Wall clock time and date at job start Sat Apr 11 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99913 * 2 1 4 4 O 1.42899 * 109.47276 * 134.99934 * 3 2 1 5 5 C 1.42899 * 114.00307 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47414 * 180.02562 * 5 4 3 7 7 O 1.21277 * 119.99962 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00317 * 180.02562 * 6 5 4 9 9 C 1.46930 * 120.62551 * 5.80264 * 8 6 5 10 10 C 1.53196 * 108.77627 * 233.58585 * 9 8 6 11 11 C 1.53037 * 109.31376 * 305.37481 * 10 9 8 12 12 H 1.08995 * 109.45862 * 301.35034 * 11 10 9 13 13 N 1.46903 * 109.45899 * 181.38426 * 11 10 9 14 14 C 1.46900 * 111.00343 * 84.99301 * 13 11 10 15 15 C 1.50699 * 109.47423 * 179.97438 * 14 13 11 16 16 O 1.21292 * 119.99610 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00286 * 179.97438 * 15 14 13 18 18 C 1.37091 * 120.00326 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99607 * 0.02562 * 18 17 15 20 20 C 1.38940 * 120.00277 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00204 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00121 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47149 * 60.00107 * 22 20 18 24 24 H 1.48501 * 109.47117 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47345 * 300.00188 * 22 20 18 26 26 C 1.53036 * 109.54424 * 61.36052 * 11 10 9 27 27 C 1.46918 * 120.63286 * 185.78752 * 8 6 5 28 28 H 1.09004 * 109.58685 * 246.33719 * 27 8 6 29 29 C 1.53001 * 109.58751 * 6.61910 * 27 8 6 30 30 H 1.07996 * 120.00252 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99892 * 180.02562 * 1 2 3 32 32 H 1.08002 * 120.00079 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47234 * 15.00017 * 3 2 1 34 34 H 1.08997 * 109.46966 * 255.00216 * 3 2 1 35 35 H 1.09000 * 109.47175 * 59.99380 * 5 4 3 36 36 H 1.09009 * 109.46751 * 300.00022 * 5 4 3 37 37 H 1.08994 * 109.58993 * 353.38141 * 9 8 6 38 38 H 1.09004 * 109.58624 * 113.80414 * 9 8 6 39 39 H 1.09007 * 109.48798 * 65.32252 * 10 9 8 40 40 H 1.09001 * 109.49756 * 185.38042 * 10 9 8 41 41 H 1.00896 * 111.00059 * 208.95066 * 13 11 10 42 42 H 1.09003 * 109.47213 * 300.00454 * 14 13 11 43 43 H 1.09005 * 109.46541 * 59.99879 * 14 13 11 44 44 H 0.96999 * 119.99474 * 0.02562 * 17 15 14 45 45 H 0.97000 * 120.00033 * 179.97438 * 21 20 18 46 46 H 1.08994 * 109.49836 * 178.67994 * 26 11 10 47 47 H 1.08997 * 109.49447 * 58.58414 * 26 11 10 48 48 H 1.09004 * 109.46918 * 54.20513 * 29 27 8 49 49 H 1.08998 * 109.47168 * 174.19920 * 29 27 8 50 50 H 1.08998 * 109.47328 * 294.20397 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9077 2.4353 1.0329 6 6 4.9940 2.2569 2.0620 7 8 5.0897 1.2104 2.6674 8 7 5.8586 3.2605 2.3102 9 6 5.6794 4.5759 1.6804 10 6 6.9799 4.9636 0.9697 11 6 8.1403 4.8961 1.9651 12 1 7.9427 5.5691 2.7993 13 7 9.3839 5.2993 1.2951 14 6 9.5396 6.7599 1.3088 15 6 10.8237 7.1348 0.6149 16 8 11.5386 6.2702 0.1538 17 7 11.1773 8.4308 0.5057 18 6 12.3452 8.7718 -0.1261 19 1 12.9818 8.0020 -0.5366 20 6 12.7100 10.1078 -0.2381 21 7 11.9357 11.0446 0.2619 22 14 14.3010 10.5725 -1.0996 23 1 14.2619 10.0923 -2.5043 24 1 14.4588 12.0491 -1.0850 25 1 15.4474 9.9457 -0.3939 26 6 8.2837 3.4649 2.4879 27 6 6.9980 3.0603 3.2159 28 1 6.8701 3.6766 4.1058 29 6 7.0793 1.5868 3.6199 30 1 -0.5400 0.9352 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3855 2.1161 0.2660 34 1 2.4754 1.4868 -0.9926 35 1 3.2677 3.2695 1.3204 36 1 4.3579 2.6409 0.0616 37 1 4.8673 4.5262 0.9552 38 1 5.4451 5.3177 2.4440 39 1 7.1651 4.2722 0.1475 40 1 6.8929 5.9777 0.5796 41 1 10.1829 4.8465 1.7129 42 1 8.6983 7.2199 0.7904 43 1 9.5678 7.1126 2.3399 44 1 10.6054 9.1222 0.8741 45 1 12.1905 11.9772 0.1839 46 1 9.1250 3.4126 3.1789 47 1 8.4567 2.7878 1.6515 48 1 7.1086 0.9657 2.7245 49 1 7.9823 1.4203 4.2072 50 1 6.2049 1.3245 4.2155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569513892.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:07 Heat of formation + Delta-G solvation = -77.265821 kcal Electronic energy + Delta-G solvation = -29228.708997 eV Core-core repulsion = 25064.281809 eV Total energy + Delta-G solvation = -4164.427189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.84736 -38.76676 -38.23857 -37.48505 -35.15766 -34.33370 -33.88580 -33.19718 -31.41037 -31.06238 -28.85925 -27.65562 -26.24368 -25.90647 -24.38727 -23.67376 -22.19626 -20.75459 -20.43578 -19.42819 -19.09158 -17.90595 -17.55851 -16.89148 -16.84599 -16.27654 -15.95061 -15.75756 -15.34328 -15.17489 -14.74700 -14.53061 -14.35359 -14.06407 -13.90568 -13.79497 -13.67855 -13.24511 -13.12618 -12.71540 -12.52433 -12.44505 -12.31071 -12.21618 -12.04415 -11.81842 -11.61585 -11.42532 -11.41136 -11.23898 -11.06711 -10.87532 -10.59074 -10.45868 -10.39852 -10.23287 -9.78071 -9.52168 -9.24974 -8.85635 -8.48122 -8.11312 -7.98271 -6.43831 -3.84765 1.68282 2.33524 2.45781 3.18638 3.24459 3.28887 3.48603 3.88116 4.01108 4.18434 4.24722 4.46329 4.54063 4.61328 4.65103 4.71320 4.78086 4.79933 4.91452 4.94128 5.02729 5.05003 5.09245 5.20022 5.21657 5.29506 5.37573 5.38473 5.41877 5.58389 5.69506 5.74900 5.80998 5.91240 5.93453 6.05536 6.12369 6.13593 6.17323 6.20223 6.28292 6.46669 6.65025 7.12804 7.19956 7.52990 7.62084 7.96009 8.03959 8.59035 9.15743 9.51907 10.03476 10.73749 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021384 B = 0.001750 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.076332 B =15995.011974 C =16753.318353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.149 4.149 3 C 0.086 3.914 4 O -0.360 6.360 5 C 0.042 3.958 6 C 0.518 3.482 7 O -0.512 6.512 8 N -0.608 5.608 9 C 0.105 3.895 10 C -0.125 4.125 11 C 0.088 3.912 12 H 0.044 0.956 13 N -0.665 5.665 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.301 4.301 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C -0.133 4.133 27 C 0.150 3.850 28 H 0.073 0.927 29 C -0.139 4.139 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.351 0.649 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.046 0.954 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.727 -13.700 4.047 26.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.167 4.167 3 C 0.010 3.990 4 O -0.278 6.278 5 C -0.038 4.038 6 C 0.305 3.695 7 O -0.387 6.387 8 N -0.344 5.344 9 C -0.018 4.018 10 C -0.164 4.164 11 C -0.022 4.022 12 H 0.062 0.938 13 N -0.297 5.297 14 C -0.081 4.081 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.172 4.172 27 C 0.047 3.953 28 H 0.091 0.909 29 C -0.196 4.196 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.172 0.828 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.084 0.916 49 H 0.065 0.935 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.391 -14.813 3.546 26.260 hybrid contribution 0.625 1.456 0.402 1.635 sum -20.766 -13.357 3.949 25.004 Atomic orbital electron populations 1.23845 0.95498 1.02354 1.00003 1.22712 0.95607 0.98178 1.00243 1.21625 0.88710 0.96233 0.92433 1.88030 1.44347 1.34976 1.60485 1.22325 0.93370 0.89114 0.99027 1.20123 0.82284 0.83716 0.83398 1.90773 1.71503 1.27481 1.48963 1.48128 1.27180 1.11849 1.47229 1.21867 0.98715 0.83938 0.97262 1.21959 0.92700 1.02972 0.98776 1.21470 0.91204 0.95162 0.94375 0.93813 1.60081 1.04070 1.06427 1.59162 1.21718 0.98427 0.89013 0.98974 1.19816 0.88112 0.83604 0.85949 1.90527 1.54746 1.48813 1.52637 1.41854 1.21686 1.05512 1.50944 1.19658 0.98390 0.92528 1.32446 0.87979 1.25253 0.99461 0.95332 0.97813 1.69604 1.38054 1.00937 1.45738 0.85917 0.81393 0.77120 0.79785 1.19881 1.20970 1.19917 1.22213 0.97054 0.96819 1.01071 1.21270 0.84249 0.98544 0.91214 0.90919 1.22211 1.01562 0.93310 1.02562 0.88398 0.87684 0.86390 0.92551 0.91972 0.90383 0.90071 0.89792 0.90854 0.90482 0.90259 0.82849 0.89705 0.93915 0.77487 0.91823 0.90502 0.90279 0.91613 0.93488 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 14.31 29.01 0.42 -0.62 16 2 C -0.15 -1.08 9.89 -36.03 -0.36 -1.44 16 3 C 0.09 0.62 6.35 36.01 0.23 0.85 16 4 O -0.36 -3.80 9.86 -55.14 -0.54 -4.35 16 5 C 0.04 0.34 4.77 36.00 0.17 0.52 16 6 C 0.52 5.73 7.58 -10.99 -0.08 5.65 16 7 O -0.51 -7.45 12.07 -14.35 -0.17 -7.62 16 8 N -0.61 -5.77 2.97 -165.22 -0.49 -6.26 16 9 C 0.11 0.77 6.35 -3.71 -0.02 0.75 16 10 C -0.13 -1.21 5.59 -26.61 -0.15 -1.36 16 11 C 0.09 0.99 2.46 -67.67 -0.17 0.82 16 12 H 0.04 0.47 7.80 -51.93 -0.40 0.06 16 13 N -0.66 -10.11 5.93 -107.95 -0.64 -10.75 16 14 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 15 C 0.44 10.16 7.82 -10.99 -0.09 10.08 16 16 O -0.58 -15.66 15.78 5.55 0.09 -15.57 16 17 N -0.56 -14.04 5.29 -10.97 -0.06 -14.10 16 18 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 19 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 22 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 C -0.13 -1.38 4.65 -26.61 -0.12 -1.51 16 27 C 0.15 1.49 3.49 -67.60 -0.24 1.25 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 C -0.14 -1.53 7.61 37.16 0.28 -1.25 16 30 H 0.10 0.45 7.90 -52.49 -0.41 0.04 16 31 H 0.10 0.48 8.06 -52.49 -0.42 0.06 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.06 0.32 7.86 -51.93 -0.41 -0.09 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.45 7.70 -51.93 -0.40 0.05 16 36 H 0.08 0.53 7.93 -51.92 -0.41 0.12 16 37 H 0.08 0.43 5.93 -51.93 -0.31 0.12 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 40 H 0.08 0.76 7.43 -51.93 -0.39 0.38 16 41 H 0.35 5.63 8.03 -39.29 -0.32 5.31 16 42 H 0.08 1.29 7.42 -51.93 -0.39 0.91 16 43 H 0.04 0.65 8.06 -51.93 -0.42 0.23 16 44 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 47 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.06 0.84 6.96 -51.93 -0.36 0.48 16 49 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.08 0.98 6.54 -51.93 -0.34 0.64 16 LS Contribution 403.81 15.07 6.09 6.09 Total: -1.00 -33.72 403.81 -8.62 -42.33 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -8.19 Total: 11.23 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -0.40 Total: 6.64 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.47 Total: -54.59 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.63 Total: -27.54 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.72 -8.62 -42.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569513892.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.931 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds