Wall clock time and date at job start Sat Apr 11 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.87578 * 2 1 4 4 C 1.54331 * 109.88350 * 238.98205 * 2 1 3 5 5 H 1.09002 * 110.71869 * 144.07834 * 4 2 1 6 6 N 1.46902 * 110.71518 * 20.98443 * 4 2 1 7 7 C 1.46906 * 110.99573 * 157.44039 * 6 4 2 8 8 C 1.50699 * 109.46990 * 180.02562 * 7 6 4 9 9 O 1.21287 * 119.99883 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99971 * 179.97438 * 8 7 6 11 11 C 1.37096 * 120.00130 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99977 * 0.02562 * 11 10 8 13 13 C 1.38955 * 120.00248 * 179.97438 * 11 10 8 14 14 N 1.31411 * 119.99876 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99984 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47362 * 90.00146 * 15 13 11 17 17 H 1.48502 * 109.47281 * 210.00539 * 15 13 11 18 18 H 1.48506 * 109.47254 * 330.00012 * 15 13 11 19 19 C 1.55156 * 103.10107 * 262.53450 * 4 2 1 20 20 C 1.55120 * 101.48753 * 324.71344 * 19 4 2 21 21 N 1.47029 * 110.01250 * 121.10003 * 2 1 3 22 22 C 1.34779 * 125.64250 * 300.51369 * 21 2 1 23 23 O 1.21282 * 120.00390 * 359.97438 * 22 21 2 24 24 C 1.50701 * 119.99353 * 180.02562 * 22 21 2 25 25 C 1.53002 * 109.47034 * 180.02562 * 24 22 21 26 26 O 1.42904 * 112.85100 * 53.79589 * 25 24 22 27 27 C 1.53784 * 113.61155 * 282.49614 * 25 24 22 28 28 C 1.53781 * 87.08197 * 220.01654 * 27 25 24 29 29 C 1.53777 * 113.61784 * 184.99614 * 25 24 22 30 30 H 1.08995 * 109.47352 * 181.01454 * 1 2 3 31 31 H 1.09006 * 109.47280 * 301.01589 * 1 2 3 32 32 H 1.08996 * 109.47356 * 61.01480 * 1 2 3 33 33 H 1.00896 * 111.00219 * 281.39679 * 6 4 2 34 34 H 1.09002 * 109.46991 * 299.99841 * 7 6 4 35 35 H 1.09000 * 109.47202 * 60.00133 * 7 6 4 36 36 H 0.97000 * 120.00083 * 0.02562 * 10 8 7 37 37 H 0.96998 * 120.00198 * 179.97438 * 14 13 11 38 38 H 1.09003 * 111.00570 * 82.66013 * 19 4 2 39 39 H 1.09001 * 110.99666 * 206.50991 * 19 4 2 40 40 H 1.08999 * 110.20884 * 277.96047 * 20 19 4 41 41 H 1.08998 * 110.51052 * 155.75416 * 20 19 4 42 42 H 1.09005 * 109.46759 * 299.99121 * 24 22 21 43 43 H 1.08991 * 109.47750 * 59.99630 * 24 22 21 44 44 H 0.96700 * 113.99989 * 309.67188 * 26 25 24 45 45 H 1.09003 * 113.61065 * 334.56349 * 27 25 24 46 46 H 1.09001 * 113.61710 * 105.46832 * 27 25 24 47 47 H 1.08995 * 113.61414 * 270.88590 * 28 27 25 48 48 H 1.08997 * 113.61459 * 139.97420 * 28 27 25 49 49 H 1.08992 * 113.61506 * 254.52728 * 29 25 24 50 50 H 1.09003 * 113.61208 * 25.43006 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7479 -1.2438 5 1 2.9624 -0.2774 -1.6221 6 7 1.0251 -0.8028 -2.2901 7 6 1.6297 -1.0067 -3.6133 8 6 0.5453 -1.0570 -4.6586 9 8 -0.6167 -0.9346 -4.3333 10 7 0.8668 -1.2371 -5.9550 11 6 -0.1197 -1.2834 -6.9059 12 1 -1.1545 -1.1752 -6.6161 13 6 0.2117 -1.4685 -8.2425 14 7 1.4708 -1.5996 -8.5951 15 14 -1.1324 -1.5309 -9.5381 16 1 -1.3912 -0.1609 -10.0494 17 1 -0.6997 -2.4039 -10.6588 18 1 -2.3751 -2.0776 -8.9363 19 6 2.3591 -2.1680 -0.6979 20 6 2.8618 -1.8473 0.7342 21 7 2.0331 -0.7136 1.1829 22 6 1.7793 -0.3851 2.4652 23 8 1.0814 0.5738 2.7189 24 6 2.3638 -1.2087 3.5837 25 6 1.9246 -0.6268 4.9289 26 8 0.5066 -0.4848 5.0356 27 6 2.7044 0.6336 5.3389 28 6 2.7027 0.0733 6.7710 29 6 2.5668 -1.3228 6.1404 30 1 -0.3634 -1.0274 0.0182 31 1 -0.3634 0.5296 0.8808 32 1 -0.3634 0.4980 -0.8989 33 1 0.3437 -1.5193 -2.0895 34 1 2.3082 -0.1826 -3.8337 35 1 2.1840 -1.9452 -3.6189 36 1 1.7961 -1.3346 -6.2152 37 1 1.7023 -1.7292 -9.5282 38 1 1.4552 -2.7764 -0.6663 39 1 3.1356 -2.6551 -1.2877 40 1 3.9134 -1.5620 0.7090 41 1 2.7179 -2.7055 1.3905 42 1 2.0111 -2.2368 3.5005 43 1 3.4516 -1.1914 3.5178 44 1 0.0998 -0.0269 4.2873 45 1 3.6982 0.6957 4.8954 46 1 2.1328 1.5554 5.2300 47 1 1.8341 0.3742 7.3566 48 1 3.6439 0.2237 7.2997 49 1 1.8843 -1.9804 6.6787 50 1 3.5230 -1.7956 5.9161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571455594.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:56 Heat of formation + Delta-G solvation = -92.688878 kcal Electronic energy + Delta-G solvation = -29827.878170 eV Core-core repulsion = 25662.782188 eV Total energy + Delta-G solvation = -4165.095982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.95867 -39.69803 -38.38314 -37.66422 -34.92358 -34.59299 -33.84780 -31.84648 -31.25742 -31.05109 -29.69400 -26.71801 -26.05278 -25.30051 -24.29605 -23.61840 -22.90745 -20.55930 -19.89769 -19.37793 -19.12607 -17.98354 -17.51372 -16.80138 -16.34116 -16.11341 -15.87621 -15.65590 -15.25720 -15.11502 -14.73375 -14.55770 -14.07472 -13.95522 -13.74413 -13.60527 -13.25897 -12.97217 -12.92006 -12.80359 -12.65161 -12.39408 -12.23708 -12.23237 -11.88633 -11.58845 -11.55545 -11.50927 -11.46495 -11.17125 -11.07093 -10.93981 -10.86020 -10.71930 -10.41867 -10.25026 -9.92263 -9.86612 -9.54327 -8.91837 -8.52593 -8.13084 -7.99791 -6.45241 -3.86064 2.31446 2.63110 3.15753 3.24748 3.30403 3.80728 3.86079 3.94381 4.03194 4.18850 4.22918 4.31502 4.33036 4.46054 4.54087 4.71190 4.81317 4.92851 4.97042 5.04022 5.07279 5.10963 5.19709 5.23622 5.28965 5.32214 5.42441 5.44240 5.53256 5.57087 5.59570 5.71281 5.77150 5.78396 5.79811 5.91494 5.92786 6.04694 6.08601 6.21556 6.33971 6.55048 7.09546 7.21486 7.51736 7.52216 7.56739 7.92281 8.02574 8.57162 9.14443 9.50235 10.01394 10.72378 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.039824 B = 0.001782 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.922328 B =15704.539506 C =16038.271830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.143 3.857 3 H 0.078 0.922 4 C 0.082 3.918 5 H 0.094 0.906 6 N -0.653 5.653 7 C 0.050 3.950 8 C 0.440 3.560 9 O -0.583 6.583 10 N -0.563 5.563 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.901 5.901 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 C -0.167 4.167 20 C 0.101 3.899 21 N -0.612 5.612 22 C 0.533 3.467 23 O -0.540 6.540 24 C -0.159 4.159 25 C 0.129 3.871 26 O -0.549 6.549 27 C -0.161 4.161 28 C -0.135 4.135 29 C -0.128 4.128 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.354 0.646 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.391 0.609 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.067 0.933 49 H 0.077 0.923 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.985 -1.825 24.672 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 H 0.096 0.904 4 C -0.030 4.030 5 H 0.112 0.888 6 N -0.285 5.285 7 C -0.082 4.082 8 C 0.225 3.775 9 O -0.467 6.467 10 N -0.199 5.199 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.207 4.207 20 C -0.023 4.023 21 N -0.346 5.346 22 C 0.323 3.677 23 O -0.419 6.419 24 C -0.200 4.200 25 C 0.086 3.914 26 O -0.361 6.361 27 C -0.199 4.199 28 C -0.172 4.172 29 C -0.166 4.166 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.175 0.825 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.246 0.754 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.924 -0.861 25.341 26.880 hybrid contribution 0.386 -0.890 -1.553 1.831 sum 9.310 -1.751 23.788 25.605 Atomic orbital electron populations 1.21940 0.93473 1.02095 1.03512 1.21542 0.96038 0.95568 0.82872 0.90392 1.22626 0.95096 0.93818 0.91451 0.88807 1.60054 1.13769 1.54959 0.99726 1.21714 0.96624 1.00604 0.89272 1.19775 0.89660 0.84567 0.83505 1.90533 1.20093 1.55178 1.80873 1.41855 1.09990 1.63132 1.04959 1.19707 0.90440 1.46550 0.86247 0.87898 1.25263 0.97192 0.97229 0.98223 1.69607 1.16446 1.49587 1.18638 0.85854 0.80506 0.78224 0.79686 1.20366 1.20938 1.19424 1.23626 1.02740 0.98977 0.95359 1.22325 0.94925 0.89065 0.95980 1.48670 1.50206 1.30437 1.05316 1.20268 0.80537 0.84680 0.82217 1.90555 1.39365 1.29243 1.82768 1.22351 1.02839 1.01089 0.93675 1.21794 0.82518 0.95659 0.91385 1.86335 1.17709 1.81389 1.50654 1.23573 1.00634 0.99036 0.96679 1.22743 1.02073 0.95961 0.96465 1.23060 1.00363 0.97448 0.95703 0.93294 0.92119 0.89314 0.82452 0.89491 0.93720 0.77477 0.91861 0.90132 0.89479 0.90992 0.90539 0.88194 0.87931 0.75436 0.89927 0.90516 0.89795 0.91420 0.90465 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.23 37.15 0.31 -1.70 16 2 C 0.14 1.64 3.47 -66.95 -0.23 1.40 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.08 0.88 3.12 -65.87 -0.21 0.67 16 5 H 0.09 0.93 7.86 -51.93 -0.41 0.53 16 6 N -0.65 -9.44 4.43 -106.04 -0.47 -9.91 16 7 C 0.05 0.81 6.04 -4.97 -0.03 0.78 16 8 C 0.44 9.94 7.82 -10.99 -0.09 9.85 16 9 O -0.58 -15.34 15.78 5.55 0.09 -15.26 16 10 N -0.56 -13.83 5.29 -10.97 -0.06 -13.89 16 11 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 12 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 13 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -24.08 13.05 55.50 0.72 -23.35 16 15 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 C -0.17 -1.38 6.68 -24.47 -0.16 -1.55 16 20 C 0.10 0.69 6.70 -2.41 -0.02 0.68 16 21 N -0.61 -5.91 3.09 -162.88 -0.50 -6.42 16 22 C 0.53 5.56 7.39 -10.98 -0.08 5.48 16 23 O -0.54 -7.19 12.51 -14.25 -0.18 -7.37 16 24 C -0.16 -1.19 4.35 -27.88 -0.12 -1.31 16 25 C 0.13 1.15 1.10 -89.81 -0.10 1.05 16 26 O -0.55 -6.42 13.39 -55.03 -0.74 -7.16 16 27 C -0.16 -1.38 7.16 -25.92 -0.19 -1.56 16 28 C -0.14 -1.00 8.02 -25.91 -0.21 -1.21 16 29 C -0.13 -0.90 7.47 -25.92 -0.19 -1.10 16 30 H 0.05 0.64 7.93 -51.93 -0.41 0.23 16 31 H 0.06 0.85 6.77 -51.93 -0.35 0.50 16 32 H 0.09 1.33 7.41 -51.93 -0.38 0.94 16 33 H 0.35 5.42 7.36 -39.29 -0.29 5.13 16 34 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.39 9.17 7.90 -40.82 -0.32 8.84 16 37 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.08 0.73 7.79 -51.93 -0.40 0.33 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.41 7.47 -51.93 -0.39 0.02 16 42 H 0.10 0.65 7.85 -51.93 -0.41 0.24 16 43 H 0.10 0.54 8.05 -51.93 -0.42 0.13 16 44 H 0.39 4.71 6.20 45.56 0.28 4.99 16 45 H 0.08 0.60 8.04 -51.93 -0.42 0.18 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.09 0.45 8.10 -51.93 -0.42 0.03 16 LS Contribution 398.54 15.07 6.01 6.01 Total: -1.00 -32.01 398.54 -9.36 -41.37 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -7.65 Total: 16.58 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -1.56 Total: 3.62 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.31 Total: -53.57 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.83 Total: -29.79 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.01 -9.36 -41.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571455594.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.315 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds