Wall clock time and date at job start Sat Apr 11 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.49443 * 2 1 4 4 C 1.53191 * 109.49784 * 239.93376 * 2 1 3 5 5 N 1.46925 * 108.77534 * 294.68300 * 4 2 1 6 6 C 1.34777 * 120.63093 * 126.37118 * 5 4 2 7 7 O 1.21588 * 120.00092 * 5.02381 * 6 5 4 8 8 N 1.34776 * 119.99978 * 184.75131 * 6 5 4 9 9 C 1.46496 * 119.99894 * 175.22335 * 8 6 5 10 10 C 1.53050 * 109.46065 * 275.06630 * 9 8 6 11 11 C 1.53186 * 109.31230 * 178.61558 * 10 9 8 12 12 N 1.46928 * 108.77866 * 54.63727 * 11 10 9 13 13 C 1.36929 * 120.63173 * 126.40872 * 12 11 10 14 14 H 1.07996 * 120.00650 * 328.37940 * 13 12 11 15 15 C 1.38818 * 120.00082 * 148.37830 * 13 12 11 16 16 N 1.31621 * 119.99551 * 349.86699 * 15 13 12 17 17 Si 1.86792 * 120.00335 * 169.86511 * 15 13 12 18 18 H 1.48504 * 109.47077 * 90.00109 * 17 15 13 19 19 H 1.48502 * 109.47280 * 209.99958 * 17 15 13 20 20 H 1.48496 * 109.47281 * 330.00133 * 17 15 13 21 21 C 1.46926 * 118.73426 * 306.39107 * 12 11 10 22 22 C 1.53041 * 109.45868 * 154.99876 * 9 8 6 23 23 C 1.46921 * 118.73649 * 306.63793 * 5 4 2 24 24 C 1.52761 * 109.00752 * 53.31667 * 23 5 4 25 25 C 1.53038 * 109.38101 * 305.58287 * 24 23 5 26 26 H 1.09003 * 109.44875 * 301.22853 * 25 24 23 27 27 C 1.50701 * 109.46312 * 181.26254 * 25 24 23 28 28 O 1.20825 * 120.00076 * 239.93799 * 27 25 24 29 29 O 1.34221 * 119.99855 * 59.92735 * 27 25 24 30 30 H 1.09004 * 109.46633 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47235 * 300.06233 * 1 2 3 32 32 H 1.08999 * 109.46912 * 60.06675 * 1 2 3 33 33 H 1.09005 * 109.58724 * 174.89356 * 4 2 1 34 34 H 1.09007 * 109.58842 * 54.47081 * 4 2 1 35 35 H 0.96995 * 119.99632 * 355.22176 * 8 6 5 36 36 H 1.09002 * 109.46487 * 35.02625 * 9 8 6 37 37 H 1.09000 * 109.49548 * 298.57170 * 10 9 8 38 38 H 1.08997 * 109.49339 * 58.66553 * 10 9 8 39 39 H 1.08998 * 109.58746 * 294.84780 * 11 10 9 40 40 H 1.09001 * 109.70455 * 174.49117 * 11 10 9 41 41 H 0.97002 * 119.99519 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.58768 * 293.81865 * 21 12 11 43 43 H 1.09007 * 109.70016 * 173.46380 * 21 12 11 44 44 H 1.08993 * 109.50007 * 301.33373 * 22 9 8 45 45 H 1.08999 * 109.49686 * 61.40487 * 22 9 8 46 46 H 1.09003 * 109.58178 * 173.14675 * 23 5 4 47 47 H 1.08993 * 109.59477 * 293.57106 * 23 5 4 48 48 H 1.09001 * 109.56680 * 185.55095 * 24 23 5 49 49 H 1.08999 * 109.38828 * 65.50767 * 24 23 5 50 50 H 0.96707 * 116.99803 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 1.6516 -2.1379 -1.1701 6 6 0.9740 -2.7213 -2.1786 7 8 0.7593 -2.1040 -3.2039 8 7 0.5393 -3.9908 -2.0527 9 6 -0.2863 -4.5900 -3.1041 10 6 -1.7531 -4.2184 -2.8745 11 6 -2.6089 -4.8177 -3.9948 12 7 -2.3560 -6.2635 -4.0613 13 6 -3.3925 -7.1565 -4.0043 14 1 -4.2774 -6.9209 -3.4318 15 6 -3.3059 -8.3647 -4.6824 16 7 -2.3257 -8.5713 -5.5362 17 14 -4.5803 -9.6972 -4.3830 18 1 -5.7068 -9.5277 -5.3357 19 1 -3.9586 -11.0308 -4.5839 20 1 -5.0886 -9.5925 -2.9917 21 6 -0.9697 -6.7329 -4.1905 22 6 -0.1321 -6.1122 -3.0680 23 6 2.0092 -2.9025 0.0324 24 6 1.5031 -2.1561 1.2654 25 6 2.0408 -0.7234 1.2481 26 1 3.1306 -0.7449 1.2349 27 6 1.5680 0.0053 2.4796 28 8 0.8919 1.0007 2.3703 29 8 1.8977 -0.4516 3.6978 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 3.1275 -0.6459 -1.2982 34 1 1.6007 -0.2725 -2.1390 35 1 0.7732 -4.5077 -1.2660 36 1 0.0351 -4.2154 -4.0760 37 1 -2.0825 -4.6140 -1.9137 38 1 -1.8582 -3.1335 -2.8771 39 1 -2.3419 -4.3560 -4.9454 40 1 -3.6640 -4.6406 -3.7861 41 1 -2.2655 -9.4154 -6.0103 42 1 -0.5691 -6.4273 -5.1571 43 1 -0.9407 -7.8196 -4.1099 44 1 0.9162 -6.3751 -3.2083 45 1 -0.4763 -6.4899 -2.1053 46 1 1.5474 -3.8889 -0.0111 47 1 3.0927 -3.0063 0.0907 48 1 1.8482 -2.6634 2.1664 49 1 0.4133 -2.1358 1.2541 50 1 1.5715 0.0496 4.4578 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603442864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:39 Heat of formation + Delta-G solvation = -119.681956 kcal Electronic energy + Delta-G solvation = -30992.066811 eV Core-core repulsion = 26825.800321 eV Total energy + Delta-G solvation = -4166.266490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.04790 -41.12922 -39.46230 -38.42285 -37.08374 -36.03141 -34.75118 -33.64905 -32.78235 -31.72413 -31.03997 -28.47592 -27.57823 -26.46307 -24.08622 -23.97709 -23.70129 -23.02028 -21.30820 -21.11792 -19.77841 -19.30110 -18.98281 -18.55402 -17.58605 -17.31183 -16.82250 -16.76599 -16.48025 -16.02673 -15.67761 -15.47236 -15.33143 -15.04260 -14.85766 -14.72583 -14.48152 -14.45298 -14.08315 -13.96464 -13.80298 -13.20913 -12.98594 -12.95821 -12.88123 -12.71067 -12.61459 -12.49824 -12.41174 -12.18652 -12.05124 -11.99825 -11.87201 -11.61387 -11.59589 -11.51765 -11.34973 -11.29427 -11.04212 -10.56097 -10.10567 -9.45107 -8.63889 -7.86223 -5.37685 1.22988 1.49202 1.49689 1.59649 1.64357 2.09451 2.25083 2.52100 2.94594 3.31261 3.47785 3.62766 3.68180 3.91554 3.94848 3.95646 4.08107 4.18087 4.34273 4.35636 4.37955 4.47729 4.56595 4.61703 4.66214 4.69678 4.71190 4.84657 4.85180 4.88064 4.88613 5.02111 5.06786 5.09065 5.12281 5.16347 5.18045 5.30520 5.34721 5.49716 5.58744 5.64323 5.65536 5.71918 5.74409 5.97669 6.42587 7.03043 7.03858 7.16812 7.62415 7.84317 8.38939 9.20411 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021818 B = 0.002346 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.042435 B =11929.957445 C =12271.363087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 H 0.095 0.905 4 C 0.135 3.865 5 N -0.625 5.625 6 C 0.703 3.297 7 O -0.636 6.636 8 N -0.728 5.728 9 C 0.180 3.820 10 C -0.122 4.122 11 C 0.145 3.855 12 N -0.609 5.609 13 C -0.264 4.264 14 H 0.066 0.934 15 C -0.048 4.048 16 N -0.937 5.937 17 Si 0.972 3.028 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.268 1.268 21 C 0.180 3.820 22 C -0.127 4.127 23 C 0.109 3.891 24 C -0.124 4.124 25 C -0.070 4.070 26 H 0.142 0.858 27 C 0.487 3.513 28 O -0.545 6.545 29 O -0.510 6.510 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.407 0.593 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.005 0.995 40 H 0.056 0.944 41 H 0.251 0.749 42 H -0.007 1.007 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.114 0.886 49 H 0.061 0.939 50 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.814 14.192 20.771 29.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 H 0.114 0.886 4 C 0.012 3.988 5 N -0.362 5.362 6 C 0.405 3.595 7 O -0.517 6.517 8 N -0.385 5.385 9 C 0.075 3.925 10 C -0.162 4.162 11 C 0.019 3.981 12 N -0.332 5.332 13 C -0.394 4.394 14 H 0.083 0.917 15 C -0.244 4.244 16 N -0.583 5.583 17 Si 0.799 3.201 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.193 1.193 21 C 0.054 3.946 22 C -0.166 4.166 23 C -0.013 4.013 24 C -0.162 4.162 25 C -0.089 4.089 26 H 0.160 0.840 27 C 0.331 3.669 28 O -0.436 6.436 29 O -0.323 6.323 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.246 0.754 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.023 0.977 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.011 0.989 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.110 0.890 47 H 0.122 0.878 48 H 0.133 0.867 49 H 0.080 0.920 50 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 14.638 14.533 19.603 28.456 hybrid contribution -1.145 -0.429 0.282 1.255 sum 13.494 14.103 19.885 27.864 Atomic orbital electron populations 1.21951 0.95791 1.01167 1.01861 1.21336 0.96086 0.99953 0.92916 0.88639 1.21559 1.00562 0.78954 0.97678 1.47300 1.58973 1.11980 1.17956 1.16050 0.78257 0.81873 0.83368 1.90887 1.64989 1.65250 1.30593 1.45305 1.55603 1.12669 1.24884 1.20476 0.89276 0.92765 0.89990 1.22166 0.95359 0.99067 0.99607 1.20953 0.97717 0.84410 0.95016 1.44293 1.02663 1.00505 1.85788 1.19497 0.98061 0.98138 1.23734 0.91670 1.25949 1.00110 1.02087 0.96225 1.70138 1.34613 1.24891 1.28609 0.85220 0.78441 0.78265 0.78149 1.21429 1.21689 1.19253 1.20571 0.82713 0.98626 0.92730 1.22255 1.00404 0.93039 1.00940 1.21815 1.02443 0.94761 0.82283 1.21887 1.01457 0.92902 0.99927 1.21100 1.04347 0.95525 0.87951 0.84029 1.23661 0.75674 0.82050 0.85516 1.90698 1.37601 1.27647 1.87609 1.84491 1.72599 1.58314 1.16934 0.93578 0.91642 0.94044 0.88708 0.90976 0.75418 0.92771 0.91638 0.92807 0.97689 0.92557 0.93971 0.98929 0.91614 0.90511 0.91113 0.89050 0.87845 0.86728 0.92041 0.71266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.40 71.98 0.60 -2.54 16 2 C -0.08 -1.24 2.36 -10.72 -0.03 -1.27 16 3 H 0.10 1.35 8.07 -2.39 -0.02 1.34 16 4 C 0.14 2.30 5.82 86.36 0.50 2.80 16 5 N -0.62 -11.81 2.42 -837.75 -2.02 -13.83 16 6 C 0.70 20.16 8.26 179.05 1.48 21.64 16 7 O -0.64 -24.64 15.41 -3.99 -0.06 -24.71 16 8 N -0.73 -19.31 4.99 -457.67 -2.28 -21.59 16 9 C 0.18 6.25 2.46 45.02 0.11 6.36 16 10 C -0.12 -4.47 5.65 30.67 0.17 -4.30 16 11 C 0.15 6.45 6.52 86.36 0.56 7.02 16 12 N -0.61 -31.03 2.99 -699.09 -2.09 -33.12 16 13 C -0.26 -14.55 9.58 84.04 0.81 -13.74 16 14 H 0.07 3.50 7.85 -2.91 -0.02 3.47 16 15 C -0.05 -2.69 5.06 84.86 0.43 -2.26 16 16 N -0.94 -55.17 11.04 21.65 0.24 -54.93 16 17 Si 0.97 44.45 29.57 68.60 2.03 46.48 16 18 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 C 0.18 8.63 5.25 86.36 0.45 9.08 16 22 C -0.13 -4.49 5.55 30.67 0.17 -4.32 16 23 C 0.11 1.10 6.40 86.22 0.55 1.65 16 24 C -0.12 -1.09 4.94 30.53 0.15 -0.94 16 25 C -0.07 -0.69 2.37 -11.51 -0.03 -0.71 16 26 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 27 C 0.49 6.24 7.34 71.24 0.52 6.77 16 28 O -0.55 -11.03 14.51 21.97 0.32 -10.71 16 29 O -0.51 -3.87 13.30 -51.33 -0.68 -4.55 16 30 H 0.05 1.03 5.97 -2.39 -0.01 1.02 16 31 H 0.06 1.48 5.65 -2.39 -0.01 1.46 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.07 1.69 7.03 -2.38 -0.02 1.68 16 35 H 0.41 7.95 6.06 -92.71 -0.56 7.39 16 36 H 0.05 2.22 7.51 -2.39 -0.02 2.21 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 41 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 42 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.07 3.51 6.11 -2.38 -0.01 3.50 16 44 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.09 0.83 5.57 -2.39 -0.01 0.81 16 47 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.11 0.53 8.08 -2.39 -0.02 0.51 16 49 H 0.06 0.81 6.33 -2.39 -0.02 0.80 16 50 H 0.43 0.30 9.10 -74.05 -0.67 -0.37 16 Total: -1.00 -77.59 382.48 1.64 -75.95 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -0.27 Total: 15.77 kcal Atomic # 6 Polarization: 18.78 SS G_CDS: 6.46 Total: 25.24 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -6.16 Total: -123.47 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -0.43 Total: -39.97 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -77.59 1.64 -75.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603442864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.732 kcal (2) G-P(sol) polarization free energy of solvation -77.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds