Wall clock time and date at job start Sat Apr 11 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.45639 * 2 1 4 4 C 1.53036 * 109.44303 * 240.03552 * 2 1 3 5 5 C 1.52760 * 109.38549 * 301.22214 * 4 2 1 6 6 N 1.46929 * 109.00818 * 305.59075 * 5 4 2 7 7 C 1.34770 * 120.63332 * 233.57858 * 6 5 4 8 8 O 1.21590 * 119.99783 * 4.88452 * 7 6 5 9 9 N 1.34771 * 120.00390 * 184.87957 * 7 6 5 10 10 C 1.46500 * 120.00589 * 175.02464 * 9 7 6 11 11 C 1.53030 * 109.46493 * 155.00277 * 10 9 7 12 12 C 1.53195 * 109.34228 * 181.37130 * 11 10 9 13 13 N 1.46929 * 108.76897 * 305.41141 * 12 11 10 14 14 C 1.36941 * 120.60647 * 233.57295 * 13 12 11 15 15 H 1.07994 * 119.99931 * 147.96025 * 14 13 12 16 16 C 1.38812 * 119.99835 * 327.96458 * 14 13 12 17 17 N 1.31618 * 119.99930 * 165.80348 * 16 14 13 18 18 Si 1.86801 * 119.99906 * 345.80135 * 16 14 13 19 19 H 1.48497 * 109.47190 * 90.72897 * 18 16 14 20 20 H 1.48505 * 109.46821 * 210.72512 * 18 16 14 21 21 H 1.48492 * 109.47329 * 330.72724 * 18 16 14 22 22 C 1.46924 * 118.76368 * 53.55877 * 13 12 11 23 23 C 1.53045 * 109.45896 * 275.07279 * 10 9 7 24 24 C 1.46927 * 118.73625 * 53.31048 * 6 5 4 25 25 C 1.53040 * 109.45863 * 119.97424 * 2 1 3 26 26 H 1.09005 * 109.49376 * 178.59088 * 25 2 1 27 27 C 1.50700 * 109.52512 * 298.66891 * 25 2 1 28 28 O 1.20826 * 119.99696 * 359.85914 * 27 25 2 29 29 O 1.34228 * 120.00151 * 179.85359 * 27 25 2 30 30 H 1.09006 * 109.46897 * 300.02350 * 1 2 3 31 31 H 1.09000 * 109.47285 * 60.02413 * 1 2 3 32 32 H 1.09002 * 109.47209 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.50380 * 61.30282 * 4 2 1 34 34 H 1.09010 * 109.49516 * 181.36869 * 4 2 1 35 35 H 1.08998 * 109.50964 * 185.70960 * 5 4 2 36 36 H 1.08999 * 109.43358 * 65.43047 * 5 4 2 37 37 H 0.97000 * 119.99696 * 355.02834 * 9 7 6 38 38 H 1.09005 * 109.45910 * 35.02369 * 10 9 7 39 39 H 1.09008 * 109.49873 * 301.33764 * 11 10 9 40 40 H 1.09001 * 109.49981 * 61.40104 * 11 10 9 41 41 H 1.09000 * 109.58650 * 65.16580 * 12 11 10 42 42 H 1.08995 * 109.58922 * 185.59365 * 12 11 10 43 43 H 0.96991 * 120.00346 * 180.02562 * 17 16 14 44 44 H 1.09006 * 109.58867 * 186.62323 * 22 13 12 45 45 H 1.08999 * 109.71023 * 66.26656 * 22 13 12 46 46 H 1.09002 * 109.49453 * 298.56053 * 23 10 9 47 47 H 1.09001 * 109.49936 * 58.62846 * 23 10 9 48 48 H 1.09003 * 109.58733 * 66.42468 * 24 6 5 49 49 H 1.08997 * 109.58779 * 186.70736 * 24 6 5 50 50 H 0.96702 * 116.99875 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0395 -0.7208 -1.2502 5 6 1.5039 -2.1513 -1.2643 6 7 1.8620 -2.8089 -0.0002 7 6 2.5156 -3.9875 -0.0003 8 8 2.8929 -4.4733 -1.0491 9 7 2.7511 -4.6277 1.1621 10 6 3.3635 -5.9585 1.1545 11 6 4.0782 -6.1985 2.4862 12 6 4.7464 -7.5769 2.4623 13 7 3.7332 -8.5877 2.1297 14 6 3.5457 -9.6785 2.9361 15 1 2.5633 -10.1167 3.0318 16 6 4.6182 -10.2207 3.6307 17 7 4.4046 -11.0759 4.6081 18 14 6.3648 -9.7367 3.1782 19 1 6.7773 -8.5603 3.9850 20 1 7.2806 -10.8724 3.4549 21 1 6.4249 -9.3926 1.7349 22 6 2.9251 -8.4061 0.9162 23 6 2.2772 -7.0186 0.9583 24 6 1.4994 -2.1542 1.2642 25 6 2.0399 -0.7209 1.2500 26 1 3.1296 -0.7432 1.2380 27 6 1.5652 0.0079 2.4806 28 8 0.8903 1.0040 2.3701 29 8 1.8920 -0.4495 3.6995 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5134 -0.8902 32 1 -0.3634 -1.0277 0.0005 33 1 1.6954 -0.1934 -2.1399 34 1 3.1293 -0.7426 -1.2389 35 1 1.9456 -2.6971 -2.0981 36 1 0.4194 -2.1315 -1.3715 37 1 2.5150 -4.2073 2.0037 38 1 4.0840 -6.0221 0.3390 39 1 4.8360 -5.4295 2.6363 40 1 3.3541 -6.1594 3.3000 41 1 5.5341 -7.5881 1.7090 42 1 5.1718 -7.7938 3.4420 43 1 5.1540 -11.4545 5.0937 44 1 2.1491 -9.1706 0.8761 45 1 3.5619 -8.4854 0.0352 46 1 1.5699 -6.9722 1.7864 47 1 1.7527 -6.8328 0.0210 48 1 0.4144 -2.1345 1.3674 49 1 1.9358 -2.7034 2.0984 50 1 1.5641 0.0514 4.4589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603417111.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:28 Heat of formation + Delta-G solvation = -115.342554 kcal Electronic energy + Delta-G solvation = -31123.958480 eV Core-core repulsion = 26957.880160 eV Total energy + Delta-G solvation = -4166.078320 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.14088 -41.14247 -39.64498 -38.63089 -37.11573 -36.10292 -34.80482 -33.91875 -32.70396 -31.96166 -31.48584 -28.87927 -26.91715 -25.97679 -25.39224 -24.45210 -23.59896 -22.73152 -21.36107 -21.22607 -19.89789 -19.15054 -18.94269 -18.57844 -17.78564 -17.52796 -17.18614 -16.79794 -16.33164 -15.96131 -15.92650 -15.68257 -15.38111 -15.35193 -15.07520 -14.83154 -14.63640 -14.38398 -14.31553 -14.12209 -13.81800 -13.56649 -13.43300 -13.04107 -12.74341 -12.62512 -12.59159 -12.49820 -12.31755 -12.23489 -12.05706 -11.94559 -11.84840 -11.73412 -11.65330 -11.52073 -11.36224 -11.19729 -11.16647 -10.71613 -10.15089 -9.52396 -8.87851 -8.14513 -5.54143 1.11820 1.31159 1.44309 1.52684 1.55890 2.03999 2.16977 2.42828 2.86189 3.11925 3.32112 3.40693 3.61615 3.79891 3.84226 3.99358 4.01570 4.11735 4.23513 4.30859 4.34800 4.35294 4.41933 4.51039 4.55116 4.64579 4.65994 4.72353 4.75916 4.78729 4.88853 4.93786 4.95457 5.05082 5.09568 5.10440 5.16716 5.18660 5.27404 5.41102 5.42172 5.49926 5.57913 5.70517 5.90195 5.91651 6.15628 6.93192 6.93703 6.99345 7.54866 7.61653 8.04000 9.05453 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.002673 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.930154 B =10473.188697 C =11248.764545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.071 4.071 3 H 0.083 0.917 4 C -0.120 4.120 5 C 0.121 3.879 6 N -0.622 5.622 7 C 0.706 3.294 8 O -0.627 6.627 9 N -0.728 5.728 10 C 0.177 3.823 11 C -0.127 4.127 12 C 0.120 3.880 13 N -0.620 5.620 14 C -0.249 4.249 15 H 0.050 0.950 16 C -0.033 4.033 17 N -0.961 5.961 18 Si 0.952 3.048 19 H -0.266 1.266 20 H -0.313 1.313 21 H -0.262 1.262 22 C 0.148 3.852 23 C -0.127 4.127 24 C 0.122 3.878 25 C -0.090 4.090 26 H 0.120 0.880 27 C 0.493 3.507 28 O -0.532 6.532 29 O -0.512 6.512 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.406 0.594 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.033 0.967 42 H 0.059 0.941 43 H 0.262 0.738 44 H 0.057 0.943 45 H 0.028 0.972 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.087 0.913 49 H 0.099 0.901 50 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.456 28.552 -7.148 30.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.089 4.089 3 H 0.101 0.899 4 C -0.158 4.158 5 C -0.001 4.001 6 N -0.359 5.359 7 C 0.408 3.592 8 O -0.508 6.508 9 N -0.385 5.385 10 C 0.072 3.928 11 C -0.166 4.166 12 C -0.006 4.006 13 N -0.345 5.345 14 C -0.378 4.378 15 H 0.068 0.932 16 C -0.228 4.228 17 N -0.607 5.607 18 Si 0.780 3.220 19 H -0.193 1.193 20 H -0.243 1.243 21 H -0.186 1.186 22 C 0.022 3.978 23 C -0.167 4.167 24 C -0.002 4.002 25 C -0.110 4.110 26 H 0.138 0.862 27 C 0.336 3.664 28 O -0.422 6.422 29 O -0.326 6.326 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.245 0.755 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.105 0.895 49 H 0.117 0.883 50 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -6.188 28.138 -8.161 29.944 hybrid contribution 0.489 0.066 1.074 1.182 sum -5.699 28.205 -7.087 29.634 Atomic orbital electron populations 1.22111 0.94224 1.02147 1.03244 1.20941 0.96998 0.99265 0.91726 0.89905 1.21856 1.01176 0.94346 0.98449 1.21567 1.00611 0.92929 0.84992 1.47210 1.60341 1.20418 1.07917 1.15966 0.78434 0.80784 0.84023 1.90897 1.58635 1.69016 1.32235 1.45316 1.66720 1.18956 1.07495 1.20533 0.94003 0.80219 0.98046 1.22155 1.00596 0.97332 0.96533 1.21423 0.91585 0.88797 0.98752 1.44475 1.42612 1.22468 1.24925 1.18838 0.93754 1.05463 1.19774 0.93217 1.26036 1.01807 0.97064 0.97888 1.69909 1.32184 1.35143 1.23498 0.85862 0.80526 0.76160 0.79415 1.19262 1.24263 1.18648 1.20999 0.93837 0.95474 0.87464 1.22215 0.98118 0.95097 1.01311 1.21610 1.01478 0.90771 0.86292 1.21468 1.03791 0.95419 0.90316 0.86166 1.23234 0.75781 0.82296 0.85122 1.90694 1.37072 1.26931 1.87481 1.84517 1.72622 1.58374 1.17048 0.91937 0.91436 0.92323 0.88073 0.91580 0.90396 0.89989 0.75502 0.91341 0.89241 0.90815 0.94945 0.92296 0.92896 0.92455 0.95355 0.91915 0.91888 0.89454 0.88295 0.70855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 8.13 71.98 0.59 -1.24 16 2 C -0.07 -0.77 2.35 -10.77 -0.03 -0.79 16 3 H 0.08 0.94 8.07 -2.39 -0.02 0.92 16 4 C -0.12 -1.29 5.61 30.53 0.17 -1.12 16 5 C 0.12 1.86 5.95 86.22 0.51 2.37 16 6 N -0.62 -11.02 2.98 -837.76 -2.50 -13.51 16 7 C 0.71 18.12 8.26 179.06 1.48 19.60 16 8 O -0.63 -21.62 15.39 -4.00 -0.06 -21.68 16 9 N -0.73 -17.03 4.99 -457.70 -2.28 -19.31 16 10 C 0.18 5.28 2.46 45.02 0.11 5.39 16 11 C -0.13 -3.83 5.55 30.67 0.17 -3.66 16 12 C 0.12 4.85 4.16 86.36 0.36 5.20 16 13 N -0.62 -28.84 2.73 -699.09 -1.91 -30.75 16 14 C -0.25 -14.03 10.04 84.03 0.84 -13.18 16 15 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16 16 C -0.03 -1.93 5.32 84.86 0.45 -1.48 16 17 N -0.96 -60.16 13.97 21.65 0.30 -59.85 16 18 Si 0.95 46.16 24.29 68.60 1.67 47.83 16 19 H -0.27 -11.89 6.63 99.48 0.66 -11.23 16 20 H -0.31 -15.59 7.11 99.48 0.71 -14.89 16 21 H -0.26 -12.29 6.41 99.48 0.64 -11.65 16 22 C 0.15 5.88 6.52 86.36 0.56 6.44 16 23 C -0.13 -4.16 5.65 30.67 0.17 -3.99 16 24 C 0.12 1.48 5.14 86.36 0.44 1.92 16 25 C -0.09 -0.99 2.56 -11.46 -0.03 -1.02 16 26 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 27 C 0.49 6.07 7.34 71.24 0.52 6.59 16 28 O -0.53 -9.37 14.51 21.96 0.32 -9.05 16 29 O -0.51 -4.37 13.35 -51.39 -0.69 -5.06 16 30 H 0.06 0.93 5.64 -2.38 -0.01 0.92 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.64 4.99 -2.39 -0.01 0.63 16 33 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.08 1.56 6.99 -2.39 -0.02 1.54 16 36 H 0.08 1.05 6.70 -2.39 -0.02 1.03 16 37 H 0.41 7.17 6.09 -92.71 -0.56 6.60 16 38 H 0.07 2.33 7.51 -2.38 -0.02 2.31 16 39 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.03 1.30 6.83 -2.39 -0.02 1.29 16 42 H 0.06 2.59 4.63 -2.39 -0.01 2.58 16 43 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 44 H 0.06 2.33 7.93 -2.38 -0.02 2.31 16 45 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.09 0.95 6.69 -2.39 -0.02 0.94 16 49 H 0.10 1.05 5.64 -2.39 -0.01 1.04 16 50 H 0.43 0.48 9.10 -74.06 -0.67 -0.19 16 Total: -1.00 -76.24 373.84 0.81 -75.43 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -0.38 Total: 14.91 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 6.33 Total: 21.04 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -6.38 Total: -123.43 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -0.43 Total: -35.79 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.67 Total: 47.83 kcal Total: -76.24 0.81 -75.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603417111.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.909 kcal (2) G-P(sol) polarization free energy of solvation -76.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds