Wall clock time and date at job start Sat Apr 11 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.49545 * 2 1 4 4 C 1.53042 * 109.49374 * 120.09300 * 2 1 3 5 5 C 1.53038 * 109.54152 * 181.31723 * 4 2 1 6 6 C 1.53630 * 109.23973 * 298.51544 * 5 4 2 7 7 N 1.46921 * 108.54529 * 54.84820 * 6 5 4 8 8 C 1.34783 * 120.62886 * 126.36883 * 7 6 5 9 9 O 1.21345 * 119.99979 * 186.38421 * 8 7 6 10 10 C 1.49448 * 119.99761 * 6.38019 * 8 7 6 11 11 O 1.21351 * 120.00071 * 6.58456 * 10 8 7 12 12 N 1.34770 * 119.99943 * 186.30421 * 10 8 7 13 13 C 1.46501 * 120.00133 * 180.28018 * 12 10 8 14 14 C 1.53002 * 109.47139 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.68183 * 60.62772 * 14 13 12 16 16 C 1.53299 * 109.68175 * 181.14250 * 14 13 12 17 17 O 1.42976 * 109.21812 * 171.98795 * 16 14 13 18 18 C 1.42962 * 114.19754 * 297.47978 * 17 16 14 19 19 C 1.53293 * 109.22737 * 62.56121 * 18 17 16 20 20 N 1.47150 * 109.68335 * 300.10691 * 14 13 12 21 21 C 1.36930 * 120.98266 * 9.76508 * 20 14 13 22 22 H 1.08004 * 119.99666 * 328.65134 * 21 20 14 23 23 C 1.38816 * 120.00424 * 148.65443 * 21 20 14 24 24 N 1.31614 * 119.99516 * 350.19183 * 23 21 20 25 25 Si 1.86800 * 120.00094 * 170.19521 * 23 21 20 26 26 H 1.48498 * 109.47226 * 59.99884 * 25 23 21 27 27 H 1.48499 * 109.46883 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46816 * 299.99777 * 25 23 21 29 29 C 1.46927 * 118.74294 * 306.09867 * 7 6 5 30 30 H 1.09000 * 109.47460 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47360 * 300.07465 * 1 2 3 32 32 H 1.09005 * 109.46856 * 60.06571 * 1 2 3 33 33 H 1.09006 * 109.46305 * 301.34049 * 4 2 1 34 34 H 1.09001 * 109.46282 * 61.29540 * 4 2 1 35 35 H 1.09004 * 109.49611 * 58.58537 * 5 4 2 36 36 H 1.08995 * 109.50320 * 178.65489 * 5 4 2 37 37 H 1.09005 * 109.73401 * 295.11695 * 6 5 4 38 38 H 1.08997 * 109.66442 * 174.54573 * 6 5 4 39 39 H 0.96999 * 120.00065 * 0.27411 * 12 10 8 40 40 H 1.08999 * 109.47253 * 299.99621 * 13 12 10 41 41 H 1.08997 * 109.47596 * 59.99833 * 13 12 10 42 42 H 1.09006 * 109.51265 * 291.95275 * 16 14 13 43 43 H 1.08992 * 109.51173 * 52.10055 * 16 14 13 44 44 H 1.09003 * 109.50857 * 302.63190 * 18 17 16 45 45 H 1.09002 * 109.50639 * 182.48771 * 18 17 16 46 46 H 1.09001 * 109.68275 * 187.97307 * 19 18 17 47 47 H 1.09007 * 109.71253 * 67.43632 * 19 18 17 48 48 H 0.97000 * 119.99642 * 180.02562 * 24 23 21 49 49 H 1.08997 * 109.58891 * 173.64430 * 29 7 6 50 50 H 1.08994 * 109.58687 * 294.07119 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7234 1.2482 5 6 3.5707 -0.6954 1.2661 6 6 4.1050 -1.4319 0.0282 7 7 3.5046 -0.8290 -1.1696 8 6 4.2812 -0.3860 -2.1782 9 8 3.7838 0.2135 -3.1086 10 6 5.7548 -0.6332 -2.1506 11 8 6.2365 -1.3336 -1.2845 12 7 6.5481 -0.0829 -3.0909 13 6 7.9919 -0.3302 -3.0674 14 6 8.6541 0.4040 -4.2351 15 1 8.4788 1.4757 -4.1417 16 6 10.1616 0.1254 -4.2319 17 8 10.7411 0.6579 -5.4255 18 6 10.2521 0.0632 -6.6301 19 6 8.7495 0.3394 -6.7556 20 7 8.0945 -0.0809 -5.5067 21 6 6.9964 -0.8986 -5.5274 22 1 6.8231 -1.5906 -4.7164 23 6 6.1058 -0.8382 -6.5905 24 7 6.2051 0.1287 -7.4779 25 14 4.7666 -2.1292 -6.7615 26 1 3.8939 -2.0994 -5.5604 27 1 3.9545 -1.8427 -7.9713 28 1 5.3872 -3.4722 -6.8893 29 6 2.0413 -0.7236 -1.2497 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5150 0.8893 32 1 -0.3633 0.5128 -0.8906 33 1 1.6580 -0.2250 2.1390 34 1 1.6966 -1.7576 1.2350 35 1 3.9158 0.3385 1.2544 36 1 3.9332 -1.1898 2.1673 37 1 3.8337 -2.4863 0.0816 38 1 5.1895 -1.3333 -0.0176 39 1 6.1631 0.4769 -3.7832 40 1 8.4075 0.0325 -2.1273 41 1 8.1789 -1.4001 -3.1585 42 1 10.6175 0.5989 -3.3624 43 1 10.3329 -0.9503 -4.1931 44 1 10.4233 -1.0128 -6.6005 45 1 10.7739 0.4922 -7.4857 46 1 8.3409 -0.2263 -7.5929 47 1 8.5837 1.4047 -6.9166 48 1 5.5825 0.1711 -8.2205 49 1 1.7638 -0.1575 -2.1388 50 1 1.6052 -1.7213 -1.2984 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570072215.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:44 Heat of formation + Delta-G solvation = -94.296777 kcal Electronic energy + Delta-G solvation = -31636.298001 eV Core-core repulsion = 27471.132294 eV Total energy + Delta-G solvation = -4165.165706 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.02580 -40.42121 -39.64522 -38.75570 -37.09603 -35.53948 -34.63417 -33.30468 -32.80560 -32.16276 -29.11995 -28.47932 -27.51187 -26.62004 -25.25868 -24.22525 -23.28450 -23.00747 -21.56568 -21.29136 -20.60884 -18.97555 -18.17119 -18.12577 -17.69755 -17.18537 -16.91714 -16.47249 -16.28135 -16.24862 -15.95706 -15.74654 -15.35653 -15.29701 -15.06955 -14.99016 -14.72519 -14.46865 -14.35423 -14.08005 -13.66883 -13.52144 -13.14190 -13.10382 -12.91847 -12.77166 -12.73479 -12.54710 -12.43045 -12.20405 -12.04220 -12.01258 -11.88229 -11.82665 -11.66187 -11.34627 -11.28889 -10.74564 -10.58379 -10.19589 -10.00860 -9.78715 -8.63559 -7.91422 -5.41424 0.35241 1.32600 1.36289 1.41367 1.42994 2.11669 2.40891 2.53389 3.04313 3.24549 3.34437 3.46465 3.73228 3.81373 3.91733 3.96922 4.08637 4.21056 4.28644 4.31965 4.39549 4.48208 4.54702 4.58008 4.61919 4.63905 4.66734 4.73586 4.76369 4.83058 4.87667 4.93192 5.01884 5.05451 5.10706 5.15009 5.19954 5.27825 5.29544 5.34848 5.45630 5.55687 5.63508 5.65193 5.97774 6.27949 6.29415 6.38370 6.71241 6.97058 7.08370 7.74254 8.29143 9.12815 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.003620 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.232415 B = 7733.561630 C = 9081.247685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.061 0.939 4 C -0.111 4.111 5 C -0.128 4.128 6 C 0.059 3.941 7 N -0.580 5.580 8 C 0.496 3.504 9 O -0.551 6.551 10 C 0.502 3.498 11 O -0.535 6.535 12 N -0.663 5.663 13 C 0.136 3.864 14 C 0.121 3.879 15 H 0.035 0.965 16 C 0.060 3.940 17 O -0.397 6.397 18 C 0.048 3.952 19 C 0.148 3.852 20 N -0.607 5.607 21 C -0.243 4.243 22 H 0.069 0.931 23 C -0.028 4.028 24 N -0.923 5.923 25 Si 0.940 3.060 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.277 1.277 29 C 0.104 3.896 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.133 0.867 39 H 0.416 0.584 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.122 0.878 43 H 0.054 0.946 44 H 0.046 0.954 45 H 0.104 0.896 46 H 0.066 0.934 47 H 0.004 0.996 48 H 0.249 0.751 49 H 0.070 0.930 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.473 -1.710 17.517 17.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.080 0.920 4 C -0.149 4.149 5 C -0.166 4.166 6 C -0.062 4.062 7 N -0.313 5.313 8 C 0.279 3.721 9 O -0.429 6.429 10 C 0.283 3.717 11 O -0.416 6.416 12 N -0.313 5.313 13 C 0.013 3.987 14 C 0.015 3.985 15 H 0.053 0.947 16 C -0.019 4.019 17 O -0.316 6.316 18 C -0.029 4.029 19 C 0.023 3.977 20 N -0.333 5.333 21 C -0.373 4.373 22 H 0.086 0.914 23 C -0.225 4.225 24 N -0.569 5.569 25 Si 0.770 3.230 26 H -0.217 1.217 27 H -0.220 1.220 28 H -0.203 1.203 29 C -0.017 4.017 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.150 0.850 39 H 0.254 0.746 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.140 0.860 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.122 0.878 46 H 0.084 0.916 47 H 0.022 0.978 48 H 0.059 0.941 49 H 0.088 0.912 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.343 -1.704 17.463 17.861 hybrid contribution -1.498 -0.440 -1.314 2.041 sum -4.841 -2.144 16.149 16.994 Atomic orbital electron populations 1.21741 0.92700 1.02831 1.02528 1.21461 0.97199 0.99179 0.94109 0.92037 1.21621 0.94804 1.01317 0.97126 1.21993 0.96404 1.00723 0.97496 1.23189 1.03466 0.97058 0.82461 1.48111 1.07143 1.58136 1.17865 1.20381 0.88440 0.80140 0.83141 1.90779 1.75451 1.41024 1.35666 1.20003 0.87523 0.81537 0.82613 1.90373 1.75652 1.39471 1.36127 1.46065 1.08634 1.48472 1.28166 1.21423 0.78208 1.00703 0.98343 1.21636 0.94304 0.96243 0.86312 0.94709 1.22994 0.91797 0.98967 0.88111 1.87806 1.64857 1.64149 1.14774 1.23190 0.95360 0.97201 0.87182 1.21258 0.89924 0.96656 0.89896 1.44291 1.31789 1.56693 1.00500 1.19163 0.99128 1.12549 1.06498 0.91392 1.25573 0.98937 0.98405 0.99564 1.70062 1.38806 1.32414 1.15581 0.85764 0.80405 0.80242 0.76597 1.21742 1.21954 1.20329 1.21975 0.77940 1.01822 0.99980 0.91502 0.90746 0.93014 0.89831 0.90746 0.92531 0.88360 0.90682 0.84997 0.74594 0.88216 0.91549 0.85972 0.92769 0.93570 0.87834 0.91594 0.97826 0.94135 0.91193 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.20 71.98 0.66 -1.36 16 2 C -0.10 -1.88 2.87 -10.72 -0.03 -1.91 16 3 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.11 -1.64 5.16 30.62 0.16 -1.49 16 5 C -0.13 -2.22 6.10 30.82 0.19 -2.03 16 6 C 0.06 1.40 6.07 86.51 0.53 1.93 16 7 N -0.58 -17.37 2.97 -819.65 -2.43 -19.80 16 8 C 0.50 18.92 7.75 87.27 0.68 19.60 16 9 O -0.55 -25.00 15.92 -3.23 -0.05 -25.06 16 10 C 0.50 18.85 7.76 87.27 0.68 19.53 16 11 O -0.53 -19.15 13.12 -3.25 -0.04 -19.19 16 12 N -0.66 -25.89 3.73 -464.42 -1.73 -27.63 16 13 C 0.14 4.65 4.45 86.38 0.38 5.03 16 14 C 0.12 4.53 3.22 44.97 0.14 4.68 16 15 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 16 C 0.06 1.87 6.29 72.08 0.45 2.33 16 17 O -0.40 -14.25 10.74 -148.98 -1.60 -15.85 16 18 C 0.05 1.78 6.99 72.08 0.50 2.29 16 19 C 0.15 6.86 5.37 86.35 0.46 7.32 16 20 N -0.61 -28.24 3.03 -673.71 -2.04 -30.28 16 21 C -0.24 -12.47 7.01 84.04 0.59 -11.88 16 22 H 0.07 3.49 5.81 -2.91 -0.02 3.48 16 23 C -0.03 -1.51 5.08 84.86 0.43 -1.08 16 24 N -0.92 -53.17 11.09 21.65 0.24 -52.93 16 25 Si 0.94 46.35 29.57 68.60 2.03 48.38 16 26 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 27 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 28 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 29 C 0.10 2.66 5.72 86.36 0.49 3.16 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.13 3.68 4.17 -59.40 -0.25 3.43 16 39 H 0.42 18.71 6.74 -92.71 -0.62 18.08 16 40 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.07 2.39 7.61 -2.39 -0.02 2.37 16 42 H 0.12 2.92 8.14 -2.38 -0.02 2.91 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 46 H 0.07 3.41 6.31 -2.39 -0.02 3.40 16 47 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 48 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 49 H 0.07 2.13 7.00 -2.39 -0.02 2.11 16 50 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -65.92 384.87 0.77 -65.15 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.08 Total: 31.07 kcal Atomic # 6 Polarization: 39.80 SS G_CDS: 6.32 Total: 46.12 kcal Atomic # 7 Polarization: -124.66 SS G_CDS: -5.97 Total: -130.63 kcal Atomic # 8 Polarization: -58.40 SS G_CDS: -1.69 Total: -60.09 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -65.92 0.77 -65.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570072215.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.145 kcal (2) G-P(sol) polarization free energy of solvation -65.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds