Wall clock time and date at job start Sat Apr 11 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.46163 * 2 1 4 4 C 1.53044 * 109.46259 * 119.97720 * 2 1 3 5 5 C 1.53187 * 109.34129 * 181.35541 * 4 2 1 6 6 N 1.46933 * 108.76996 * 305.41062 * 5 4 2 7 7 C 1.34781 * 120.60646 * 233.53236 * 6 5 4 8 8 O 1.21590 * 119.99819 * 174.26327 * 7 6 5 9 9 N 1.34776 * 119.99728 * 354.26908 * 7 6 5 10 10 C 1.46500 * 119.99700 * 184.91820 * 9 7 6 11 11 C 1.53035 * 109.46246 * 275.06789 * 10 9 7 12 12 C 1.53193 * 109.31497 * 178.61747 * 11 10 9 13 13 N 1.46919 * 108.77588 * 54.63240 * 12 11 10 14 14 C 1.36937 * 120.63436 * 126.37301 * 13 12 11 15 15 H 1.07997 * 120.00396 * 215.71411 * 14 13 12 16 16 C 1.38817 * 119.99851 * 35.70376 * 14 13 12 17 17 N 1.31627 * 119.99735 * 356.39009 * 16 14 13 18 18 Si 1.86799 * 120.00212 * 176.38687 * 16 14 13 19 19 H 1.48490 * 109.47079 * 60.00152 * 18 16 14 20 20 H 1.48505 * 109.47121 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47002 * 300.00228 * 18 16 14 22 22 C 1.46928 * 118.73986 * 306.39391 * 13 12 11 23 23 C 1.53041 * 109.45996 * 154.99421 * 10 9 7 24 24 C 1.46928 * 118.76293 * 53.55783 * 6 5 4 25 25 C 1.53043 * 109.44812 * 240.03375 * 2 1 3 26 26 H 1.09000 * 109.50204 * 298.61068 * 25 2 1 27 27 C 1.50706 * 109.49144 * 58.67308 * 25 2 1 28 28 O 1.20817 * 120.00218 * 359.97438 * 27 25 2 29 29 O 1.34231 * 119.99531 * 180.02562 * 27 25 2 30 30 H 1.09006 * 109.46978 * 300.02334 * 1 2 3 31 31 H 1.08994 * 109.47671 * 60.02252 * 1 2 3 32 32 H 1.08997 * 109.47626 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.49577 * 301.32627 * 4 2 1 34 34 H 1.09002 * 109.49379 * 61.38522 * 4 2 1 35 35 H 1.08994 * 109.58874 * 65.16772 * 5 4 2 36 36 H 1.08997 * 109.58621 * 185.59722 * 5 4 2 37 37 H 0.96993 * 120.00018 * 4.91454 * 9 7 6 38 38 H 1.09002 * 109.46089 * 35.02796 * 10 9 7 39 39 H 1.08999 * 109.49413 * 298.56482 * 11 10 9 40 40 H 1.08996 * 109.50016 * 58.66079 * 11 10 9 41 41 H 1.09006 * 109.58137 * 294.84089 * 12 11 10 42 42 H 1.09002 * 109.58528 * 174.42027 * 12 11 10 43 43 H 0.97001 * 119.99578 * 179.97438 * 17 16 14 44 44 H 1.09003 * 109.58754 * 293.82163 * 22 13 12 45 45 H 1.08999 * 109.70442 * 173.46604 * 22 13 12 46 46 H 1.08994 * 109.50255 * 301.34240 * 23 10 9 47 47 H 1.09003 * 109.49442 * 61.40224 * 23 10 9 48 48 H 1.09005 * 109.58554 * 186.62183 * 24 6 5 49 49 H 1.09007 * 109.58662 * 66.19809 * 24 6 5 50 50 H 0.96698 * 117.00074 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 1.2500 5 6 3.5714 -0.6898 1.2643 6 7 4.0675 -1.2494 -0.0004 7 6 4.9619 -2.2577 -0.0006 8 8 5.2864 -2.7823 -1.0485 9 7 5.4964 -2.6845 1.1606 10 6 6.5470 -3.7055 1.1518 11 6 5.9074 -5.0949 1.1033 12 6 7.0090 -6.1586 1.0594 13 7 7.9134 -5.9501 2.1983 14 6 8.1921 -6.9735 3.0644 15 1 8.3293 -6.7688 4.1159 16 6 8.2982 -8.2741 2.5909 17 7 8.0611 -8.5340 1.3225 18 14 8.7776 -9.6552 3.7536 19 1 7.7770 -9.7519 4.8464 20 1 8.8214 -10.9382 3.0069 21 1 10.1162 -9.3735 4.3315 22 6 8.5128 -4.6225 2.3906 23 6 7.3944 -3.5761 2.4196 24 6 3.5710 -0.6889 -1.2646 25 6 2.0395 -0.7208 -1.2502 26 1 1.6967 -1.7555 -1.2388 27 6 1.5104 -0.0292 -2.4802 28 8 0.7984 0.9405 -2.3688 29 8 1.8295 -0.4912 -3.6994 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5134 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.6574 -0.2210 2.1398 34 1 1.6971 -1.7556 1.2384 35 1 3.9150 0.3393 1.3678 36 1 3.9411 -1.2863 2.0983 37 1 5.1856 -2.3157 2.0021 38 1 7.1808 -3.5669 0.2758 39 1 5.2932 -5.2438 1.9914 40 1 5.2854 -5.1782 0.2121 41 1 7.5675 -6.0679 0.1277 42 1 6.5619 -7.1506 1.1246 43 1 8.1356 -9.4428 0.9916 44 1 9.1940 -4.4064 1.5676 45 1 9.0596 -4.5992 3.3332 46 1 7.8308 -2.5783 2.4653 47 1 6.7661 -3.7387 3.2953 48 1 3.9411 -1.2849 -2.0989 49 1 3.9141 0.3406 -1.3676 50 1 1.4667 -0.0143 -4.4584 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603417108.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:20 Heat of formation + Delta-G solvation = -98.110035 kcal Electronic energy + Delta-G solvation = -30725.347778 eV Core-core repulsion = 26560.016716 eV Total energy + Delta-G solvation = -4165.331061 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.23855 -40.14826 -38.23089 -37.16493 -36.43356 -34.49578 -33.99859 -32.31646 -31.62816 -29.96020 -29.45406 -28.47159 -25.48056 -24.61279 -23.67611 -22.44385 -22.14301 -21.81572 -20.42841 -19.76832 -19.27001 -18.43609 -18.07419 -16.93149 -16.74121 -16.45106 -15.91866 -15.32325 -14.93520 -14.90632 -14.45787 -14.34228 -14.10113 -13.81539 -13.70613 -13.55576 -13.43604 -13.13203 -12.92996 -12.57130 -12.46988 -12.25787 -12.20294 -11.95090 -11.75973 -11.48003 -11.36943 -11.25618 -10.94645 -10.87665 -10.86961 -10.78217 -10.51549 -10.31607 -10.18618 -10.07358 -9.91945 -9.77449 -9.56385 -8.92321 -8.53437 -8.35715 -6.53580 -5.76162 -3.30225 1.78052 2.47401 2.79888 3.30837 3.38623 3.44213 3.44730 3.91088 4.11097 4.33168 4.41657 4.49044 4.56473 4.77930 4.95053 5.01638 5.08360 5.23756 5.29122 5.36869 5.40694 5.41040 5.43070 5.51655 5.54988 5.60010 5.68531 5.71437 5.87482 5.90969 5.95582 6.13759 6.23371 6.27364 6.28995 6.42747 6.52014 6.64285 6.70389 6.81861 6.92823 6.99187 7.09127 7.50139 7.54184 7.79319 7.86716 8.05132 8.55284 8.72754 9.26647 9.85275 10.45454 11.29845 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023071 B = 0.002255 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.372537 B =12415.276584 C =12662.503585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.073 4.073 3 H 0.081 0.919 4 C -0.130 4.130 5 C 0.109 3.891 6 N -0.634 5.634 7 C 0.707 3.293 8 O -0.582 6.582 9 N -0.738 5.738 10 C 0.168 3.832 11 C -0.147 4.147 12 C 0.170 3.830 13 N -0.594 5.594 14 C -0.257 4.257 15 H 0.063 0.937 16 C 0.009 3.991 17 N -0.902 5.902 18 Si 0.904 3.096 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.149 3.851 23 C -0.139 4.139 24 C 0.143 3.857 25 C -0.094 4.094 26 H 0.115 0.885 27 C 0.489 3.511 28 O -0.510 6.510 29 O -0.511 6.511 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.389 0.611 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.018 0.982 42 H 0.100 0.900 43 H 0.256 0.744 44 H 0.020 0.980 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.061 0.939 48 H 0.109 0.891 49 H 0.068 0.932 50 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.024 20.115 -2.782 24.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.092 4.092 3 H 0.100 0.900 4 C -0.168 4.168 5 C -0.014 4.014 6 N -0.372 5.372 7 C 0.408 3.592 8 O -0.459 6.459 9 N -0.393 5.393 10 C 0.064 3.936 11 C -0.188 4.188 12 C 0.044 3.956 13 N -0.317 5.317 14 C -0.386 4.386 15 H 0.080 0.920 16 C -0.190 4.190 17 N -0.546 5.546 18 Si 0.733 3.267 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.022 3.978 23 C -0.179 4.179 24 C 0.019 3.981 25 C -0.114 4.114 26 H 0.133 0.867 27 C 0.331 3.669 28 O -0.398 6.398 29 O -0.322 6.322 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.225 0.775 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.118 0.882 43 H 0.066 0.934 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.127 0.873 49 H 0.086 0.914 50 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -13.738 19.571 -3.269 24.134 hybrid contribution -0.329 -0.210 0.513 0.645 sum -14.067 19.361 -2.756 24.090 Atomic orbital electron populations 1.22123 0.94157 1.02008 1.03700 1.20986 0.96755 0.99492 0.91940 0.90048 1.22024 0.95055 1.01880 0.97868 1.21670 0.94215 0.99397 0.86161 1.47221 1.46133 1.37529 1.06364 1.15882 0.79131 0.79367 0.84816 1.90938 1.65015 1.59077 1.30890 1.45719 1.42379 1.44660 1.06573 1.20943 0.87058 0.86625 0.98958 1.22611 1.00416 0.95391 1.00375 1.20937 0.88515 0.97272 0.88837 1.44034 1.50576 1.06528 1.30574 1.19083 1.43626 0.86661 0.89269 0.91968 1.25352 0.99418 0.98556 0.95633 1.69899 1.51888 1.19582 1.13255 0.86364 0.78838 0.81429 0.80046 1.20971 1.21586 1.20853 1.20850 0.92194 0.85804 0.98966 1.22349 0.99237 0.99600 0.96674 1.21235 0.89479 0.99562 0.87858 1.21570 0.98059 1.01904 0.89855 0.86717 1.23279 0.77185 0.81762 0.84669 1.90652 1.35478 1.26622 1.87023 1.84599 1.71274 1.59537 1.16799 0.92378 0.90046 0.93037 0.89839 0.90874 0.91157 0.89927 0.77550 0.90217 0.93049 0.92813 0.96431 0.88211 0.93406 0.96204 0.92395 0.92778 0.92044 0.87281 0.91388 0.73081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 8.85 37.15 0.33 -0.90 16 2 C -0.07 -0.54 1.87 -90.58 -0.17 -0.71 16 3 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 4 C -0.13 -0.86 5.36 -26.61 -0.14 -1.00 16 5 C 0.11 0.82 6.38 -3.71 -0.02 0.80 16 6 N -0.63 -6.95 2.97 -178.49 -0.53 -7.49 16 7 C 0.71 10.72 8.25 -86.92 -0.72 10.00 16 8 O -0.58 -11.36 15.42 5.29 0.08 -11.28 16 9 N -0.74 -10.47 4.99 -58.64 -0.29 -10.77 16 10 C 0.17 2.95 2.38 -67.89 -0.16 2.79 16 11 C -0.15 -2.99 5.65 -26.61 -0.15 -3.14 16 12 C 0.17 4.20 5.25 -3.71 -0.02 4.18 16 13 N -0.59 -14.85 3.00 -172.32 -0.52 -15.36 16 14 C -0.26 -6.98 9.55 -15.06 -0.14 -7.12 16 15 H 0.06 1.65 7.83 -52.49 -0.41 1.23 16 16 C 0.01 0.26 5.31 -17.43 -0.09 0.17 16 17 N -0.90 -26.19 10.66 55.49 0.59 -25.60 16 18 Si 0.90 21.53 29.56 -169.99 -5.02 16.51 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.15 3.06 6.51 -3.71 -0.02 3.04 16 23 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 24 C 0.14 1.43 5.66 -3.71 -0.02 1.41 16 25 C -0.09 -0.80 2.33 -91.65 -0.21 -1.01 16 26 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 27 C 0.49 4.31 7.33 36.01 0.26 4.57 16 28 O -0.51 -5.42 14.33 -18.74 -0.27 -5.68 16 29 O -0.51 -3.77 13.36 -39.26 -0.52 -4.30 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.75 5.40 -51.93 -0.28 0.47 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.57 5.66 -51.93 -0.29 0.27 16 37 H 0.39 4.36 6.10 -40.82 -0.25 4.11 16 38 H 0.08 1.59 7.65 -51.93 -0.40 1.19 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.12 8.09 -51.93 -0.42 0.70 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 2.76 5.96 -51.93 -0.31 2.45 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.11 1.32 7.00 -51.93 -0.36 0.96 16 49 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 50 H 0.41 1.24 9.10 45.56 0.41 1.65 16 LS Contribution 386.72 15.07 5.83 5.83 Total: -1.00 -33.93 386.72 -9.44 -43.37 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.35 Total: 4.16 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -1.43 Total: 10.61 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.75 Total: -59.22 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.71 Total: -21.26 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.93 -9.44 -43.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603417108.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.735 kcal (2) G-P(sol) polarization free energy of solvation -33.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds