Wall clock time and date at job start Sat Apr 11 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.49778 * 2 1 4 4 C 1.53035 * 109.49813 * 239.89747 * 2 1 3 5 5 C 1.53043 * 109.53686 * 178.68413 * 4 2 1 6 6 H 1.09000 * 109.49807 * 301.41478 * 5 4 2 7 7 C 1.50703 * 109.49866 * 181.35258 * 5 4 2 8 8 O 1.20829 * 119.99576 * 359.97438 * 7 5 4 9 9 O 1.34218 * 120.00259 * 180.02562 * 7 5 4 10 10 C 1.52762 * 109.38163 * 61.24231 * 5 4 2 11 11 N 1.46920 * 109.00754 * 305.58595 * 10 5 4 12 12 C 1.34777 * 120.63258 * 233.58332 * 11 10 5 13 13 O 1.21589 * 119.99881 * 354.14454 * 12 11 10 14 14 N 1.34776 * 120.00463 * 174.13848 * 12 11 10 15 15 C 1.46499 * 120.00296 * 174.57837 * 14 12 11 16 16 C 1.53043 * 109.45956 * 274.79587 * 15 14 12 17 17 C 1.53192 * 109.30798 * 178.61564 * 16 15 14 18 18 N 1.46921 * 108.78012 * 54.63498 * 17 16 15 19 19 C 1.36934 * 120.62931 * 126.36432 * 18 17 16 20 20 H 1.07999 * 120.00290 * 214.36067 * 19 18 17 21 21 C 1.38806 * 120.00203 * 34.37070 * 19 18 17 22 22 N 1.31627 * 119.99976 * 6.04967 * 21 19 18 23 23 Si 1.86800 * 120.00497 * 186.05385 * 21 19 18 24 24 H 1.48504 * 109.46933 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47722 * 119.99319 * 23 21 19 26 26 H 1.48499 * 109.47241 * 239.99812 * 23 21 19 27 27 C 1.46928 * 118.73905 * 306.39246 * 18 17 16 28 28 C 1.53046 * 109.45851 * 154.72618 * 15 14 12 29 29 C 1.46930 * 118.74098 * 53.31447 * 11 10 5 30 30 H 1.08998 * 109.47213 * 299.93448 * 1 2 3 31 31 H 1.08995 * 109.47344 * 59.93932 * 1 2 3 32 32 H 1.09003 * 109.47151 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46201 * 298.70396 * 4 2 1 34 34 H 1.08999 * 109.45725 * 58.66657 * 4 2 1 35 35 H 0.96701 * 117.00588 * 179.97438 * 9 7 5 36 36 H 1.09002 * 109.50686 * 185.70716 * 10 5 4 37 37 H 1.08992 * 109.43080 * 65.42452 * 10 5 4 38 38 H 0.97002 * 119.99727 * 354.30796 * 14 12 11 39 39 H 1.08998 * 109.45768 * 34.75864 * 15 14 12 40 40 H 1.08995 * 109.49836 * 298.56502 * 16 15 14 41 41 H 1.08998 * 109.49532 * 58.66285 * 16 15 14 42 42 H 1.09002 * 109.58434 * 294.84091 * 17 16 15 43 43 H 1.09005 * 109.58318 * 174.42770 * 17 16 15 44 44 H 0.96994 * 120.00169 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.58381 * 293.81856 * 27 18 17 46 46 H 1.08994 * 109.58548 * 173.39738 * 27 18 17 47 47 H 1.08993 * 109.49489 * 301.34106 * 28 15 14 48 48 H 1.09007 * 109.49292 * 61.43686 * 28 15 14 49 49 H 1.08999 * 109.58445 * 66.42411 * 29 11 10 50 50 H 1.08996 * 109.59080 * 186.85300 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7235 -1.2480 5 6 3.5709 -0.6955 -1.2656 6 1 3.9159 0.3384 -1.2541 7 6 4.0722 -1.3791 -2.5116 8 8 3.2866 -1.8419 -3.3044 9 8 5.3913 -1.4747 -2.7402 10 6 4.1055 -1.4216 -0.0326 11 7 3.5046 -0.8287 1.1699 12 6 4.2810 -0.3849 2.1782 13 8 5.4825 -0.5687 2.1464 14 7 3.7258 0.2629 3.2215 15 6 4.5503 0.6404 4.3722 16 6 4.6382 -0.5379 5.3448 17 6 5.5291 -0.1513 6.5296 18 7 5.0107 1.0868 7.1269 19 6 4.7272 1.1504 8.4651 20 1 3.8998 1.7505 8.8139 21 6 5.5032 0.4436 9.3734 22 7 6.5814 -0.1909 8.9641 23 14 5.0176 0.3928 11.1764 24 1 3.7751 1.1811 11.3767 25 1 4.7826 -1.0150 11.5864 26 1 6.1091 0.9725 11.9996 27 6 4.8018 2.2554 6.2611 28 6 3.9190 1.8419 5.0794 29 6 2.0412 -0.7234 1.2499 30 1 -0.3633 0.5128 0.8905 31 1 -0.3634 0.5147 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6967 -1.7577 -1.2346 34 1 1.6582 -0.2252 -2.1387 35 1 5.6649 -1.9221 -3.5526 36 1 5.1895 -1.3160 0.0106 37 1 3.8412 -2.4774 -0.0905 38 1 2.7811 0.4826 3.2088 39 1 5.5511 0.9046 4.0307 40 1 3.6404 -0.7868 5.7060 41 1 5.0663 -1.4003 4.8338 42 1 6.5496 0.0099 6.1821 43 1 5.5157 -0.9490 7.2724 44 1 7.1236 -0.6851 9.5987 45 1 5.7629 2.6129 5.8917 46 1 4.3085 3.0457 6.8268 47 1 3.8353 2.6732 4.3794 48 1 2.9279 1.5705 5.4430 49 1 1.6052 -1.7212 1.2986 50 1 1.7636 -0.1573 2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589273745.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:08 Heat of formation + Delta-G solvation = -104.634955 kcal Electronic energy + Delta-G solvation = -30641.856905 eV Core-core repulsion = 26476.242902 eV Total energy + Delta-G solvation = -4165.614003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.15222 -40.17802 -38.29440 -37.16173 -36.46461 -34.53267 -33.75411 -33.06347 -31.81722 -29.96980 -29.35588 -27.16858 -25.94108 -25.31258 -24.32369 -22.19036 -21.88720 -21.43925 -20.59874 -19.76707 -19.31162 -18.40359 -18.08545 -16.81709 -16.79830 -16.45756 -16.07713 -15.43148 -15.06551 -14.89591 -14.62966 -14.38494 -14.14973 -13.82983 -13.71559 -13.47601 -13.33618 -13.06174 -12.96099 -12.59071 -12.48689 -12.46799 -12.24997 -11.93662 -11.74372 -11.47768 -11.35688 -11.17527 -11.09629 -11.00192 -10.92804 -10.85911 -10.77220 -10.34388 -10.17475 -10.09274 -9.93749 -9.77040 -9.56084 -8.94188 -8.56911 -8.38267 -6.56702 -5.76989 -3.29106 1.75891 2.44524 2.76823 3.29124 3.36904 3.44128 3.46046 3.88395 4.14413 4.31398 4.35158 4.44555 4.48736 4.74016 4.86525 4.98164 5.09137 5.15576 5.28112 5.30219 5.35485 5.39428 5.43526 5.48570 5.52656 5.56322 5.67794 5.70022 5.73659 5.86382 5.91685 6.11228 6.12306 6.22529 6.27003 6.40536 6.47617 6.61753 6.68985 6.78933 6.88695 6.97847 7.06844 7.43945 7.50075 7.75676 7.80762 8.03436 8.51545 8.70891 9.24542 9.84393 10.44353 11.30855 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022509 B = 0.002305 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.636347 B =12142.274475 C =12810.350601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.079 0.921 4 C -0.098 4.098 5 C -0.098 4.098 6 H 0.114 0.886 7 C 0.489 3.511 8 O -0.514 6.514 9 O -0.511 6.511 10 C 0.143 3.857 11 N -0.633 5.633 12 C 0.708 3.292 13 O -0.583 6.583 14 N -0.738 5.738 15 C 0.166 3.834 16 C -0.147 4.147 17 C 0.175 3.825 18 N -0.593 5.593 19 C -0.255 4.255 20 H 0.063 0.937 21 C 0.006 3.994 22 N -0.903 5.903 23 Si 0.904 3.096 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.289 1.289 27 C 0.149 3.851 28 C -0.138 4.138 29 C 0.114 3.886 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.411 0.589 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.389 0.611 39 H 0.083 0.917 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.021 0.979 43 H 0.089 0.911 44 H 0.254 0.746 45 H 0.021 0.979 46 H 0.058 0.942 47 H 0.054 0.946 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.895 -0.612 -22.642 25.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.098 0.902 4 C -0.136 4.136 5 C -0.118 4.118 6 H 0.132 0.868 7 C 0.331 3.669 8 O -0.402 6.402 9 O -0.322 6.322 10 C 0.018 3.982 11 N -0.371 5.371 12 C 0.409 3.591 13 O -0.460 6.460 14 N -0.393 5.393 15 C 0.062 3.938 16 C -0.188 4.188 17 C 0.049 3.951 18 N -0.316 5.316 19 C -0.385 4.385 20 H 0.081 0.919 21 C -0.193 4.193 22 N -0.546 5.546 23 Si 0.734 3.266 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.216 1.216 27 C 0.022 3.978 28 C -0.178 4.178 29 C -0.010 4.010 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.270 0.730 36 H 0.127 0.873 37 H 0.087 0.913 38 H 0.225 0.775 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.039 0.961 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.194 -0.777 -22.338 24.567 hybrid contribution -0.545 -0.298 0.246 0.668 sum -10.739 -1.075 -22.093 24.588 Atomic orbital electron populations 1.21757 0.93671 1.02453 1.02426 1.21544 0.96494 1.00236 0.94367 0.90233 1.21507 0.91240 1.02401 0.98419 1.21428 0.97836 1.01906 0.90644 0.86804 1.23253 0.80013 0.76292 0.87358 1.90727 1.56918 1.45086 1.47466 1.84582 1.26076 1.73795 1.47778 1.21135 1.00481 0.95613 0.80923 1.47204 1.05834 1.65689 1.18418 1.15868 0.85005 0.78538 0.79662 1.90934 1.12738 1.62951 1.79383 1.45707 1.12966 1.61426 1.19249 1.20953 0.94455 0.95096 0.83256 1.22606 1.01552 0.96652 0.97959 1.20769 0.92445 0.90201 0.91672 1.44037 1.76506 1.06390 1.04647 1.19176 1.08838 1.28578 0.81892 0.91885 1.25287 0.95257 1.00665 0.98048 1.69965 1.15372 1.35786 1.33520 0.86199 0.77794 0.77387 0.85229 1.20243 1.21612 1.21581 1.20854 0.95657 0.90947 0.90378 1.22340 1.00660 0.96170 0.98624 1.21756 0.80049 1.01061 0.98121 0.91977 0.92079 0.92190 0.90556 0.90529 0.72996 0.87348 0.91308 0.77514 0.89906 0.92884 0.93030 0.96128 0.89259 0.93567 0.96147 0.92370 0.92723 0.92036 0.90976 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.20 37.16 0.34 -0.39 16 2 C -0.11 -0.67 2.87 -90.50 -0.26 -0.93 16 3 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.10 -0.69 3.75 -26.69 -0.10 -0.79 16 5 C -0.10 -0.79 2.76 -91.87 -0.25 -1.04 16 6 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 7 C 0.49 4.27 7.63 36.01 0.27 4.54 16 8 O -0.51 -5.72 16.74 -18.75 -0.31 -6.04 16 9 O -0.51 -3.66 13.35 -39.23 -0.52 -4.18 16 10 C 0.14 1.42 5.60 -3.94 -0.02 1.40 16 11 N -0.63 -6.96 2.98 -178.76 -0.53 -7.50 16 12 C 0.71 10.68 8.26 -86.92 -0.72 9.97 16 13 O -0.58 -11.32 15.41 5.29 0.08 -11.24 16 14 N -0.74 -10.38 4.97 -58.63 -0.29 -10.67 16 15 C 0.17 2.89 2.46 -67.89 -0.17 2.72 16 16 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 17 C 0.18 4.28 5.23 -3.71 -0.02 4.26 16 18 N -0.59 -14.75 2.98 -172.33 -0.51 -15.26 16 19 C -0.25 -6.92 9.56 -15.06 -0.14 -7.06 16 20 H 0.06 1.67 7.84 -52.49 -0.41 1.26 16 21 C 0.01 0.18 5.13 -17.43 -0.09 0.09 16 22 N -0.90 -26.29 11.02 55.49 0.61 -25.68 16 23 Si 0.90 21.55 29.56 -169.99 -5.02 16.52 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.15 3.05 6.52 -3.71 -0.02 3.02 16 28 C -0.14 -2.26 5.55 -26.61 -0.15 -2.41 16 29 C 0.11 0.88 5.72 -3.70 -0.02 0.86 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 34 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 35 H 0.41 1.19 9.10 45.56 0.41 1.60 16 36 H 0.11 1.30 7.04 -51.93 -0.37 0.93 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.39 4.32 6.11 -40.82 -0.25 4.08 16 39 H 0.08 1.65 7.50 -51.93 -0.39 1.26 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 2.44 6.19 -51.93 -0.32 2.11 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.08 0.59 5.59 -51.93 -0.29 0.30 16 LS Contribution 391.85 15.07 5.91 5.91 Total: -1.00 -34.38 391.85 -9.60 -43.98 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.50 Total: 3.02 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -1.50 Total: 11.15 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.73 Total: -59.11 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.76 Total: -21.46 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.38 -9.60 -43.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589273745.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.656 kcal (2) G-P(sol) polarization free energy of solvation -34.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds