Wall clock time and date at job start Sat Apr 11 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99913 * 2 1 4 4 O 1.42899 * 109.47276 * 134.99934 * 3 2 1 5 5 C 1.42899 * 114.00307 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47414 * 180.02562 * 5 4 3 7 7 O 1.21277 * 119.99962 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00317 * 180.02562 * 6 5 4 9 9 C 1.46930 * 120.62551 * 5.80264 * 8 6 5 10 10 C 1.53196 * 108.77627 * 233.58585 * 9 8 6 11 11 C 1.53037 * 109.31376 * 305.37481 * 10 9 8 12 12 H 1.08995 * 109.45862 * 301.35034 * 11 10 9 13 13 N 1.46903 * 109.45899 * 181.38426 * 11 10 9 14 14 C 1.46900 * 111.00343 * 84.99301 * 13 11 10 15 15 C 1.50699 * 109.47423 * 179.97438 * 14 13 11 16 16 O 1.21292 * 119.99610 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00286 * 179.97438 * 15 14 13 18 18 C 1.37091 * 120.00326 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99607 * 0.02562 * 18 17 15 20 20 C 1.38940 * 120.00277 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00204 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00121 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47149 * 60.00107 * 22 20 18 24 24 H 1.48501 * 109.47117 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47345 * 300.00188 * 22 20 18 26 26 C 1.53036 * 109.54424 * 61.36052 * 11 10 9 27 27 C 1.46918 * 120.63286 * 185.78752 * 8 6 5 28 28 H 1.09004 * 109.58685 * 246.33719 * 27 8 6 29 29 C 1.53001 * 109.58751 * 6.61910 * 27 8 6 30 30 H 1.07996 * 120.00252 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99892 * 180.02562 * 1 2 3 32 32 H 1.08002 * 120.00079 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47234 * 15.00017 * 3 2 1 34 34 H 1.08997 * 109.46966 * 255.00216 * 3 2 1 35 35 H 1.09000 * 109.47175 * 59.99380 * 5 4 3 36 36 H 1.09009 * 109.46751 * 300.00022 * 5 4 3 37 37 H 1.08994 * 109.58993 * 353.38141 * 9 8 6 38 38 H 1.09004 * 109.58624 * 113.80414 * 9 8 6 39 39 H 1.09007 * 109.48798 * 65.32252 * 10 9 8 40 40 H 1.09001 * 109.49756 * 185.38042 * 10 9 8 41 41 H 1.00896 * 111.00059 * 208.95066 * 13 11 10 42 42 H 1.09003 * 109.47213 * 300.00454 * 14 13 11 43 43 H 1.09005 * 109.46541 * 59.99879 * 14 13 11 44 44 H 0.96999 * 119.99474 * 0.02562 * 17 15 14 45 45 H 0.97000 * 120.00033 * 179.97438 * 21 20 18 46 46 H 1.08994 * 109.49836 * 178.67994 * 26 11 10 47 47 H 1.08997 * 109.49447 * 58.58414 * 26 11 10 48 48 H 1.09004 * 109.46918 * 54.20513 * 29 27 8 49 49 H 1.08998 * 109.47168 * 174.19920 * 29 27 8 50 50 H 1.08998 * 109.47328 * 294.20397 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9077 2.4353 1.0329 6 6 4.9940 2.2569 2.0620 7 8 5.0897 1.2104 2.6674 8 7 5.8586 3.2605 2.3102 9 6 5.6794 4.5759 1.6804 10 6 6.9799 4.9636 0.9697 11 6 8.1403 4.8961 1.9651 12 1 7.9427 5.5691 2.7993 13 7 9.3839 5.2993 1.2951 14 6 9.5396 6.7599 1.3088 15 6 10.8237 7.1348 0.6149 16 8 11.5386 6.2702 0.1538 17 7 11.1773 8.4308 0.5057 18 6 12.3452 8.7718 -0.1261 19 1 12.9818 8.0020 -0.5366 20 6 12.7100 10.1078 -0.2381 21 7 11.9357 11.0446 0.2619 22 14 14.3010 10.5725 -1.0996 23 1 14.2619 10.0923 -2.5043 24 1 14.4588 12.0491 -1.0850 25 1 15.4474 9.9457 -0.3939 26 6 8.2837 3.4649 2.4879 27 6 6.9980 3.0603 3.2159 28 1 6.8701 3.6766 4.1058 29 6 7.0793 1.5868 3.6199 30 1 -0.5400 0.9352 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3855 2.1161 0.2660 34 1 2.4754 1.4868 -0.9926 35 1 3.2677 3.2695 1.3204 36 1 4.3579 2.6409 0.0616 37 1 4.8673 4.5262 0.9552 38 1 5.4451 5.3177 2.4440 39 1 7.1651 4.2722 0.1475 40 1 6.8929 5.9777 0.5796 41 1 10.1829 4.8465 1.7129 42 1 8.6983 7.2199 0.7904 43 1 9.5678 7.1126 2.3399 44 1 10.6054 9.1222 0.8741 45 1 12.1905 11.9772 0.1839 46 1 9.1250 3.4126 3.1789 47 1 8.4567 2.7878 1.6515 48 1 7.1086 0.9657 2.7245 49 1 7.9823 1.4203 4.2072 50 1 6.2049 1.3245 4.2155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569513892.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:06 Heat of formation + Delta-G solvation = -101.370742 kcal Electronic energy + Delta-G solvation = -29229.754265 eV Core-core repulsion = 25064.281809 eV Total energy + Delta-G solvation = -4165.472456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.64527 -40.18926 -39.26068 -38.42798 -36.34960 -35.75007 -34.86622 -33.96352 -33.27124 -32.22757 -29.64125 -28.54598 -27.67211 -26.49089 -25.83648 -24.67021 -23.03096 -21.59657 -21.10480 -20.95497 -20.03286 -19.84058 -18.23912 -17.82026 -17.61281 -17.48291 -16.86302 -16.69397 -16.49878 -16.30337 -16.13902 -15.64182 -15.46151 -15.35271 -14.96177 -14.86305 -14.56638 -14.26522 -14.01795 -13.76353 -13.50559 -13.48868 -13.34140 -13.18327 -13.05908 -12.99894 -12.88788 -12.64800 -12.58249 -12.42102 -12.11927 -12.04778 -11.89052 -11.73854 -11.49319 -11.44484 -10.96647 -10.32873 -10.28150 -10.09339 -10.00334 -9.63914 -9.30643 -8.45726 -5.94314 1.19214 1.40404 1.42649 1.53096 1.54992 1.78204 2.07136 2.29886 2.88069 2.92634 3.21803 3.46802 3.53558 3.76424 3.80542 4.00629 4.06504 4.14377 4.16600 4.22029 4.25519 4.26942 4.31118 4.45837 4.46345 4.48727 4.53151 4.54145 4.60760 4.61357 4.72861 4.77919 4.88944 4.97817 4.98876 5.04293 5.21657 5.32591 5.38747 5.42060 5.62313 5.66255 5.70768 5.92734 6.09086 6.15262 6.40391 6.41188 6.61730 7.13959 7.17830 7.57946 8.13720 8.71203 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021384 B = 0.001750 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.076332 B =15995.011974 C =16753.318353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.177 4.177 3 C 0.084 3.916 4 O -0.396 6.396 5 C 0.042 3.958 6 C 0.509 3.491 7 O -0.557 6.557 8 N -0.605 5.605 9 C 0.108 3.892 10 C -0.123 4.123 11 C 0.089 3.911 12 H 0.061 0.939 13 N -0.680 5.680 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.918 5.918 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.273 1.273 26 C -0.125 4.125 27 C 0.152 3.848 28 H 0.090 0.910 29 C -0.129 4.129 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.343 0.657 42 H 0.107 0.893 43 H 0.067 0.933 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.081 0.919 47 H 0.059 0.941 48 H 0.041 0.959 49 H 0.057 0.943 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.455 -12.066 4.169 26.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.008 3.992 4 O -0.315 6.315 5 C -0.037 4.037 6 C 0.297 3.703 7 O -0.436 6.436 8 N -0.340 5.340 9 C -0.014 4.014 10 C -0.162 4.162 11 C -0.020 4.020 12 H 0.079 0.921 13 N -0.313 5.313 14 C -0.064 4.064 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.466 4.466 19 H 0.095 0.905 20 C -0.210 4.210 21 N -0.559 5.559 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.198 1.198 26 C -0.163 4.163 27 C 0.048 3.952 28 H 0.108 0.892 29 C -0.187 4.187 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.162 0.838 42 H 0.125 0.875 43 H 0.085 0.915 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.100 0.900 47 H 0.078 0.922 48 H 0.060 0.940 49 H 0.076 0.924 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.154 -13.143 3.669 26.876 hybrid contribution 1.123 0.883 0.370 1.476 sum -22.031 -12.260 4.038 25.534 Atomic orbital electron populations 1.24058 0.94992 1.03521 0.97768 1.22782 0.96336 0.98054 1.02388 1.21782 0.88340 0.96658 0.92380 1.87989 1.45456 1.36425 1.61623 1.22446 0.92979 0.89385 0.98886 1.20741 0.82857 0.83204 0.83463 1.90759 1.72884 1.29208 1.50746 1.48220 1.26520 1.12508 1.46796 1.22050 0.98179 0.82974 0.98238 1.21937 0.93189 1.02944 0.98090 1.21588 0.89829 0.95479 0.95119 0.92124 1.60120 1.05311 1.05355 1.60479 1.21574 0.95110 0.90258 0.99507 1.20964 0.89525 0.82446 0.84697 1.90497 1.56701 1.49818 1.54216 1.41915 1.21292 1.06461 1.51296 1.19619 0.99807 0.92721 1.34429 0.90478 1.25988 1.02307 0.94774 0.97961 1.69657 1.39139 1.01274 1.45851 0.85021 0.77601 0.77395 0.78514 1.19827 1.19434 1.19821 1.22112 0.97614 0.96094 1.00501 1.21242 0.84251 0.97774 0.91883 0.89247 1.22045 1.01307 0.93981 1.01326 0.86908 0.86817 0.87755 0.90662 0.90926 0.87235 0.88197 0.87022 0.88768 0.92168 0.89640 0.83751 0.87481 0.91542 0.76902 0.91295 0.90035 0.92213 0.93999 0.92427 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 14.31 67.78 0.97 -0.70 16 2 C -0.18 -2.49 9.89 25.65 0.25 -2.24 16 3 C 0.08 1.10 6.35 71.24 0.45 1.55 16 4 O -0.40 -8.07 9.86 -129.94 -1.28 -9.35 16 5 C 0.04 0.61 4.77 71.23 0.34 0.95 16 6 C 0.51 10.81 7.58 87.66 0.66 11.47 16 7 O -0.56 -16.63 12.07 16.02 0.19 -16.43 16 8 N -0.61 -10.37 2.97 -795.02 -2.36 -12.73 16 9 C 0.11 1.20 6.35 86.36 0.55 1.75 16 10 C -0.12 -2.05 5.59 30.67 0.17 -1.88 16 11 C 0.09 1.80 2.46 44.94 0.11 1.91 16 12 H 0.06 1.07 7.80 -2.39 -0.02 1.05 16 13 N -0.68 -19.85 5.93 -495.44 -2.94 -22.79 16 14 C 0.07 2.14 5.96 85.56 0.51 2.65 16 15 C 0.44 20.15 7.82 87.66 0.69 20.84 16 16 O -0.63 -34.31 15.78 -3.07 -0.05 -34.36 16 17 N -0.57 -28.66 5.29 -307.00 -1.62 -30.28 16 18 C -0.34 -18.88 9.68 84.04 0.81 -18.06 16 19 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 20 C -0.01 -0.54 5.50 84.92 0.47 -0.08 16 21 N -0.92 -48.56 13.05 21.66 0.28 -48.28 16 22 Si 0.99 42.40 29.55 68.60 2.03 44.42 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 C -0.12 -2.46 4.65 30.67 0.14 -2.32 16 27 C 0.15 2.81 3.49 44.98 0.16 2.96 16 28 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 29 C -0.13 -2.89 7.61 71.98 0.55 -2.34 16 30 H 0.11 0.77 7.90 -2.91 -0.02 0.75 16 31 H 0.11 0.89 8.06 -2.91 -0.02 0.87 16 32 H 0.10 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.08 0.66 7.86 -2.39 -0.02 0.64 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.11 0.87 7.70 -2.39 -0.02 0.85 16 36 H 0.10 1.05 7.93 -2.38 -0.02 1.03 16 37 H 0.11 0.66 5.93 -2.39 -0.01 0.65 16 38 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.09 1.36 7.43 -2.39 -0.02 1.34 16 41 H 0.34 10.88 8.03 -89.70 -0.72 10.16 16 42 H 0.11 2.95 7.42 -2.39 -0.02 2.93 16 43 H 0.07 1.82 8.06 -2.38 -0.02 1.80 16 44 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16 45 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 46 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 47 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.04 1.12 6.96 -2.38 -0.02 1.11 16 49 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.06 1.63 6.54 -2.39 -0.02 1.61 16 Total: -1.00 -75.74 403.81 0.58 -75.16 By element: Atomic # 1 Polarization: 38.67 SS G_CDS: -0.50 Total: 38.17 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 6.83 Total: 16.47 kcal Atomic # 7 Polarization: -107.44 SS G_CDS: -6.64 Total: -114.08 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: -1.14 Total: -60.14 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -75.74 0.58 -75.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569513892.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.212 kcal (2) G-P(sol) polarization free energy of solvation -75.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds