84334 -14.44749 -14.40973 -14.11342 -13.61409 -13.55877 -13.48687 -13.45865 -13.15561 -13.01760 -12.77374 -12.70401 -12.40190 -12.29143 -12.14640 -12.10954 -12.09035 -11.91880 -11.65705 -11.59956 -11.45698 -11.07477 -10.94286 -10.61425 -10.26882 -10.16175 -9.94751 -9.17048 -8.42813 -5.90253 1.40444 1.41900 1.50471 1.52129 1.76341 2.12934 2.30753 2.73281 2.89103 3.08052 3.23795 3.40071 3.44648 3.67554 3.74496 3.86393 3.95863 3.97884 4.01065 4.06573 4.11149 4.14863 4.25997 4.31790 4.40639 4.51585 4.56906 4.58800 4.71244 4.72488 4.75663 4.83845 4.89953 4.94132 4.96526 4.98070 5.07280 5.15755 5.17753 5.17971 5.33015 5.37481 5.44374 5.80678 5.86130 6.08399 6.14231 6.51482 6.66562 7.18849 7.20043 7.63116 8.20795 8.74411 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027692 B = 0.001804 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.894458 B =15520.305811 C =15683.482033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 H 0.113 0.887 4 C 0.038 3.962 5 O -0.391 6.391 6 C 0.059 3.941 7 H 0.127 0.873 8 C 0.512 3.488 9 O -0.580 6.580 10 N -0.703 5.703 11 C 0.134 3.866 12 C 0.055 3.945 13 N -0.505 5.505 14 C 0.054 3.946 15 C 0.448 3.552 16 O -0.609 6.609 17 N -0.579 5.579 18 C -0.328 4.328 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.988 3.012 23 H -0.274 1.274 24 H -0.271 1.271 25 H -0.275 1.275 26 C 0.030 3.970 27 C -0.195 4.195 28 C -0.183 4.183 29 C -0.135 4.135 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.421 0.579 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.395 0.605 43 H 0.276 0.724 44 H 0.110 0.890 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.112 0.888 48 H 0.108 0.892 49 H 0.124 0.876 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.421 20.718 15.630 30.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.137 4.137 3 H 0.132 0.868 4 C -0.039 4.039 5 O -0.310 6.310 6 C -0.001 4.001 7 H 0.144 0.856 8 C 0.299 3.701 9 O -0.458 6.458 10 N -0.358 5.358 11 C 0.010 3.990 12 C -0.072 4.072 13 N -0.228 5.228 14 C -0.077 4.077 15 C 0.235 3.765 16 O -0.493 6.493 17 N -0.217 5.217 18 C -0.457 4.457 19 H 0.094 0.906 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.812 3.188 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.200 1.200 26 C -0.079 4.079 27 C -0.232 4.232 28 C -0.222 4.222 29 C -0.172 4.172 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.258 0.742 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.132 0.868 42 H 0.229 0.771 43 H 0.085 0.915 44 H 0.128 0.872 45 H 0.097 0.903 46 H 0.105 0.895 47 H 0.131 0.869 48 H 0.126 0.874 49 H 0.142 0.858 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.183 18.776 16.586 29.294 hybrid contribution 0.257 -0.036 -1.382 1.406 sum -14.926 18.740 15.204 28.375 Atomic orbital electron populations 1.21837 0.93473 1.01704 1.03198 1.22561 0.97493 1.00852 0.92826 0.86847 1.23606 0.96022 0.87311 0.96915 1.89030 1.72645 1.39483 1.29823 1.23169 1.00684 0.92488 0.83783 0.85616 1.20857 0.76337 0.90782 0.82153 1.90733 1.53413 1.30290 1.71393 1.45557 1.65962 1.10683 1.13615 1.21005 1.00033 0.87076 0.90922 1.22265 1.02181 0.90787 0.91970 1.61280 1.20317 1.22380 1.18847 1.21821 0.98620 0.95049 0.92217 1.20673 0.82592 0.91273 0.81991 1.90518 1.65328 1.32114 1.61381 1.41894 1.45119 1.10823 1.23892 1.19554 1.27965 0.89796 1.08409 0.90642 1.25938 0.97858 1.01006 0.96435 1.69655 1.40930 1.25416 1.20233 0.85061 0.78213 0.77806 0.77686 1.19944 1.19502 1.19992 1.22572 0.90088 1.00690 0.94570 1.23157 1.03459 1.00569 0.96024 1.23519 0.97531 0.97364 1.03783 1.23264 0.95585 0.99090 0.99297 0.93815 0.91193 0.91129 0.90460 0.89651 0.74155 0.92429 0.93150 0.88201 0.91173 0.90674 0.86800 0.77145 0.91458 0.87228 0.90266 0.89549 0.86932 0.87414 0.85765 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.93 71.98 0.64 -0.37 16 2 C -0.12 -0.84 3.64 -9.80 -0.04 -0.88 16 3 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 4 C 0.04 0.46 7.37 72.35 0.53 1.00 16 5 O -0.39 -8.60 10.81 -130.75 -1.41 -10.01 16 6 C 0.06 0.90 3.76 30.53 0.11 1.01 16 7 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 8 C 0.51 11.66 7.20 87.66 0.63 12.29 16 9 O -0.58 -20.44 16.57 15.20 0.25 -20.19 16 10 N -0.70 -11.46 5.56 -463.07 -2.57 -14.03 16 11 C 0.13 3.02 5.67 86.38 0.49 3.51 16 12 C 0.06 1.08 4.96 86.30 0.43 1.51 16 13 N -0.51 -15.25 4.34 -875.53 -3.80 -19.05 16 14 C 0.05 1.74 5.00 85.56 0.43 2.17 16 15 C 0.45 20.79 5.84 87.66 0.51 21.30 16 16 O -0.61 -33.52 14.79 -3.07 -0.05 -33.57 16 17 N -0.58 -29.20 5.29 -306.99 -1.62 -30.82 16 18 C -0.33 -18.56 9.68 84.04 0.81 -17.75 16 19 H 0.08 4.60 7.16 -2.91 -0.02 4.57 16 20 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 21 N -0.92 -49.40 13.05 21.66 0.28 -49.11 16 22 Si 0.99 43.35 29.55 68.60 2.03 45.37 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 C 0.03 0.90 4.55 44.91 0.20 1.11 16 27 C -0.19 -6.37 8.48 30.62 0.26 -6.11 16 28 C -0.18 -4.22 9.27 30.62 0.28 -3.94 16 29 C -0.13 -1.16 6.13 31.90 0.20 -0.96 16 30 H 0.04 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.09 1.04 7.70 -2.39 -0.02 1.02 16 35 H 0.42 3.10 8.47 -92.71 -0.79 2.32 16 36 H 0.06 1.48 7.30 -2.39 -0.02 1.46 16 37 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.10 1.62 7.84 -2.38 -0.02 1.60 16 39 H 0.07 1.02 6.87 -2.39 -0.02 1.01 16 40 H 0.08 2.15 5.99 -2.38 -0.01 2.13 16 41 H 0.11 3.10 7.77 -2.38 -0.02 3.08 16 42 H 0.39 18.82 7.90 -92.71 -0.73 18.09 16 43 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 44 H 0.11 3.54 8.03 -2.39 -0.02 3.52 16 45 H 0.08 2.98 4.91 -2.39 -0.01 2.97 16 46 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 47 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 48 H 0.11 2.08 7.15 -2.39 -0.02 2.06 16 49 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 50 H 0.07 0.85 7.78 -2.39 -0.02 0.83 16 Total: -1.00 -81.60 401.86 -1.48 -83.08 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: -0.55 Total: 34.67 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 5.97 Total: 13.67 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -7.71 Total: -113.01 kcal Atomic # 8 Polarization: -62.56 SS G_CDS: -1.21 Total: -63.77 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -81.60 -1.48 -83.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567446229.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.714 kcal (2) G-P(sol) polarization free energy of solvation -81.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds