Wall clock time and date at job start Sat Apr 11 2020 05:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.98864 * 2 1 4 4 C 1.54944 * 111.12616 * 235.80422 * 2 1 3 5 5 O 1.43648 * 105.13590 * 205.59481 * 4 2 1 6 6 C 1.43230 * 109.97043 * 24.42504 * 5 4 2 7 7 H 1.09006 * 109.83373 * 238.68175 * 6 5 4 8 8 C 1.50699 * 109.82827 * 117.80617 * 6 5 4 9 9 O 1.21282 * 120.00189 * 356.57939 * 8 6 5 10 10 N 1.34781 * 120.00177 * 176.58305 * 8 6 5 11 11 C 1.46498 * 120.00390 * 179.97438 * 10 8 6 12 12 C 1.52998 * 109.47472 * 184.95060 * 11 10 8 13 13 N 1.46898 * 112.90940 * 292.59184 * 12 11 10 14 14 C 1.46903 * 110.99881 * 305.92860 * 13 12 11 15 15 C 1.50693 * 109.47086 * 184.68387 * 14 13 12 16 16 O 1.21296 * 119.99968 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99951 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99788 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00371 * 0.02562 * 18 17 15 20 20 C 1.38958 * 119.99780 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99804 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00021 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47247 * 89.99712 * 22 20 18 24 24 H 1.48499 * 109.47206 * 210.00109 * 22 20 18 25 25 H 1.48503 * 109.47035 * 329.99986 * 22 20 18 26 26 C 1.53781 * 113.60986 * 63.84189 * 12 11 10 27 27 C 1.53782 * 87.08253 * 89.11521 * 26 12 11 28 28 C 1.53776 * 87.16964 * 25.39012 * 27 26 12 29 29 C 1.54376 * 107.66973 * 358.24236 * 6 5 4 30 30 H 1.08996 * 109.47003 * 182.74429 * 1 2 3 31 31 H 1.09010 * 109.47003 * 302.74253 * 1 2 3 32 32 H 1.08998 * 109.47232 * 62.74038 * 1 2 3 33 33 H 1.08994 * 110.31019 * 86.67766 * 4 2 1 34 34 H 1.09001 * 110.39069 * 324.54831 * 4 2 1 35 35 H 0.97005 * 119.99505 * 0.02562 * 10 8 6 36 36 H 1.09000 * 109.46610 * 64.95425 * 11 10 8 37 37 H 1.09000 * 109.47181 * 304.95910 * 11 10 8 38 38 H 1.00893 * 111.00088 * 181.97371 * 13 12 11 39 39 H 1.08995 * 109.46627 * 304.69013 * 14 13 12 40 40 H 1.09009 * 109.46613 * 64.68714 * 14 13 12 41 41 H 0.96997 * 119.99792 * 0.02562 * 17 15 14 42 42 H 0.97001 * 119.99837 * 179.97438 * 21 20 18 43 43 H 1.09002 * 113.61624 * 334.56288 * 26 12 11 44 44 H 1.09009 * 113.61256 * 203.66796 * 26 12 11 45 45 H 1.09003 * 113.61259 * 139.97849 * 27 26 12 46 46 H 1.09000 * 113.61504 * 270.79702 * 27 26 12 47 47 H 1.09000 * 113.61791 * 89.15884 * 28 27 26 48 48 H 1.09005 * 113.61200 * 220.05941 * 28 27 26 49 49 H 1.09007 * 110.84629 * 96.87779 * 29 6 5 50 50 H 1.08997 * 110.85418 * 220.49426 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9205 1.0178 0.0000 4 6 2.0885 -0.8123 -1.1954 5 8 3.3902 -1.2511 -0.7753 6 6 3.4519 -1.3001 0.6548 7 1 4.2484 -0.6478 1.0131 8 6 3.7077 -2.7146 1.1073 9 8 3.7649 -3.6110 0.2923 10 7 3.8727 -2.9836 2.4176 11 6 4.1207 -4.3588 2.8575 12 6 4.1472 -4.4083 4.3865 13 7 5.2971 -3.6978 4.9618 14 6 6.5582 -4.1855 4.3874 15 6 7.7174 -3.5181 5.0814 16 8 7.5132 -2.7155 5.9676 17 7 8.9812 -3.8137 4.7180 18 6 10.0358 -3.2069 5.3498 19 1 9.8540 -2.4923 6.1389 20 6 11.3388 -3.5113 4.9748 21 7 11.5599 -4.3805 4.0143 22 14 12.7758 -2.6851 5.8360 23 1 13.1862 -3.5006 7.0072 24 1 13.9160 -2.5653 4.8922 25 1 12.3675 -1.3326 6.2933 26 6 2.8047 -4.0368 5.0381 27 6 2.4360 -5.5267 4.9432 28 6 3.9449 -5.8228 4.9594 29 6 2.0918 -0.8137 1.1995 30 1 -0.3633 -1.0265 0.0492 31 1 -0.3633 0.5559 0.8645 32 1 -0.3633 0.4707 -0.9135 33 1 2.1696 -0.1786 -2.0785 34 1 1.4490 -1.6701 -1.4035 35 1 3.8265 -2.2667 3.0694 36 1 5.0799 -4.6979 2.4664 37 1 3.3273 -5.0076 2.4866 38 1 5.3039 -3.7757 5.9677 39 1 6.6258 -5.2648 4.5232 40 1 6.5876 -3.9506 3.3234 41 1 9.1445 -4.4558 4.0096 42 1 12.4695 -4.5927 3.7523 43 1 2.1817 -3.3924 4.4178 44 1 2.9015 -3.6752 6.0619 45 1 1.9078 -5.9025 5.8195 46 1 1.9480 -5.7970 4.0067 47 1 4.3541 -5.9505 5.9616 48 1 4.2412 -6.6183 4.2757 49 1 1.4431 -1.6580 1.4329 50 1 2.2292 -0.1758 2.0725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673189838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:23 Heat of formation + Delta-G solvation = -101.521612 kcal Electronic energy + Delta-G solvation = -30201.519528 eV Core-core repulsion = 26036.040529 eV Total energy + Delta-G solvation = -4165.478999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.71811 -39.95725 -38.32596 -37.98362 -34.45409 -34.14325 -33.81244 -33.21436 -31.21470 -30.82698 -27.64134 -26.83465 -26.61521 -25.80241 -24.37463 -23.58775 -22.23955 -21.10614 -20.27220 -19.26211 -18.89452 -17.89838 -17.59118 -16.99475 -16.75655 -15.98548 -15.81688 -15.38900 -15.30706 -14.86358 -14.56392 -14.46399 -14.30458 -14.07038 -13.93049 -13.71552 -13.42034 -13.34963 -12.90930 -12.69821 -12.64497 -12.46070 -12.41045 -11.98049 -11.91520 -11.64174 -11.56589 -11.38105 -11.36669 -11.10704 -11.07426 -11.01556 -10.72340 -10.41279 -10.38977 -10.37710 -10.21796 -9.52051 -9.39010 -9.04591 -8.46096 -8.09762 -7.97102 -6.42174 -3.83342 2.56661 2.92388 3.17215 3.26149 3.31835 3.63925 3.88591 3.98762 4.05783 4.25149 4.34299 4.42113 4.45514 4.49800 4.57980 4.70527 4.74922 4.79953 4.97645 5.04586 5.07226 5.21365 5.24205 5.29464 5.30542 5.41154 5.43539 5.46132 5.55154 5.58302 5.62694 5.63902 5.64838 5.74998 5.78447 5.84563 5.90181 5.96772 6.06101 6.16155 6.26587 6.39931 6.63954 7.16499 7.51145 7.54393 7.60769 8.04969 8.21988 8.59541 9.16569 9.53123 10.03752 10.75418 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010974 B = 0.002668 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.959546 B =10493.571105 C =12047.607665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 H 0.091 0.909 4 C 0.052 3.948 5 O -0.350 6.350 6 C 0.065 3.935 7 H 0.110 0.890 8 C 0.499 3.501 9 O -0.529 6.529 10 N -0.713 5.713 11 C 0.148 3.852 12 C 0.080 3.920 13 N -0.652 5.652 14 C 0.048 3.952 15 C 0.440 3.560 16 O -0.587 6.587 17 N -0.562 5.562 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.900 5.900 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.269 1.269 26 C -0.124 4.124 27 C -0.140 4.140 28 C -0.167 4.167 29 C -0.141 4.141 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.408 0.592 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.355 0.645 39 H 0.045 0.955 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.082 0.918 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.512 3.302 -5.145 24.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 H 0.110 0.890 4 C -0.025 4.025 5 O -0.268 6.268 6 C 0.004 3.996 7 H 0.127 0.873 8 C 0.284 3.716 9 O -0.405 6.405 10 N -0.367 5.367 11 C 0.024 3.976 12 C -0.012 4.012 13 N -0.284 5.284 14 C -0.084 4.084 15 C 0.225 3.775 16 O -0.471 6.471 17 N -0.198 5.198 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.541 5.541 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.162 4.162 27 C -0.178 4.178 28 C -0.207 4.207 29 C -0.179 4.179 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.243 0.757 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.177 0.823 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.263 3.616 -5.810 24.249 hybrid contribution 0.965 -0.628 0.843 1.427 sum -22.298 2.988 -4.967 23.039 Atomic orbital electron populations 1.21671 0.93424 1.02398 1.02362 1.22911 0.97059 1.00186 0.94434 0.89042 1.23545 0.84377 0.97395 0.97171 1.88544 1.31796 1.88287 1.18167 1.22633 0.99777 0.93796 0.83411 0.87272 1.20958 0.76928 0.91281 0.82402 1.90709 1.49658 1.47357 1.52789 1.45776 1.72974 1.10519 1.07440 1.21071 1.01988 0.83421 0.91100 1.22579 0.92176 0.92905 0.93561 1.60017 0.99886 1.56978 1.11511 1.21681 0.89508 0.97193 1.00030 1.19787 0.83846 0.86777 0.87059 1.90515 1.84671 1.37953 1.33998 1.41868 1.04248 1.39305 1.34358 1.19691 0.84019 1.22107 1.17170 0.87922 1.25280 0.98890 0.97000 0.96769 1.69614 1.22261 1.33340 1.28892 0.85856 0.80102 0.79630 0.78689 1.20421 1.20889 1.19396 1.23030 0.95166 0.96536 1.01512 1.22752 0.96247 0.96637 1.02133 1.23691 0.96949 0.98171 1.01927 1.23221 0.94713 1.00708 0.99293 0.92242 0.91945 0.92040 0.89309 0.91935 0.75664 0.90986 0.90814 0.82342 0.93651 0.89594 0.77435 0.91812 0.91093 0.89365 0.91252 0.90162 0.89494 0.91120 0.89910 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 9.31 37.16 0.35 -0.39 16 2 C -0.13 -0.86 3.69 -88.29 -0.33 -1.18 16 3 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 4 C 0.05 0.47 7.26 38.18 0.28 0.74 16 5 O -0.35 -4.59 10.56 -54.88 -0.58 -5.17 16 6 C 0.07 0.72 3.94 -27.16 -0.11 0.61 16 7 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 8 C 0.50 6.80 7.03 -10.98 -0.08 6.72 16 9 O -0.53 -9.48 16.52 -14.10 -0.23 -9.71 16 10 N -0.71 -8.33 5.19 -60.30 -0.31 -8.64 16 11 C 0.15 1.80 4.66 -4.04 -0.02 1.78 16 12 C 0.08 0.90 0.67 -130.70 -0.09 0.81 16 13 N -0.65 -9.53 6.13 -100.31 -0.61 -10.14 16 14 C 0.05 0.83 5.52 -4.98 -0.03 0.81 16 15 C 0.44 10.22 7.81 -10.99 -0.09 10.14 16 16 O -0.59 -15.49 15.67 5.54 0.09 -15.40 16 17 N -0.56 -14.28 5.29 -10.96 -0.06 -14.33 16 18 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 22 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 C -0.12 -1.14 7.25 -25.92 -0.19 -1.32 16 27 C -0.14 -1.19 7.72 -25.92 -0.20 -1.39 16 28 C -0.17 -1.70 6.98 -25.83 -0.18 -1.88 16 29 C -0.14 -1.05 6.01 -24.71 -0.15 -1.20 16 30 H 0.06 0.33 8.11 -51.93 -0.42 -0.10 16 31 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.57 8.03 -51.93 -0.42 0.16 16 35 H 0.41 4.22 8.39 -40.82 -0.34 3.88 16 36 H 0.07 1.01 6.39 -51.93 -0.33 0.68 16 37 H 0.07 0.87 7.31 -51.93 -0.38 0.49 16 38 H 0.36 5.49 8.17 -39.30 -0.32 5.17 16 39 H 0.05 0.73 7.80 -51.93 -0.41 0.32 16 40 H 0.09 1.48 6.63 -51.92 -0.34 1.13 16 41 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 42 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.07 0.59 7.86 -51.93 -0.41 0.19 16 44 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.66 7.62 -51.93 -0.40 0.26 16 47 H 0.09 0.91 8.11 -51.93 -0.42 0.49 16 48 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 49 H 0.08 0.62 7.71 -51.93 -0.40 0.22 16 50 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 405.06 15.07 6.10 6.10 Total: -1.00 -33.96 405.06 -9.19 -43.16 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -8.22 Total: 15.83 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -1.06 Total: 6.24 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.26 Total: -57.14 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.73 Total: -30.29 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.96 -9.19 -43.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673189838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.367 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds