Wall clock time and date at job start Sat Apr 11 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.49778 * 2 1 4 4 C 1.53035 * 109.49813 * 239.89747 * 2 1 3 5 5 C 1.53043 * 109.53686 * 178.68413 * 4 2 1 6 6 H 1.09000 * 109.49807 * 301.41478 * 5 4 2 7 7 C 1.50703 * 109.49866 * 181.35258 * 5 4 2 8 8 O 1.20829 * 119.99576 * 359.97438 * 7 5 4 9 9 O 1.34218 * 120.00259 * 180.02562 * 7 5 4 10 10 C 1.52762 * 109.38163 * 61.24231 * 5 4 2 11 11 N 1.46920 * 109.00754 * 305.58595 * 10 5 4 12 12 C 1.34777 * 120.63258 * 233.58332 * 11 10 5 13 13 O 1.21589 * 119.99881 * 354.14454 * 12 11 10 14 14 N 1.34776 * 120.00463 * 174.13848 * 12 11 10 15 15 C 1.46499 * 120.00296 * 174.57837 * 14 12 11 16 16 C 1.53043 * 109.45956 * 274.79587 * 15 14 12 17 17 C 1.53192 * 109.30798 * 178.61564 * 16 15 14 18 18 N 1.46921 * 108.78012 * 54.63498 * 17 16 15 19 19 C 1.36934 * 120.62931 * 126.36432 * 18 17 16 20 20 H 1.07999 * 120.00290 * 214.36067 * 19 18 17 21 21 C 1.38806 * 120.00203 * 34.37070 * 19 18 17 22 22 N 1.31627 * 119.99976 * 6.04967 * 21 19 18 23 23 Si 1.86800 * 120.00497 * 186.05385 * 21 19 18 24 24 H 1.48504 * 109.46933 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47722 * 119.99319 * 23 21 19 26 26 H 1.48499 * 109.47241 * 239.99812 * 23 21 19 27 27 C 1.46928 * 118.73905 * 306.39246 * 18 17 16 28 28 C 1.53046 * 109.45851 * 154.72618 * 15 14 12 29 29 C 1.46930 * 118.74098 * 53.31447 * 11 10 5 30 30 H 1.08998 * 109.47213 * 299.93448 * 1 2 3 31 31 H 1.08995 * 109.47344 * 59.93932 * 1 2 3 32 32 H 1.09003 * 109.47151 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46201 * 298.70396 * 4 2 1 34 34 H 1.08999 * 109.45725 * 58.66657 * 4 2 1 35 35 H 0.96701 * 117.00588 * 179.97438 * 9 7 5 36 36 H 1.09002 * 109.50686 * 185.70716 * 10 5 4 37 37 H 1.08992 * 109.43080 * 65.42452 * 10 5 4 38 38 H 0.97002 * 119.99727 * 354.30796 * 14 12 11 39 39 H 1.08998 * 109.45768 * 34.75864 * 15 14 12 40 40 H 1.08995 * 109.49836 * 298.56502 * 16 15 14 41 41 H 1.08998 * 109.49532 * 58.66285 * 16 15 14 42 42 H 1.09002 * 109.58434 * 294.84091 * 17 16 15 43 43 H 1.09005 * 109.58318 * 174.42770 * 17 16 15 44 44 H 0.96994 * 120.00169 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.58381 * 293.81856 * 27 18 17 46 46 H 1.08994 * 109.58548 * 173.39738 * 27 18 17 47 47 H 1.08993 * 109.49489 * 301.34106 * 28 15 14 48 48 H 1.09007 * 109.49292 * 61.43686 * 28 15 14 49 49 H 1.08999 * 109.58445 * 66.42411 * 29 11 10 50 50 H 1.08996 * 109.59080 * 186.85300 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7235 -1.2480 5 6 3.5709 -0.6955 -1.2656 6 1 3.9159 0.3384 -1.2541 7 6 4.0722 -1.3791 -2.5116 8 8 3.2866 -1.8419 -3.3044 9 8 5.3913 -1.4747 -2.7402 10 6 4.1055 -1.4216 -0.0326 11 7 3.5046 -0.8287 1.1699 12 6 4.2810 -0.3849 2.1782 13 8 5.4825 -0.5687 2.1464 14 7 3.7258 0.2629 3.2215 15 6 4.5503 0.6404 4.3722 16 6 4.6382 -0.5379 5.3448 17 6 5.5291 -0.1513 6.5296 18 7 5.0107 1.0868 7.1269 19 6 4.7272 1.1504 8.4651 20 1 3.8998 1.7505 8.8139 21 6 5.5032 0.4436 9.3734 22 7 6.5814 -0.1909 8.9641 23 14 5.0176 0.3928 11.1764 24 1 3.7751 1.1811 11.3767 25 1 4.7826 -1.0150 11.5864 26 1 6.1091 0.9725 11.9996 27 6 4.8018 2.2554 6.2611 28 6 3.9190 1.8419 5.0794 29 6 2.0412 -0.7234 1.2499 30 1 -0.3633 0.5128 0.8905 31 1 -0.3634 0.5147 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6967 -1.7577 -1.2346 34 1 1.6582 -0.2252 -2.1387 35 1 5.6649 -1.9221 -3.5526 36 1 5.1895 -1.3160 0.0106 37 1 3.8412 -2.4774 -0.0905 38 1 2.7811 0.4826 3.2088 39 1 5.5511 0.9046 4.0307 40 1 3.6404 -0.7868 5.7060 41 1 5.0663 -1.4003 4.8338 42 1 6.5496 0.0099 6.1821 43 1 5.5157 -0.9490 7.2724 44 1 7.1236 -0.6851 9.5987 45 1 5.7629 2.6129 5.8917 46 1 4.3085 3.0457 6.8268 47 1 3.8353 2.6732 4.3794 48 1 2.9279 1.5705 5.4430 49 1 1.6052 -1.7212 1.2986 50 1 1.7636 -0.1573 2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589273745.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:07 Heat of formation + Delta-G solvation = -127.827500 kcal Electronic energy + Delta-G solvation = -30642.862610 eV Core-core repulsion = 26476.242902 eV Total energy + Delta-G solvation = -4166.619707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.96736 -41.14744 -39.44830 -38.46612 -37.16018 -36.06357 -34.63813 -34.14125 -33.27391 -31.66519 -31.02158 -27.73912 -27.16607 -26.40788 -25.49924 -23.85802 -23.48548 -22.03785 -21.47477 -21.12236 -20.49600 -19.28664 -19.05040 -18.56327 -17.63887 -17.46340 -16.89516 -16.82515 -16.38966 -15.92516 -15.74290 -15.37266 -15.30972 -15.24257 -14.99570 -14.74310 -14.54790 -14.31481 -14.04931 -13.92971 -13.61189 -13.19411 -13.06828 -12.99539 -12.89071 -12.69544 -12.58913 -12.56653 -12.35169 -12.10014 -12.01567 -11.90794 -11.82239 -11.80452 -11.68089 -11.56405 -11.52802 -11.36178 -11.11087 -10.58485 -10.13699 -9.55289 -8.59063 -7.84860 -5.40605 1.04387 1.48174 1.49256 1.54666 1.60128 2.04729 2.16212 2.51913 2.89423 3.32874 3.50500 3.67016 3.70412 3.75859 3.84895 3.91092 4.07614 4.13230 4.31968 4.38020 4.42089 4.44730 4.51668 4.60548 4.66462 4.70906 4.72906 4.82182 4.84245 4.88159 4.93844 5.07401 5.08321 5.11261 5.16145 5.17847 5.32441 5.35967 5.39730 5.49617 5.51507 5.56577 5.62106 5.66824 5.74226 5.90737 6.45052 6.93902 6.96821 7.17638 7.56183 7.85486 8.41003 9.21445 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022509 B = 0.002305 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.636347 B =12142.274475 C =12810.350601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.081 0.919 4 C -0.094 4.094 5 C -0.091 4.091 6 H 0.118 0.882 7 C 0.495 3.505 8 O -0.539 6.539 9 O -0.513 6.513 10 C 0.143 3.857 11 N -0.624 5.624 12 C 0.704 3.296 13 O -0.632 6.632 14 N -0.724 5.724 15 C 0.179 3.821 16 C -0.130 4.130 17 C 0.185 3.815 18 N -0.610 5.610 19 C -0.260 4.260 20 H 0.072 0.928 21 C -0.052 4.052 22 N -0.940 5.940 23 Si 0.971 3.029 24 H -0.261 1.261 25 H -0.292 1.292 26 H -0.293 1.293 27 C 0.142 3.858 28 C -0.120 4.120 29 C 0.107 3.893 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.429 0.571 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.408 0.592 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.041 0.959 42 H -0.013 1.013 43 H 0.054 0.946 44 H 0.249 0.751 45 H 0.011 0.989 46 H 0.068 0.932 47 H 0.090 0.910 48 H 0.076 0.924 49 H 0.084 0.916 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.905 0.414 -23.622 27.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.099 0.901 4 C -0.132 4.132 5 C -0.111 4.111 6 H 0.136 0.864 7 C 0.338 3.662 8 O -0.429 6.429 9 O -0.327 6.327 10 C 0.019 3.981 11 N -0.361 5.361 12 C 0.405 3.595 13 O -0.513 6.513 14 N -0.380 5.380 15 C 0.074 3.926 16 C -0.170 4.170 17 C 0.059 3.941 18 N -0.334 5.334 19 C -0.391 4.391 20 H 0.090 0.910 21 C -0.247 4.247 22 N -0.586 5.586 23 Si 0.799 3.201 24 H -0.185 1.185 25 H -0.219 1.219 26 H -0.221 1.221 27 C 0.016 3.984 28 C -0.159 4.159 29 C -0.015 4.015 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.291 0.709 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.248 0.752 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.005 0.995 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.029 0.971 46 H 0.087 0.913 47 H 0.109 0.891 48 H 0.094 0.906 49 H 0.102 0.898 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.277 0.268 -23.378 26.887 hybrid contribution 0.442 -0.627 0.459 0.894 sum -12.835 -0.359 -22.920 26.271 Atomic orbital electron populations 1.21737 0.92289 1.02872 1.03079 1.21476 0.97433 0.99820 0.92963 0.90080 1.21499 0.90150 1.02480 0.99036 1.21372 0.98676 1.01684 0.89365 0.86390 1.23284 0.80149 0.75630 0.87124 1.90720 1.57566 1.46235 1.48374 1.84556 1.25309 1.73792 1.49037 1.21134 0.99282 0.96361 0.81365 1.47190 1.07076 1.64352 1.17470 1.16035 0.84611 0.78452 0.80384 1.90910 1.15199 1.64710 1.80519 1.45278 1.13518 1.61258 1.17990 1.20535 0.94119 0.94334 0.83656 1.22337 1.00516 0.97480 0.96712 1.20447 0.91920 0.89539 0.92235 1.44279 1.76541 1.07763 1.04796 1.19567 1.08677 1.27781 0.83040 0.91009 1.26096 0.95440 1.00931 1.02263 1.70157 1.16772 1.37044 1.34587 0.85144 0.77766 0.77118 0.80045 1.18464 1.21921 1.22054 1.21049 0.96219 0.89805 0.91323 1.22130 0.99841 0.96611 0.97357 1.22056 0.77643 1.02292 0.99479 0.91164 0.91632 0.91919 0.90774 0.90182 0.70895 0.89674 0.90479 0.75247 0.92636 0.92028 0.94033 0.99475 0.92742 0.94183 0.97136 0.91314 0.89136 0.90570 0.89828 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.20 71.98 0.66 -0.28 16 2 C -0.10 -0.93 2.87 -10.72 -0.03 -0.96 16 3 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.09 -1.11 3.75 30.62 0.11 -0.99 16 5 C -0.09 -1.33 2.76 -11.60 -0.03 -1.36 16 6 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 7 C 0.50 8.09 7.63 71.24 0.54 8.63 16 8 O -0.54 -11.37 16.74 21.96 0.37 -11.00 16 9 O -0.51 -6.87 13.35 -51.30 -0.69 -7.55 16 10 C 0.14 2.72 5.60 86.22 0.48 3.20 16 11 N -0.62 -12.72 2.98 -837.75 -2.49 -15.22 16 12 C 0.70 20.59 8.26 179.05 1.48 22.07 16 13 O -0.63 -25.01 15.41 -4.00 -0.06 -25.07 16 14 N -0.72 -18.86 4.97 -457.67 -2.27 -21.13 16 15 C 0.18 6.05 2.46 45.02 0.11 6.16 16 16 C -0.13 -5.23 5.65 30.67 0.17 -5.06 16 17 C 0.19 9.39 5.23 86.36 0.45 9.85 16 18 N -0.61 -30.58 2.98 -699.12 -2.08 -32.66 16 19 C -0.26 -14.11 9.56 84.03 0.80 -13.31 16 20 H 0.07 3.71 7.84 -2.91 -0.02 3.69 16 21 C -0.05 -2.92 5.13 84.86 0.44 -2.49 16 22 N -0.94 -56.76 11.02 21.65 0.24 -56.52 16 23 Si 0.97 44.67 29.56 68.60 2.03 46.70 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 27 C 0.14 5.65 6.52 86.36 0.56 6.22 16 28 C -0.12 -3.60 5.55 30.67 0.17 -3.43 16 29 C 0.11 1.34 5.72 86.36 0.49 1.84 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.07 0.94 8.13 -2.39 -0.02 0.92 16 34 H 0.08 0.94 8.07 -2.39 -0.02 0.92 16 35 H 0.43 1.99 9.10 -74.06 -0.67 1.32 16 36 H 0.08 2.07 7.04 -2.39 -0.02 2.05 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.41 7.59 6.11 -92.71 -0.57 7.02 16 39 H 0.06 2.23 7.50 -2.39 -0.02 2.21 16 40 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 42 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H 0.05 3.12 6.19 -2.38 -0.01 3.11 16 44 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 45 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.07 2.57 7.93 -2.39 -0.02 2.55 16 47 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 49 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.09 0.97 5.59 -2.39 -0.01 0.96 16 Total: -1.00 -77.30 391.85 1.17 -76.13 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -0.29 Total: 16.24 kcal Atomic # 6 Polarization: 23.66 SS G_CDS: 6.42 Total: 30.08 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -6.61 Total: -125.53 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -0.38 Total: -43.62 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -77.30 1.17 -76.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589273745.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.702 kcal (2) G-P(sol) polarization free energy of solvation -77.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds