Wall clock time and date at job start Sat Apr 11 2020 05:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46375 * 2 1 4 4 C 1.53047 * 109.46242 * 119.97847 * 2 1 3 5 5 C 1.53187 * 109.31217 * 58.65081 * 4 2 1 6 6 N 1.46923 * 108.77416 * 54.64057 * 5 4 2 7 7 C 1.34779 * 120.63103 * 126.36632 * 6 5 4 8 8 O 1.21586 * 120.00029 * 184.04649 * 7 6 5 9 9 N 1.34773 * 120.00034 * 4.05302 * 7 6 5 10 10 C 1.46502 * 120.00087 * 174.87890 * 9 7 6 11 11 C 1.53046 * 109.45951 * 154.99823 * 10 9 7 12 12 C 1.53188 * 109.31083 * 181.38473 * 11 10 9 13 13 N 1.46923 * 108.78164 * 305.36701 * 12 11 10 14 14 C 1.36930 * 120.63072 * 233.58955 * 13 12 11 15 15 H 1.07999 * 120.00332 * 36.81560 * 14 13 12 16 16 C 1.38814 * 119.99937 * 216.81337 * 14 13 12 17 17 N 1.31619 * 119.99850 * 22.93299 * 16 14 13 18 18 Si 1.86801 * 120.00415 * 202.65826 * 16 14 13 19 19 H 1.48503 * 109.46789 * 59.99561 * 18 16 14 20 20 H 1.48502 * 109.47292 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46872 * 299.99986 * 18 16 14 22 22 C 1.46925 * 118.73398 * 53.85858 * 13 12 11 23 23 C 1.53032 * 109.46208 * 275.06879 * 10 9 7 24 24 C 1.46928 * 118.73942 * 306.63870 * 6 5 4 25 25 C 1.52765 * 109.00651 * 53.31099 * 24 6 5 26 26 H 1.08994 * 109.35782 * 65.50101 * 25 24 6 27 27 C 1.50700 * 109.58850 * 185.53760 * 25 24 6 28 28 O 1.20822 * 119.99761 * 119.98164 * 27 25 24 29 29 O 1.34231 * 119.99834 * 299.98112 * 27 25 24 30 30 H 1.09002 * 109.46627 * 300.02337 * 1 2 3 31 31 H 1.08998 * 109.46968 * 60.02056 * 1 2 3 32 32 H 1.09004 * 109.46878 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.49110 * 298.70001 * 4 2 1 34 34 H 1.08993 * 109.49891 * 178.60662 * 4 2 1 35 35 H 1.08998 * 109.59120 * 294.84890 * 5 4 2 36 36 H 1.09000 * 109.70197 * 174.49358 * 5 4 2 37 37 H 0.96998 * 120.00074 * 354.88131 * 9 7 6 38 38 H 1.09001 * 109.45551 * 35.03014 * 10 9 7 39 39 H 1.09003 * 109.49651 * 61.43302 * 11 10 9 40 40 H 1.08997 * 109.49552 * 301.34162 * 11 10 9 41 41 H 1.09001 * 109.58541 * 185.57273 * 12 11 10 42 42 H 1.09005 * 109.70440 * 65.22525 * 12 11 10 43 43 H 0.97006 * 120.00525 * 6.26422 * 17 16 14 44 44 H 1.08995 * 109.59354 * 65.93106 * 22 13 12 45 45 H 1.09007 * 109.58567 * 186.35935 * 22 13 12 46 46 H 1.09005 * 109.49767 * 298.56147 * 23 10 9 47 47 H 1.08996 * 109.50236 * 58.65801 * 23 10 9 48 48 H 1.08994 * 109.58951 * 173.14564 * 24 6 5 49 49 H 1.09001 * 109.58855 * 293.57134 * 24 6 5 50 50 H 0.96705 * 116.99574 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 1.2500 5 6 1.4996 -2.1544 1.2639 6 7 1.8625 -2.8089 -0.0005 7 6 2.5164 -3.9874 -0.0007 8 8 2.8762 -4.4828 -1.0511 9 7 2.7714 -4.6168 1.1635 10 6 3.3812 -5.9489 1.1578 11 6 4.1192 -6.1774 2.4789 12 6 4.7843 -7.5572 2.4555 13 7 3.7635 -8.5693 2.1517 14 6 3.5887 -9.6519 2.9717 15 1 3.6927 -9.5418 4.0410 16 6 3.2779 -10.8910 2.4285 17 7 3.5824 -11.1553 1.1755 18 14 2.4345 -12.1859 3.4778 19 1 1.1276 -11.6642 3.9523 20 1 2.2146 -13.4120 2.6692 21 1 3.2914 -12.5112 4.6462 22 6 2.9379 -8.4006 0.9481 23 6 2.2897 -7.0085 0.9914 24 6 1.5045 -2.1512 -1.2646 25 6 2.0399 -0.7205 -1.2502 26 1 3.1295 -0.7426 -1.2385 27 6 1.5647 0.0091 -2.4802 28 8 0.8877 1.0036 -2.3689 29 8 1.8938 -0.4458 -3.6995 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5135 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6958 -0.1938 2.1398 34 1 3.1296 -0.7431 1.2382 35 1 0.4147 -2.1350 1.3670 36 1 1.9361 -2.7036 2.0981 37 1 2.5513 -4.1878 2.0051 38 1 4.0869 -6.0216 0.3303 39 1 3.4097 -6.1294 3.3050 40 1 4.8809 -5.4084 2.6078 41 1 5.2274 -7.7658 3.4293 42 1 5.5594 -7.5786 1.6894 43 1 4.1037 -10.5210 0.6588 44 1 3.5640 -8.4876 0.0602 45 1 2.1620 -9.1660 0.9271 46 1 1.5974 -6.9528 1.8315 47 1 1.7491 -6.8311 0.0617 48 1 1.9464 -2.6968 -2.0983 49 1 0.4200 -2.1315 -1.3719 50 1 1.5661 0.0559 -4.4584 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603417110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:25 Heat of formation + Delta-G solvation = -125.267814 kcal Electronic energy + Delta-G solvation = -30877.479993 eV Core-core repulsion = 26710.971282 eV Total energy + Delta-G solvation = -4166.508711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.16468 -41.19922 -39.60794 -38.64562 -37.17274 -36.22693 -34.86596 -33.79621 -32.63041 -31.81762 -30.93614 -28.87994 -26.99229 -25.76008 -25.52314 -24.04616 -23.57699 -23.00078 -21.36256 -21.14125 -19.89996 -19.36005 -19.14232 -18.75338 -17.66556 -17.58068 -16.98151 -16.49778 -16.34354 -15.99812 -15.85172 -15.52345 -15.48933 -15.34653 -15.17290 -14.92630 -14.65992 -14.44315 -14.26988 -14.00380 -13.67353 -13.45257 -13.08714 -12.99211 -12.70772 -12.63587 -12.57292 -12.46533 -12.36557 -12.09776 -11.97341 -11.95711 -11.86007 -11.78877 -11.62674 -11.60689 -11.37838 -11.24011 -11.10183 -10.47360 -10.19535 -9.55290 -8.91537 -8.19567 -5.51262 1.04270 1.51105 1.59544 1.67346 1.85969 2.04038 2.13947 2.66626 2.86047 3.22925 3.44568 3.54286 3.64698 3.77671 3.80775 3.93937 3.98522 4.06761 4.24924 4.32742 4.34113 4.36522 4.41269 4.50730 4.55988 4.62765 4.67535 4.71721 4.74236 4.77423 4.91121 4.95773 4.99589 5.03407 5.07976 5.13198 5.16641 5.17125 5.26279 5.40141 5.41198 5.44926 5.53539 5.66507 5.86879 5.92040 6.39468 6.93051 6.94810 7.08079 7.52181 7.75387 8.25136 8.98975 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025265 B = 0.002266 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.995985 B =12351.099389 C =12693.010054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.071 4.071 3 H 0.084 0.916 4 C -0.121 4.121 5 C 0.100 3.900 6 N -0.622 5.622 7 C 0.703 3.297 8 O -0.633 6.633 9 N -0.724 5.724 10 C 0.180 3.820 11 C -0.119 4.119 12 C 0.142 3.858 13 N -0.614 5.614 14 C -0.357 4.357 15 H 0.052 0.948 16 C -0.073 4.073 17 N -0.941 5.941 18 Si 1.116 2.884 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.272 1.272 22 C 0.167 3.833 23 C -0.125 4.125 24 C 0.142 3.858 25 C -0.089 4.089 26 H 0.114 0.886 27 C 0.493 3.507 28 O -0.529 6.529 29 O -0.515 6.515 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.409 0.591 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.010 0.990 43 H 0.252 0.748 44 H -0.003 1.003 45 H 0.037 0.963 46 H 0.064 0.936 47 H 0.047 0.953 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 27.828 0.279 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.089 4.089 3 H 0.103 0.897 4 C -0.159 4.159 5 C -0.022 4.022 6 N -0.359 5.359 7 C 0.405 3.595 8 O -0.514 6.514 9 N -0.381 5.381 10 C 0.075 3.925 11 C -0.158 4.158 12 C 0.017 3.983 13 N -0.339 5.339 14 C -0.487 4.487 15 H 0.070 0.930 16 C -0.271 4.271 17 N -0.582 5.582 18 Si 0.940 3.060 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.197 1.197 22 C 0.040 3.960 23 C -0.165 4.165 24 C 0.018 3.982 25 C -0.109 4.109 26 H 0.132 0.868 27 C 0.336 3.664 28 O -0.419 6.419 29 O -0.329 6.329 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.127 0.873 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.248 0.752 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.028 0.972 43 H 0.061 0.939 44 H 0.015 0.985 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.066 0.934 48 H 0.100 0.900 49 H 0.098 0.902 50 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -5.978 25.997 -0.098 26.675 hybrid contribution 0.619 1.652 -0.811 1.942 sum -5.359 27.649 -0.910 28.178 Atomic orbital electron populations 1.22112 0.94256 1.02065 1.03326 1.20970 0.96983 0.99345 0.91642 0.89716 1.21956 1.01453 0.94215 0.98306 1.22030 1.01802 0.93918 0.84464 1.47182 1.60201 1.20395 1.08092 1.16025 0.78482 0.80913 0.84081 1.90909 1.59503 1.68635 1.32385 1.45232 1.66827 1.18690 1.07307 1.20477 0.93455 0.79960 0.98625 1.22101 1.00200 0.97803 0.95710 1.21052 0.90232 0.88387 0.98674 1.44337 1.37590 1.24644 1.27350 1.20153 1.49872 0.88665 0.90009 0.92993 1.27441 1.00698 0.99576 0.99343 1.70897 1.38327 1.37440 1.11491 0.82863 0.76181 0.73289 0.73669 1.20276 1.22128 1.19716 1.20725 0.92766 0.94507 0.87979 1.22300 0.98272 0.95408 1.00556 1.21147 1.00211 0.90130 0.86677 1.21410 1.03528 0.95257 0.90715 0.86762 1.23273 0.75835 0.82248 0.85083 1.90676 1.36900 1.26829 1.87453 1.84567 1.72602 1.58484 1.17255 0.90894 0.92293 0.92509 0.87256 0.90978 0.89422 0.88761 0.75157 0.92463 0.90622 0.88993 0.91843 0.97163 0.93872 0.98523 0.94392 0.91697 0.93432 0.89951 0.90219 0.70963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 8.13 71.98 0.59 -1.34 16 2 C -0.07 -0.81 2.35 -10.76 -0.03 -0.83 16 3 H 0.08 0.98 8.07 -2.39 -0.02 0.96 16 4 C -0.12 -1.00 5.63 30.67 0.17 -0.83 16 5 C 0.10 1.12 5.93 86.36 0.51 1.63 16 6 N -0.62 -12.18 2.98 -837.76 -2.50 -14.68 16 7 C 0.70 20.02 8.27 179.05 1.48 21.50 16 8 O -0.63 -24.50 15.39 -3.99 -0.06 -24.57 16 9 N -0.72 -18.33 4.99 -457.69 -2.28 -20.61 16 10 C 0.18 5.97 2.46 45.02 0.11 6.08 16 11 C -0.12 -3.58 5.55 30.67 0.17 -3.41 16 12 C 0.14 5.76 6.51 86.36 0.56 6.32 16 13 N -0.61 -30.86 2.71 -698.27 -1.89 -32.75 16 14 C -0.36 -19.84 9.40 84.03 0.79 -19.05 16 15 H 0.05 2.84 7.93 -2.91 -0.02 2.81 16 16 C -0.07 -4.21 4.70 84.86 0.40 -3.81 16 17 N -0.94 -58.74 12.74 21.65 0.28 -58.47 16 18 Si 1.12 50.71 29.98 68.60 2.06 52.77 16 19 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 20 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 22 C 0.17 8.22 4.84 86.51 0.42 8.64 16 23 C -0.12 -4.88 5.67 30.82 0.17 -4.71 16 24 C 0.14 2.68 5.16 86.22 0.45 3.13 16 25 C -0.09 -1.32 2.54 -11.60 -0.03 -1.35 16 26 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 27 C 0.49 7.96 7.34 71.24 0.52 8.48 16 28 O -0.53 -10.54 14.50 21.98 0.32 -10.23 16 29 O -0.52 -6.98 13.35 -51.42 -0.69 -7.67 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.96 5.63 -2.39 -0.01 0.95 16 32 H 0.06 0.68 4.99 -2.38 -0.01 0.67 16 33 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.09 0.83 6.69 -2.39 -0.02 0.81 16 36 H 0.09 0.83 5.62 -2.39 -0.01 0.82 16 37 H 0.41 7.32 6.08 -92.71 -0.56 6.76 16 38 H 0.06 2.24 7.51 -2.39 -0.02 2.22 16 39 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 41 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 42 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 43 H 0.25 16.20 6.98 -92.70 -0.65 15.55 16 44 H 0.00 -0.17 7.87 -2.39 -0.02 -0.19 16 45 H 0.04 2.09 6.90 -2.38 -0.02 2.08 16 46 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 47 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.08 2.02 6.99 -2.39 -0.02 2.00 16 49 H 0.08 1.37 6.70 -2.39 -0.02 1.35 16 50 H 0.43 2.04 9.10 -74.05 -0.67 1.36 16 Total: -1.00 -78.85 380.70 1.38 -77.47 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -0.14 Total: 18.28 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 6.29 Total: 20.46 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -6.40 Total: -126.51 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -0.43 Total: -42.46 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.06 Total: 52.77 kcal Total: -78.85 1.38 -77.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603417110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.797 kcal (2) G-P(sol) polarization free energy of solvation -78.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds