Wall clock time and date at job start Sat Apr 11 2020 05:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.45639 * 2 1 4 4 C 1.53036 * 109.44303 * 240.03552 * 2 1 3 5 5 C 1.52760 * 109.38549 * 301.22214 * 4 2 1 6 6 N 1.46929 * 109.00818 * 305.59075 * 5 4 2 7 7 C 1.34770 * 120.63332 * 233.57858 * 6 5 4 8 8 O 1.21590 * 119.99783 * 4.88452 * 7 6 5 9 9 N 1.34771 * 120.00390 * 184.87957 * 7 6 5 10 10 C 1.46500 * 120.00589 * 175.02464 * 9 7 6 11 11 C 1.53030 * 109.46493 * 155.00277 * 10 9 7 12 12 C 1.53195 * 109.34228 * 181.37130 * 11 10 9 13 13 N 1.46929 * 108.76897 * 305.41141 * 12 11 10 14 14 C 1.36941 * 120.60647 * 233.57295 * 13 12 11 15 15 H 1.07994 * 119.99931 * 147.96025 * 14 13 12 16 16 C 1.38812 * 119.99835 * 327.96458 * 14 13 12 17 17 N 1.31618 * 119.99930 * 165.80348 * 16 14 13 18 18 Si 1.86801 * 119.99906 * 345.80135 * 16 14 13 19 19 H 1.48497 * 109.47190 * 90.72897 * 18 16 14 20 20 H 1.48505 * 109.46821 * 210.72512 * 18 16 14 21 21 H 1.48492 * 109.47329 * 330.72724 * 18 16 14 22 22 C 1.46924 * 118.76368 * 53.55877 * 13 12 11 23 23 C 1.53045 * 109.45896 * 275.07279 * 10 9 7 24 24 C 1.46927 * 118.73625 * 53.31048 * 6 5 4 25 25 C 1.53040 * 109.45863 * 119.97424 * 2 1 3 26 26 H 1.09005 * 109.49376 * 178.59088 * 25 2 1 27 27 C 1.50700 * 109.52512 * 298.66891 * 25 2 1 28 28 O 1.20826 * 119.99696 * 359.85914 * 27 25 2 29 29 O 1.34228 * 120.00151 * 179.85359 * 27 25 2 30 30 H 1.09006 * 109.46897 * 300.02350 * 1 2 3 31 31 H 1.09000 * 109.47285 * 60.02413 * 1 2 3 32 32 H 1.09002 * 109.47209 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.50380 * 61.30282 * 4 2 1 34 34 H 1.09010 * 109.49516 * 181.36869 * 4 2 1 35 35 H 1.08998 * 109.50964 * 185.70960 * 5 4 2 36 36 H 1.08999 * 109.43358 * 65.43047 * 5 4 2 37 37 H 0.97000 * 119.99696 * 355.02834 * 9 7 6 38 38 H 1.09005 * 109.45910 * 35.02369 * 10 9 7 39 39 H 1.09008 * 109.49873 * 301.33764 * 11 10 9 40 40 H 1.09001 * 109.49981 * 61.40104 * 11 10 9 41 41 H 1.09000 * 109.58650 * 65.16580 * 12 11 10 42 42 H 1.08995 * 109.58922 * 185.59365 * 12 11 10 43 43 H 0.96991 * 120.00346 * 180.02562 * 17 16 14 44 44 H 1.09006 * 109.58867 * 186.62323 * 22 13 12 45 45 H 1.08999 * 109.71023 * 66.26656 * 22 13 12 46 46 H 1.09002 * 109.49453 * 298.56053 * 23 10 9 47 47 H 1.09001 * 109.49936 * 58.62846 * 23 10 9 48 48 H 1.09003 * 109.58733 * 66.42468 * 24 6 5 49 49 H 1.08997 * 109.58779 * 186.70736 * 24 6 5 50 50 H 0.96702 * 116.99875 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0395 -0.7208 -1.2502 5 6 1.5039 -2.1513 -1.2643 6 7 1.8620 -2.8089 -0.0002 7 6 2.5156 -3.9875 -0.0003 8 8 2.8929 -4.4733 -1.0491 9 7 2.7511 -4.6277 1.1621 10 6 3.3635 -5.9585 1.1545 11 6 4.0782 -6.1985 2.4862 12 6 4.7464 -7.5769 2.4623 13 7 3.7332 -8.5877 2.1297 14 6 3.5457 -9.6785 2.9361 15 1 2.5633 -10.1167 3.0318 16 6 4.6182 -10.2207 3.6307 17 7 4.4046 -11.0759 4.6081 18 14 6.3648 -9.7367 3.1782 19 1 6.7773 -8.5603 3.9850 20 1 7.2806 -10.8724 3.4549 21 1 6.4249 -9.3926 1.7349 22 6 2.9251 -8.4061 0.9162 23 6 2.2772 -7.0186 0.9583 24 6 1.4994 -2.1542 1.2642 25 6 2.0399 -0.7209 1.2500 26 1 3.1296 -0.7432 1.2380 27 6 1.5652 0.0079 2.4806 28 8 0.8903 1.0040 2.3701 29 8 1.8920 -0.4495 3.6995 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5134 -0.8902 32 1 -0.3634 -1.0277 0.0005 33 1 1.6954 -0.1934 -2.1399 34 1 3.1293 -0.7426 -1.2389 35 1 1.9456 -2.6971 -2.0981 36 1 0.4194 -2.1315 -1.3715 37 1 2.5150 -4.2073 2.0037 38 1 4.0840 -6.0221 0.3390 39 1 4.8360 -5.4295 2.6363 40 1 3.3541 -6.1594 3.3000 41 1 5.5341 -7.5881 1.7090 42 1 5.1718 -7.7938 3.4420 43 1 5.1540 -11.4545 5.0937 44 1 2.1491 -9.1706 0.8761 45 1 3.5619 -8.4854 0.0352 46 1 1.5699 -6.9722 1.7864 47 1 1.7527 -6.8328 0.0210 48 1 0.4144 -2.1345 1.3674 49 1 1.9358 -2.7034 2.0984 50 1 1.5641 0.0514 4.4589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603417111.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:29 Heat of formation + Delta-G solvation = -90.421529 kcal Electronic energy + Delta-G solvation = -31122.877823 eV Core-core repulsion = 26957.880160 eV Total energy + Delta-G solvation = -4164.997663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.46242 -40.26439 -38.55783 -37.46464 -36.54563 -34.67888 -33.87394 -32.33120 -31.77406 -30.42302 -29.97444 -28.22984 -25.57486 -25.12630 -24.41049 -22.91827 -22.43711 -21.68000 -20.42467 -19.77859 -18.98392 -18.51149 -18.14479 -16.98571 -16.90267 -16.66530 -16.08793 -15.50920 -15.29569 -15.21421 -14.83577 -14.47808 -14.17810 -14.10885 -13.91744 -13.79396 -13.71149 -13.08793 -13.03286 -12.85389 -12.47420 -12.37557 -12.16640 -12.04414 -11.97865 -11.77050 -11.72191 -11.41189 -11.25634 -11.12227 -10.90869 -10.84325 -10.61644 -10.51918 -10.27938 -10.17823 -9.98928 -9.73057 -9.49803 -9.03374 -8.65136 -8.61607 -6.91772 -5.94046 -3.36921 1.67878 2.37603 2.64418 3.17006 3.30594 3.48242 3.51210 3.77232 3.95467 4.19110 4.38554 4.52141 4.57137 4.67718 4.86445 4.90024 4.95341 4.98927 5.09906 5.17728 5.26126 5.29779 5.31981 5.34574 5.42846 5.54376 5.64324 5.68712 5.69120 5.80028 5.83766 5.92612 6.05388 6.10484 6.14470 6.17111 6.21678 6.35309 6.42552 6.57177 6.65822 6.66487 6.74268 6.83720 6.98729 7.42593 7.90574 8.01136 8.35101 8.58286 8.94545 9.71383 10.10802 11.22101 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.002673 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.930154 B =10473.188697 C =11248.764545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.074 4.074 3 H 0.082 0.918 4 C -0.130 4.130 5 C 0.125 3.875 6 N -0.630 5.630 7 C 0.709 3.291 8 O -0.585 6.585 9 N -0.739 5.739 10 C 0.167 3.833 11 C -0.140 4.140 12 C 0.128 3.872 13 N -0.607 5.607 14 C -0.260 4.260 15 H 0.085 0.915 16 C 0.023 3.977 17 N -0.914 5.914 18 Si 0.889 3.111 19 H -0.288 1.288 20 H -0.304 1.304 21 H -0.268 1.268 22 C 0.151 3.849 23 C -0.141 4.141 24 C 0.123 3.877 25 C -0.093 4.093 26 H 0.115 0.885 27 C 0.486 3.514 28 O -0.506 6.506 29 O -0.513 6.513 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.392 0.608 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.029 0.971 42 H 0.076 0.924 43 H 0.263 0.737 44 H 0.065 0.935 45 H 0.026 0.974 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.077 0.923 49 H 0.091 0.909 50 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 25.657 -6.798 27.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.093 4.093 3 H 0.100 0.900 4 C -0.168 4.168 5 C 0.002 3.998 6 N -0.369 5.369 7 C 0.410 3.590 8 O -0.462 6.462 9 N -0.395 5.395 10 C 0.063 3.937 11 C -0.180 4.180 12 C 0.001 3.999 13 N -0.331 5.331 14 C -0.388 4.388 15 H 0.102 0.898 16 C -0.175 4.175 17 N -0.557 5.557 18 Si 0.720 3.280 19 H -0.216 1.216 20 H -0.232 1.232 21 H -0.193 1.193 22 C 0.025 3.975 23 C -0.182 4.182 24 C -0.001 4.001 25 C -0.113 4.113 26 H 0.133 0.867 27 C 0.328 3.672 28 O -0.394 6.394 29 O -0.325 6.325 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.227 0.773 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.043 0.957 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.096 0.904 49 H 0.109 0.891 50 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -6.456 25.154 -7.830 27.124 hybrid contribution 0.702 0.937 0.981 1.527 sum -5.754 26.091 -6.849 27.582 Atomic orbital electron populations 1.22168 0.94211 1.02246 1.03538 1.20969 0.97114 0.99294 0.91874 0.89960 1.21926 1.01575 0.95684 0.97642 1.21438 0.99853 0.92245 0.86265 1.47221 1.61696 1.21548 1.06416 1.15850 0.78409 0.79987 0.84707 1.90919 1.56858 1.67647 1.30775 1.45669 1.66948 1.20060 1.06780 1.20884 0.94760 0.79145 0.98955 1.22348 0.99955 0.99478 0.96214 1.21363 0.91707 0.87052 0.99744 1.44375 1.41687 1.22772 1.24293 1.18925 0.95147 1.04608 1.20129 0.89784 1.25401 0.97875 0.96489 0.97772 1.69773 1.31163 1.32911 1.21832 0.86870 0.85636 0.76184 0.79282 1.21567 1.23224 1.19306 1.20900 0.94242 0.93668 0.88703 1.22406 0.98023 0.96659 1.01070 1.21462 1.00741 0.90497 0.87418 1.21500 1.03488 0.96066 0.90232 0.86741 1.23263 0.76492 0.82829 0.84638 1.90690 1.35860 1.25744 1.87076 1.84555 1.72880 1.58227 1.16868 0.90545 0.92206 0.92406 0.89811 0.91104 0.88396 0.91352 0.77257 0.89776 0.92287 0.91251 0.95297 0.90615 0.92743 0.91620 0.95652 0.91983 0.92344 0.90437 0.89078 0.72796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 8.13 37.16 0.30 -0.82 16 2 C -0.07 -0.49 2.35 -90.58 -0.21 -0.70 16 3 H 0.08 0.56 8.07 -51.93 -0.42 0.15 16 4 C -0.13 -0.85 5.61 -26.84 -0.15 -1.00 16 5 C 0.12 1.07 5.95 -3.93 -0.02 1.05 16 6 N -0.63 -6.31 2.98 -178.77 -0.53 -6.84 16 7 C 0.71 9.81 8.26 -86.93 -0.72 9.09 16 8 O -0.58 -10.39 15.39 5.29 0.08 -10.31 16 9 N -0.74 -9.65 4.99 -58.64 -0.29 -9.94 16 10 C 0.17 2.67 2.46 -67.89 -0.17 2.51 16 11 C -0.14 -2.32 5.55 -26.61 -0.15 -2.47 16 12 C 0.13 2.70 4.16 -3.71 -0.02 2.69 16 13 N -0.61 -14.28 2.73 -172.32 -0.47 -14.75 16 14 C -0.26 -7.20 10.04 -15.06 -0.15 -7.35 16 15 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 16 C 0.02 0.67 5.32 -17.43 -0.09 0.58 16 17 N -0.91 -27.89 13.97 55.49 0.78 -27.12 16 18 Si 0.89 22.31 24.29 -169.99 -4.13 18.19 16 19 H -0.29 -6.89 6.63 56.52 0.37 -6.51 16 20 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 21 H -0.27 -6.62 6.41 56.52 0.36 -6.26 16 22 C 0.15 3.04 6.52 -3.71 -0.02 3.02 16 23 C -0.14 -2.41 5.65 -26.61 -0.15 -2.56 16 24 C 0.12 0.93 5.14 -3.71 -0.02 0.91 16 25 C -0.09 -0.63 2.56 -91.66 -0.23 -0.87 16 26 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 27 C 0.49 3.58 7.34 36.01 0.26 3.84 16 28 O -0.51 -4.92 14.51 -18.75 -0.27 -5.19 16 29 O -0.51 -2.91 13.35 -39.25 -0.52 -3.44 16 30 H 0.08 0.64 5.64 -51.93 -0.29 0.34 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.39 4.99 -51.93 -0.26 0.13 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.10 1.02 6.99 -51.93 -0.36 0.66 16 36 H 0.07 0.52 6.70 -51.93 -0.35 0.17 16 37 H 0.39 4.14 6.09 -40.82 -0.25 3.89 16 38 H 0.08 1.51 7.51 -51.93 -0.39 1.12 16 39 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.03 0.62 6.83 -51.93 -0.35 0.26 16 42 H 0.08 1.74 4.63 -51.93 -0.24 1.50 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.07 1.32 7.93 -51.93 -0.41 0.90 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.08 0.54 6.69 -51.93 -0.35 0.19 16 49 H 0.09 0.65 5.64 -51.93 -0.29 0.35 16 50 H 0.41 0.77 9.10 45.56 0.41 1.18 16 LS Contribution 373.84 15.07 5.63 5.63 Total: -1.00 -34.74 373.84 -8.25 -42.99 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.98 Total: 2.86 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -1.54 Total: 7.91 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.52 Total: -58.64 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.71 Total: -18.94 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.13 Total: 18.19 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.74 -8.25 -42.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603417111.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.429 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds