Wall clock time and date at job start Sat Apr 11 2020 05:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.87578 * 2 1 4 4 C 1.54331 * 109.88350 * 238.98205 * 2 1 3 5 5 H 1.09002 * 110.71869 * 144.07834 * 4 2 1 6 6 N 1.46902 * 110.71518 * 20.98443 * 4 2 1 7 7 C 1.46906 * 110.99573 * 157.44039 * 6 4 2 8 8 C 1.50699 * 109.46990 * 180.02562 * 7 6 4 9 9 O 1.21287 * 119.99883 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99971 * 179.97438 * 8 7 6 11 11 C 1.37096 * 120.00130 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99977 * 0.02562 * 11 10 8 13 13 C 1.38955 * 120.00248 * 179.97438 * 11 10 8 14 14 N 1.31411 * 119.99876 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99984 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47362 * 90.00146 * 15 13 11 17 17 H 1.48502 * 109.47281 * 210.00539 * 15 13 11 18 18 H 1.48506 * 109.47254 * 330.00012 * 15 13 11 19 19 C 1.55156 * 103.10107 * 262.53450 * 4 2 1 20 20 C 1.55120 * 101.48753 * 324.71344 * 19 4 2 21 21 N 1.47029 * 110.01250 * 121.10003 * 2 1 3 22 22 C 1.34779 * 125.64250 * 300.51369 * 21 2 1 23 23 O 1.21282 * 120.00390 * 359.97438 * 22 21 2 24 24 C 1.50701 * 119.99353 * 180.02562 * 22 21 2 25 25 C 1.53002 * 109.47034 * 180.02562 * 24 22 21 26 26 O 1.42904 * 112.85100 * 53.79589 * 25 24 22 27 27 C 1.53784 * 113.61155 * 282.49614 * 25 24 22 28 28 C 1.53781 * 87.08197 * 220.01654 * 27 25 24 29 29 C 1.53777 * 113.61784 * 184.99614 * 25 24 22 30 30 H 1.08995 * 109.47352 * 181.01454 * 1 2 3 31 31 H 1.09006 * 109.47280 * 301.01589 * 1 2 3 32 32 H 1.08996 * 109.47356 * 61.01480 * 1 2 3 33 33 H 1.00896 * 111.00219 * 281.39679 * 6 4 2 34 34 H 1.09002 * 109.46991 * 299.99841 * 7 6 4 35 35 H 1.09000 * 109.47202 * 60.00133 * 7 6 4 36 36 H 0.97000 * 120.00083 * 0.02562 * 10 8 7 37 37 H 0.96998 * 120.00198 * 179.97438 * 14 13 11 38 38 H 1.09003 * 111.00570 * 82.66013 * 19 4 2 39 39 H 1.09001 * 110.99666 * 206.50991 * 19 4 2 40 40 H 1.08999 * 110.20884 * 277.96047 * 20 19 4 41 41 H 1.08998 * 110.51052 * 155.75416 * 20 19 4 42 42 H 1.09005 * 109.46759 * 299.99121 * 24 22 21 43 43 H 1.08991 * 109.47750 * 59.99630 * 24 22 21 44 44 H 0.96700 * 113.99989 * 309.67188 * 26 25 24 45 45 H 1.09003 * 113.61065 * 334.56349 * 27 25 24 46 46 H 1.09001 * 113.61710 * 105.46832 * 27 25 24 47 47 H 1.08995 * 113.61414 * 270.88590 * 28 27 25 48 48 H 1.08997 * 113.61459 * 139.97420 * 28 27 25 49 49 H 1.08992 * 113.61506 * 254.52728 * 29 25 24 50 50 H 1.09003 * 113.61208 * 25.43006 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7479 -1.2438 5 1 2.9624 -0.2774 -1.6221 6 7 1.0251 -0.8028 -2.2901 7 6 1.6297 -1.0067 -3.6133 8 6 0.5453 -1.0570 -4.6586 9 8 -0.6167 -0.9346 -4.3333 10 7 0.8668 -1.2371 -5.9550 11 6 -0.1197 -1.2834 -6.9059 12 1 -1.1545 -1.1752 -6.6161 13 6 0.2117 -1.4685 -8.2425 14 7 1.4708 -1.5996 -8.5951 15 14 -1.1324 -1.5309 -9.5381 16 1 -1.3912 -0.1609 -10.0494 17 1 -0.6997 -2.4039 -10.6588 18 1 -2.3751 -2.0776 -8.9363 19 6 2.3591 -2.1680 -0.6979 20 6 2.8618 -1.8473 0.7342 21 7 2.0331 -0.7136 1.1829 22 6 1.7793 -0.3851 2.4652 23 8 1.0814 0.5738 2.7189 24 6 2.3638 -1.2087 3.5837 25 6 1.9246 -0.6268 4.9289 26 8 0.5066 -0.4848 5.0356 27 6 2.7044 0.6336 5.3389 28 6 2.7027 0.0733 6.7710 29 6 2.5668 -1.3228 6.1404 30 1 -0.3634 -1.0274 0.0182 31 1 -0.3634 0.5296 0.8808 32 1 -0.3634 0.4980 -0.8989 33 1 0.3437 -1.5193 -2.0895 34 1 2.3082 -0.1826 -3.8337 35 1 2.1840 -1.9452 -3.6189 36 1 1.7961 -1.3346 -6.2152 37 1 1.7023 -1.7292 -9.5282 38 1 1.4552 -2.7764 -0.6663 39 1 3.1356 -2.6551 -1.2877 40 1 3.9134 -1.5620 0.7090 41 1 2.7179 -2.7055 1.3905 42 1 2.0111 -2.2368 3.5005 43 1 3.4516 -1.1914 3.5178 44 1 0.0998 -0.0269 4.2873 45 1 3.6982 0.6957 4.8954 46 1 2.1328 1.5554 5.2300 47 1 1.8341 0.3742 7.3566 48 1 3.6439 0.2237 7.2997 49 1 1.8843 -1.9804 6.6787 50 1 3.5230 -1.7956 5.9161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571455594.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:55 Heat of formation + Delta-G solvation = -115.953193 kcal Electronic energy + Delta-G solvation = -29828.886987 eV Core-core repulsion = 25662.782188 eV Total energy + Delta-G solvation = -4166.104799 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.71471 -40.52299 -39.95565 -38.64769 -36.19674 -35.61733 -35.36220 -33.27948 -32.69433 -31.85869 -30.51767 -28.14681 -26.64008 -26.50943 -25.56199 -24.58497 -23.56799 -21.37635 -21.11900 -20.55394 -19.94412 -19.92326 -18.35395 -17.76870 -17.48370 -17.01561 -16.90099 -16.63921 -16.36632 -16.20725 -15.97695 -15.73729 -15.42882 -15.24083 -14.75512 -14.54735 -14.16966 -14.03488 -13.89331 -13.71326 -13.55277 -13.48796 -13.39009 -13.17520 -13.06312 -12.96652 -12.70937 -12.53193 -12.46365 -12.40736 -12.12937 -12.11960 -11.82539 -11.76953 -11.69465 -11.49919 -11.38510 -10.66655 -10.60279 -10.32710 -10.00054 -9.69734 -9.26582 -8.46182 -5.94310 1.38075 1.42246 1.54236 1.55985 1.87783 2.07606 2.29845 2.92173 3.15673 3.21575 3.31798 3.46131 3.60441 3.64963 3.72680 3.77215 3.93216 4.05299 4.13862 4.17258 4.32495 4.35768 4.40753 4.47175 4.50122 4.53462 4.62555 4.67040 4.71197 4.74943 4.78531 4.80452 4.86301 5.00951 5.05575 5.08877 5.10912 5.14483 5.31810 5.38637 5.39972 5.41968 5.46040 5.90595 6.11885 6.36509 6.47838 6.61665 6.73782 7.14179 7.14922 7.58363 8.14142 8.71001 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.039824 B = 0.001782 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.922328 B =15704.539506 C =16038.271830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.145 3.855 3 H 0.065 0.935 4 C 0.085 3.915 5 H 0.110 0.890 6 N -0.671 5.671 7 C 0.068 3.932 8 C 0.436 3.564 9 O -0.625 6.625 10 N -0.573 5.573 11 C -0.334 4.334 12 H 0.077 0.923 13 C -0.011 4.011 14 N -0.918 5.918 15 Si 0.990 3.010 16 H -0.273 1.273 17 H -0.270 1.270 18 H -0.274 1.274 19 C -0.160 4.160 20 C 0.101 3.899 21 N -0.611 5.611 22 C 0.525 3.475 23 O -0.579 6.579 24 C -0.148 4.148 25 C 0.110 3.890 26 O -0.569 6.569 27 C -0.164 4.164 28 C -0.136 4.136 29 C -0.118 4.118 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.347 0.653 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.135 0.865 44 H 0.384 0.616 45 H 0.100 0.900 46 H 0.048 0.952 47 H 0.066 0.934 48 H 0.087 0.913 49 H 0.070 0.930 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.872 -3.482 25.212 28.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.040 3.960 3 H 0.083 0.917 4 C -0.026 4.026 5 H 0.128 0.872 6 N -0.302 5.302 7 C -0.064 4.064 8 C 0.224 3.776 9 O -0.512 6.512 10 N -0.210 5.210 11 C -0.463 4.463 12 H 0.095 0.905 13 C -0.211 4.211 14 N -0.559 5.559 15 Si 0.814 3.186 16 H -0.198 1.198 17 H -0.195 1.195 18 H -0.199 1.199 19 C -0.200 4.200 20 C -0.021 4.021 21 N -0.344 5.344 22 C 0.316 3.684 23 O -0.460 6.460 24 C -0.188 4.188 25 C 0.069 3.931 26 O -0.381 6.381 27 C -0.202 4.202 28 C -0.173 4.173 29 C -0.155 4.155 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.167 0.833 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.134 0.866 43 H 0.153 0.847 44 H 0.238 0.762 45 H 0.119 0.881 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.105 0.895 49 H 0.089 0.911 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.867 -2.540 25.894 28.597 hybrid contribution -0.539 -0.321 -1.651 1.766 sum 11.328 -2.861 24.243 26.911 Atomic orbital electron populations 1.21771 0.95368 1.01265 1.01502 1.21371 0.94443 0.95638 0.84498 0.91658 1.22643 0.94290 0.95787 0.89879 0.87215 1.59978 1.15096 1.55121 1.00031 1.21551 0.94222 1.02873 0.87768 1.20967 0.90676 0.82016 0.83941 1.90505 1.22652 1.56405 1.81619 1.41915 1.09670 1.63960 1.05482 1.19641 0.90162 1.48774 0.87770 0.90519 1.25982 0.99377 0.96334 0.99433 1.69658 1.17515 1.49409 1.19355 0.84967 0.77762 0.78462 0.77384 1.19846 1.19466 1.19926 1.23583 1.03063 0.96896 0.96462 1.22574 0.95532 0.88772 0.95256 1.48707 1.50241 1.30933 1.04548 1.20915 0.80045 0.84517 0.82938 1.90549 1.41035 1.31108 1.83343 1.22357 1.04494 1.00819 0.91099 1.22158 0.81185 0.96501 0.93264 1.86314 1.19810 1.81369 1.50650 1.23609 1.01043 0.97750 0.97771 1.22734 1.02342 0.96350 0.95865 1.23119 1.01349 0.96885 0.94141 0.93489 0.93660 0.91651 0.83293 0.87606 0.90695 0.76874 0.91324 0.91142 0.87402 0.88442 0.88146 0.86605 0.84689 0.76155 0.88113 0.93300 0.91531 0.89469 0.91135 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 8.23 71.98 0.59 -3.28 16 2 C 0.14 3.21 3.47 45.34 0.16 3.37 16 3 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 4 C 0.08 1.64 3.12 46.11 0.14 1.78 16 5 H 0.11 1.82 7.86 -2.39 -0.02 1.80 16 6 N -0.67 -18.84 4.43 -489.42 -2.17 -21.01 16 7 C 0.07 2.07 6.04 85.56 0.52 2.58 16 8 C 0.44 19.87 7.82 87.66 0.69 20.56 16 9 O -0.63 -33.94 15.78 -3.05 -0.05 -33.99 16 10 N -0.57 -28.45 5.29 -307.00 -1.62 -30.08 16 11 C -0.33 -18.70 9.68 84.04 0.81 -17.89 16 12 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 13 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 14 N -0.92 -48.55 13.05 21.66 0.28 -48.27 16 15 Si 0.99 42.57 29.55 68.60 2.03 44.59 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 17 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 19 C -0.16 -2.10 6.68 32.06 0.21 -1.89 16 20 C 0.10 0.97 6.70 86.93 0.58 1.55 16 21 N -0.61 -10.55 3.09 -787.61 -2.43 -12.98 16 22 C 0.52 10.26 7.39 87.66 0.65 10.90 16 23 O -0.58 -15.83 12.51 15.90 0.20 -15.63 16 24 C -0.15 -1.77 4.35 29.85 0.13 -1.64 16 25 C 0.11 1.82 1.10 -10.27 -0.01 1.81 16 26 O -0.57 -13.67 13.39 -130.05 -1.74 -15.42 16 27 C -0.16 -2.64 7.16 31.12 0.22 -2.41 16 28 C -0.14 -1.82 8.02 31.12 0.25 -1.57 16 29 C -0.12 -1.36 7.47 31.12 0.23 -1.12 16 30 H 0.05 1.27 7.93 -2.39 -0.02 1.25 16 31 H 0.04 1.36 6.77 -2.38 -0.02 1.34 16 32 H 0.06 2.08 7.41 -2.39 -0.02 2.06 16 33 H 0.35 10.61 7.36 -89.70 -0.66 9.95 16 34 H 0.11 2.87 8.08 -2.39 -0.02 2.85 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.40 18.53 7.90 -92.71 -0.73 17.80 16 37 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 38 H 0.07 1.11 7.79 -2.39 -0.02 1.09 16 39 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.10 0.53 8.14 -2.39 -0.02 0.52 16 41 H 0.10 0.56 7.47 -2.39 -0.02 0.54 16 42 H 0.12 1.06 7.85 -2.38 -0.02 1.04 16 43 H 0.14 0.75 8.05 -2.39 -0.02 0.73 16 44 H 0.38 9.93 6.20 -74.06 -0.46 9.47 16 45 H 0.10 1.21 8.04 -2.39 -0.02 1.20 16 46 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.12 0.64 8.10 -2.39 -0.02 0.63 16 Total: -1.00 -73.52 398.54 -0.74 -74.26 By element: Atomic # 1 Polarization: 46.79 SS G_CDS: -0.88 Total: 45.91 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 5.64 Total: 12.61 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -5.94 Total: -112.33 kcal Atomic # 8 Polarization: -63.44 SS G_CDS: -1.59 Total: -65.04 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -73.52 -0.74 -74.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571455594.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.694 kcal (2) G-P(sol) polarization free energy of solvation -73.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds