Wall clock time and date at job start Sat Apr 11 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.49443 * 2 1 4 4 C 1.53191 * 109.49784 * 239.93376 * 2 1 3 5 5 N 1.46925 * 108.77534 * 294.68300 * 4 2 1 6 6 C 1.34777 * 120.63093 * 126.37118 * 5 4 2 7 7 O 1.21588 * 120.00092 * 5.02381 * 6 5 4 8 8 N 1.34776 * 119.99978 * 184.75131 * 6 5 4 9 9 C 1.46496 * 119.99894 * 175.22335 * 8 6 5 10 10 C 1.53050 * 109.46065 * 275.06630 * 9 8 6 11 11 C 1.53186 * 109.31230 * 178.61558 * 10 9 8 12 12 N 1.46928 * 108.77866 * 54.63727 * 11 10 9 13 13 C 1.36929 * 120.63173 * 126.40872 * 12 11 10 14 14 H 1.07996 * 120.00650 * 328.37940 * 13 12 11 15 15 C 1.38818 * 120.00082 * 148.37830 * 13 12 11 16 16 N 1.31621 * 119.99551 * 349.86699 * 15 13 12 17 17 Si 1.86792 * 120.00335 * 169.86511 * 15 13 12 18 18 H 1.48504 * 109.47077 * 90.00109 * 17 15 13 19 19 H 1.48502 * 109.47280 * 209.99958 * 17 15 13 20 20 H 1.48496 * 109.47281 * 330.00133 * 17 15 13 21 21 C 1.46926 * 118.73426 * 306.39107 * 12 11 10 22 22 C 1.53041 * 109.45868 * 154.99876 * 9 8 6 23 23 C 1.46921 * 118.73649 * 306.63793 * 5 4 2 24 24 C 1.52761 * 109.00752 * 53.31667 * 23 5 4 25 25 C 1.53038 * 109.38101 * 305.58287 * 24 23 5 26 26 H 1.09003 * 109.44875 * 301.22853 * 25 24 23 27 27 C 1.50701 * 109.46312 * 181.26254 * 25 24 23 28 28 O 1.20825 * 120.00076 * 239.93799 * 27 25 24 29 29 O 1.34221 * 119.99855 * 59.92735 * 27 25 24 30 30 H 1.09004 * 109.46633 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47235 * 300.06233 * 1 2 3 32 32 H 1.08999 * 109.46912 * 60.06675 * 1 2 3 33 33 H 1.09005 * 109.58724 * 174.89356 * 4 2 1 34 34 H 1.09007 * 109.58842 * 54.47081 * 4 2 1 35 35 H 0.96995 * 119.99632 * 355.22176 * 8 6 5 36 36 H 1.09002 * 109.46487 * 35.02625 * 9 8 6 37 37 H 1.09000 * 109.49548 * 298.57170 * 10 9 8 38 38 H 1.08997 * 109.49339 * 58.66553 * 10 9 8 39 39 H 1.08998 * 109.58746 * 294.84780 * 11 10 9 40 40 H 1.09001 * 109.70455 * 174.49117 * 11 10 9 41 41 H 0.97002 * 119.99519 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.58768 * 293.81865 * 21 12 11 43 43 H 1.09007 * 109.70016 * 173.46380 * 21 12 11 44 44 H 1.08993 * 109.50007 * 301.33373 * 22 9 8 45 45 H 1.08999 * 109.49686 * 61.40487 * 22 9 8 46 46 H 1.09003 * 109.58178 * 173.14675 * 23 5 4 47 47 H 1.08993 * 109.59477 * 293.57106 * 23 5 4 48 48 H 1.09001 * 109.56680 * 185.55095 * 24 23 5 49 49 H 1.08999 * 109.38828 * 65.50767 * 24 23 5 50 50 H 0.96707 * 116.99803 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 1.6516 -2.1379 -1.1701 6 6 0.9740 -2.7213 -2.1786 7 8 0.7593 -2.1040 -3.2039 8 7 0.5393 -3.9908 -2.0527 9 6 -0.2863 -4.5900 -3.1041 10 6 -1.7531 -4.2184 -2.8745 11 6 -2.6089 -4.8177 -3.9948 12 7 -2.3560 -6.2635 -4.0613 13 6 -3.3925 -7.1565 -4.0043 14 1 -4.2774 -6.9209 -3.4318 15 6 -3.3059 -8.3647 -4.6824 16 7 -2.3257 -8.5713 -5.5362 17 14 -4.5803 -9.6972 -4.3830 18 1 -5.7068 -9.5277 -5.3357 19 1 -3.9586 -11.0308 -4.5839 20 1 -5.0886 -9.5925 -2.9917 21 6 -0.9697 -6.7329 -4.1905 22 6 -0.1321 -6.1122 -3.0680 23 6 2.0092 -2.9025 0.0324 24 6 1.5031 -2.1561 1.2654 25 6 2.0408 -0.7234 1.2481 26 1 3.1306 -0.7449 1.2349 27 6 1.5680 0.0053 2.4796 28 8 0.8919 1.0007 2.3703 29 8 1.8977 -0.4516 3.6978 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 3.1275 -0.6459 -1.2982 34 1 1.6007 -0.2725 -2.1390 35 1 0.7732 -4.5077 -1.2660 36 1 0.0351 -4.2154 -4.0760 37 1 -2.0825 -4.6140 -1.9137 38 1 -1.8582 -3.1335 -2.8771 39 1 -2.3419 -4.3560 -4.9454 40 1 -3.6640 -4.6406 -3.7861 41 1 -2.2655 -9.4154 -6.0103 42 1 -0.5691 -6.4273 -5.1571 43 1 -0.9407 -7.8196 -4.1099 44 1 0.9162 -6.3751 -3.2083 45 1 -0.4763 -6.4899 -2.1053 46 1 1.5474 -3.8889 -0.0111 47 1 3.0927 -3.0063 0.0907 48 1 1.8482 -2.6634 2.1664 49 1 0.4133 -2.1358 1.2541 50 1 1.5715 0.0496 4.4578 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603442864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:40 Heat of formation + Delta-G solvation = -96.614053 kcal Electronic energy + Delta-G solvation = -30991.066512 eV Core-core repulsion = 26825.800321 eV Total energy + Delta-G solvation = -4165.266191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.33663 -40.20036 -38.30535 -37.12807 -36.50068 -34.51757 -33.69967 -32.24984 -31.81664 -30.06592 -29.31508 -27.77936 -26.48303 -24.78163 -23.45000 -22.69922 -22.17447 -21.86612 -20.26390 -19.58272 -18.87318 -18.46486 -18.21698 -16.95873 -16.71338 -16.17092 -16.09725 -15.66065 -15.07368 -14.88555 -14.58760 -14.20897 -13.99274 -13.89050 -13.76892 -13.52741 -13.37853 -13.23058 -12.94227 -12.57031 -12.38470 -12.25813 -12.18624 -11.92411 -11.84494 -11.43478 -11.36630 -11.04296 -10.98460 -10.96357 -10.78047 -10.72091 -10.58980 -10.46191 -10.24458 -10.02428 -9.93822 -9.75235 -9.51949 -8.90467 -8.53488 -8.41355 -6.60740 -5.78088 -3.25630 1.78271 2.55515 2.67492 3.34314 3.37321 3.43933 3.45558 3.89805 4.07244 4.21653 4.45299 4.49320 4.62362 4.82082 4.87800 4.95236 5.09437 5.23799 5.27003 5.37706 5.38102 5.42993 5.48674 5.53502 5.57680 5.63999 5.70415 5.83612 5.87961 5.93351 6.05495 6.10893 6.25891 6.31761 6.34933 6.39969 6.54763 6.60913 6.63986 6.82597 6.90236 7.01907 7.09528 7.36151 7.48667 7.67605 7.79572 8.07239 8.48868 8.74244 9.23399 9.84646 10.43509 11.30478 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021818 B = 0.002346 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.042435 B =11929.957445 C =12271.363087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.091 4.091 3 H 0.090 0.910 4 C 0.136 3.864 5 N -0.633 5.633 6 C 0.707 3.293 7 O -0.587 6.587 8 N -0.740 5.740 9 C 0.167 3.833 10 C -0.138 4.138 11 C 0.148 3.852 12 N -0.593 5.593 13 C -0.251 4.251 14 H 0.064 0.936 15 C 0.003 3.997 16 N -0.906 5.906 17 Si 0.905 3.095 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.176 3.824 22 C -0.146 4.146 23 C 0.115 3.885 24 C -0.131 4.131 25 C -0.073 4.073 26 H 0.111 0.889 27 C 0.482 3.518 28 O -0.507 6.507 29 O -0.517 6.517 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.389 0.611 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.021 0.979 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.240 14.469 17.725 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.110 4.110 3 H 0.108 0.892 4 C 0.012 3.988 5 N -0.372 5.372 6 C 0.409 3.591 7 O -0.464 6.464 8 N -0.395 5.395 9 C 0.063 3.937 10 C -0.179 4.179 11 C 0.021 3.979 12 N -0.316 5.316 13 C -0.381 4.381 14 H 0.081 0.919 15 C -0.195 4.195 16 N -0.550 5.550 17 Si 0.734 3.266 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.049 3.951 22 C -0.186 4.186 23 C -0.009 4.009 24 C -0.169 4.169 25 C -0.092 4.092 26 H 0.129 0.871 27 C 0.324 3.676 28 O -0.395 6.395 29 O -0.329 6.329 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.225 0.775 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.039 0.961 43 H 0.111 0.889 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.103 0.897 47 H 0.091 0.909 48 H 0.108 0.892 49 H 0.098 0.902 50 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 13.026 14.797 16.456 25.679 hybrid contribution -0.667 -0.600 1.196 1.495 sum 12.359 14.197 17.652 25.805 Atomic orbital electron populations 1.22024 0.93762 1.02323 1.03169 1.21438 0.97956 0.99378 0.92242 0.89189 1.21480 0.99120 0.79784 0.98374 1.47268 1.60523 1.11433 1.17997 1.15889 0.78073 0.82068 0.83063 1.90912 1.63113 1.64185 1.28220 1.45730 1.56106 1.12516 1.25143 1.20929 0.89464 0.93230 0.90063 1.22386 0.95262 0.99412 1.00809 1.20882 0.96856 0.85804 0.94393 1.44045 1.02417 0.99536 1.85568 1.19169 0.97447 0.97527 1.23983 0.91851 1.25182 0.98114 0.99959 0.96267 1.69965 1.32897 1.24593 1.27560 0.86266 0.81055 0.81296 0.77945 1.21346 1.21601 1.20499 1.20754 0.82447 0.99947 0.91954 1.22552 1.00174 0.93125 1.02764 1.21482 1.00478 0.95020 0.83923 1.21928 1.02577 0.93056 0.99327 1.21083 1.02667 0.95976 0.89504 0.87117 1.23519 0.76601 0.82734 0.84697 1.90697 1.35839 1.25882 1.87054 1.84537 1.73028 1.58369 1.16962 0.92552 0.90869 0.92274 0.91626 0.88068 0.77511 0.89969 0.92564 0.92890 0.96174 0.92655 0.93577 0.96115 0.88914 0.92838 0.92382 0.89690 0.90896 0.89234 0.90198 0.73173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 8.40 37.16 0.31 -1.31 16 2 C -0.09 -0.75 2.36 -90.50 -0.21 -0.96 16 3 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 4 C 0.14 1.27 5.82 -3.71 -0.02 1.25 16 5 N -0.63 -6.67 2.42 -178.76 -0.43 -7.10 16 6 C 0.71 10.49 8.26 -86.92 -0.72 9.77 16 7 O -0.59 -11.19 15.41 5.29 0.08 -11.11 16 8 N -0.74 -10.45 4.99 -58.63 -0.29 -10.74 16 9 C 0.17 2.93 2.46 -67.89 -0.17 2.77 16 10 C -0.14 -2.56 5.65 -26.61 -0.15 -2.71 16 11 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 12 N -0.59 -14.84 2.99 -172.32 -0.51 -15.36 16 13 C -0.25 -6.86 9.58 -15.06 -0.14 -7.01 16 14 H 0.06 1.70 7.85 -52.49 -0.41 1.29 16 15 C 0.00 0.09 5.06 -17.43 -0.09 0.00 16 16 N -0.91 -26.06 11.04 55.49 0.61 -25.45 16 17 Si 0.90 21.51 29.57 -169.99 -5.03 16.48 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.18 4.12 5.25 -3.71 -0.02 4.10 16 22 C -0.15 -2.66 5.55 -26.61 -0.15 -2.81 16 23 C 0.11 0.81 6.40 -3.94 -0.03 0.78 16 24 C -0.13 -0.82 4.94 -26.83 -0.13 -0.95 16 25 C -0.07 -0.48 2.37 -91.73 -0.22 -0.70 16 26 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 27 C 0.48 3.71 7.34 36.01 0.26 3.98 16 28 O -0.51 -5.44 14.51 -18.75 -0.27 -5.72 16 29 O -0.52 -2.82 13.30 -39.23 -0.52 -3.34 16 30 H 0.06 0.64 5.97 -51.93 -0.31 0.33 16 31 H 0.07 0.82 5.65 -51.93 -0.29 0.53 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 1.18 7.03 -51.93 -0.37 0.81 16 35 H 0.39 4.41 6.06 -40.82 -0.25 4.16 16 36 H 0.08 1.65 7.51 -51.93 -0.39 1.26 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 2.41 6.11 -51.92 -0.32 2.10 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.08 0.56 5.57 -51.93 -0.29 0.27 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 0.43 8.08 -51.93 -0.42 0.01 16 49 H 0.08 0.63 6.33 -51.93 -0.33 0.30 16 50 H 0.41 0.72 9.10 45.56 0.41 1.14 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -34.27 382.48 -9.25 -43.52 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.15 Total: 3.66 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -1.49 Total: 9.38 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -0.63 Total: -58.64 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.71 Total: -20.17 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.27 -9.25 -43.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603442864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.095 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds