Wall clock time and date at job start Sat Apr 11 2020 05:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.98864 * 2 1 4 4 C 1.54944 * 111.12616 * 235.80422 * 2 1 3 5 5 O 1.43648 * 105.13590 * 205.59481 * 4 2 1 6 6 C 1.43230 * 109.97043 * 24.42504 * 5 4 2 7 7 H 1.09006 * 109.83373 * 238.68175 * 6 5 4 8 8 C 1.50699 * 109.82827 * 117.80617 * 6 5 4 9 9 O 1.21282 * 120.00189 * 356.57939 * 8 6 5 10 10 N 1.34781 * 120.00177 * 176.58305 * 8 6 5 11 11 C 1.46498 * 120.00390 * 179.97438 * 10 8 6 12 12 C 1.52998 * 109.47472 * 184.95060 * 11 10 8 13 13 N 1.46898 * 112.90940 * 292.59184 * 12 11 10 14 14 C 1.46903 * 110.99881 * 305.92860 * 13 12 11 15 15 C 1.50693 * 109.47086 * 184.68387 * 14 13 12 16 16 O 1.21296 * 119.99968 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99951 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99788 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00371 * 0.02562 * 18 17 15 20 20 C 1.38958 * 119.99780 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99804 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00021 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47247 * 89.99712 * 22 20 18 24 24 H 1.48499 * 109.47206 * 210.00109 * 22 20 18 25 25 H 1.48503 * 109.47035 * 329.99986 * 22 20 18 26 26 C 1.53781 * 113.60986 * 63.84189 * 12 11 10 27 27 C 1.53782 * 87.08253 * 89.11521 * 26 12 11 28 28 C 1.53776 * 87.16964 * 25.39012 * 27 26 12 29 29 C 1.54376 * 107.66973 * 358.24236 * 6 5 4 30 30 H 1.08996 * 109.47003 * 182.74429 * 1 2 3 31 31 H 1.09010 * 109.47003 * 302.74253 * 1 2 3 32 32 H 1.08998 * 109.47232 * 62.74038 * 1 2 3 33 33 H 1.08994 * 110.31019 * 86.67766 * 4 2 1 34 34 H 1.09001 * 110.39069 * 324.54831 * 4 2 1 35 35 H 0.97005 * 119.99505 * 0.02562 * 10 8 6 36 36 H 1.09000 * 109.46610 * 64.95425 * 11 10 8 37 37 H 1.09000 * 109.47181 * 304.95910 * 11 10 8 38 38 H 1.00893 * 111.00088 * 181.97371 * 13 12 11 39 39 H 1.08995 * 109.46627 * 304.69013 * 14 13 12 40 40 H 1.09009 * 109.46613 * 64.68714 * 14 13 12 41 41 H 0.96997 * 119.99792 * 0.02562 * 17 15 14 42 42 H 0.97001 * 119.99837 * 179.97438 * 21 20 18 43 43 H 1.09002 * 113.61624 * 334.56288 * 26 12 11 44 44 H 1.09009 * 113.61256 * 203.66796 * 26 12 11 45 45 H 1.09003 * 113.61259 * 139.97849 * 27 26 12 46 46 H 1.09000 * 113.61504 * 270.79702 * 27 26 12 47 47 H 1.09000 * 113.61791 * 89.15884 * 28 27 26 48 48 H 1.09005 * 113.61200 * 220.05941 * 28 27 26 49 49 H 1.09007 * 110.84629 * 96.87779 * 29 6 5 50 50 H 1.08997 * 110.85418 * 220.49426 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9205 1.0178 0.0000 4 6 2.0885 -0.8123 -1.1954 5 8 3.3902 -1.2511 -0.7753 6 6 3.4519 -1.3001 0.6548 7 1 4.2484 -0.6478 1.0131 8 6 3.7077 -2.7146 1.1073 9 8 3.7649 -3.6110 0.2923 10 7 3.8727 -2.9836 2.4176 11 6 4.1207 -4.3588 2.8575 12 6 4.1472 -4.4083 4.3865 13 7 5.2971 -3.6978 4.9618 14 6 6.5582 -4.1855 4.3874 15 6 7.7174 -3.5181 5.0814 16 8 7.5132 -2.7155 5.9676 17 7 8.9812 -3.8137 4.7180 18 6 10.0358 -3.2069 5.3498 19 1 9.8540 -2.4923 6.1389 20 6 11.3388 -3.5113 4.9748 21 7 11.5599 -4.3805 4.0143 22 14 12.7758 -2.6851 5.8360 23 1 13.1862 -3.5006 7.0072 24 1 13.9160 -2.5653 4.8922 25 1 12.3675 -1.3326 6.2933 26 6 2.8047 -4.0368 5.0381 27 6 2.4360 -5.5267 4.9432 28 6 3.9449 -5.8228 4.9594 29 6 2.0918 -0.8137 1.1995 30 1 -0.3633 -1.0265 0.0492 31 1 -0.3633 0.5559 0.8645 32 1 -0.3633 0.4707 -0.9135 33 1 2.1696 -0.1786 -2.0785 34 1 1.4490 -1.6701 -1.4035 35 1 3.8265 -2.2667 3.0694 36 1 5.0799 -4.6979 2.4664 37 1 3.3273 -5.0076 2.4866 38 1 5.3039 -3.7757 5.9677 39 1 6.6258 -5.2648 4.5232 40 1 6.5876 -3.9506 3.3234 41 1 9.1445 -4.4558 4.0096 42 1 12.4695 -4.5927 3.7523 43 1 2.1817 -3.3924 4.4178 44 1 2.9015 -3.6752 6.0619 45 1 1.9078 -5.9025 5.8195 46 1 1.9480 -5.7970 4.0067 47 1 4.3541 -5.9505 5.9616 48 1 4.2412 -6.6183 4.2757 49 1 1.4431 -1.6580 1.4329 50 1 2.2292 -0.1758 2.0725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673189838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:22 Heat of formation + Delta-G solvation = -127.117637 kcal Electronic energy + Delta-G solvation = -30202.629454 eV Core-core repulsion = 26036.040529 eV Total energy + Delta-G solvation = -4166.588925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66734 -40.89337 -39.89324 -39.21817 -36.06999 -35.45872 -34.63680 -34.46850 -33.25593 -31.62891 -28.83193 -28.04967 -27.26849 -26.71135 -26.04606 -24.46140 -23.20864 -21.73454 -21.23733 -21.07130 -19.93852 -19.80093 -18.48067 -18.15920 -17.75489 -17.08842 -16.88486 -16.67861 -16.37828 -16.34056 -15.92530 -15.82214 -15.72645 -15.13923 -14.95836 -14.61991 -14.49459 -14.27491 -13.91171 -13.88662 -13.71284 -13.53960 -13.28953 -13.22922 -13.12621 -12.93887 -12.71503 -12.51284 -12.43777 -12.22041 -12.14683 -11.97038 -11.94405 -11.63003 -11.52594 -11.49985 -11.24795 -11.23517 -10.38905 -10.35956 -10.09540 -10.03956 -9.29947 -8.48117 -5.97389 1.36929 1.40730 1.52648 1.53889 1.98237 2.02161 2.27583 2.83545 2.92540 3.18899 3.35857 3.43010 3.56114 3.60307 3.65708 3.77365 3.80204 3.93838 4.01470 4.12638 4.24761 4.35308 4.41964 4.45386 4.48527 4.51879 4.53437 4.66836 4.69784 4.75769 4.81782 4.83117 4.86396 4.90556 5.04581 5.07077 5.10529 5.18696 5.22986 5.36068 5.38663 5.39498 5.43874 5.86282 5.87761 6.07312 6.38808 6.54312 6.56692 7.10032 7.19921 7.53415 8.07217 8.69387 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010974 B = 0.002668 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.959546 B =10493.571105 C =12047.607665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.118 4.118 3 H 0.103 0.897 4 C 0.042 3.958 5 O -0.387 6.387 6 C 0.061 3.939 7 H 0.118 0.882 8 C 0.496 3.504 9 O -0.580 6.580 10 N -0.701 5.701 11 C 0.149 3.851 12 C 0.078 3.922 13 N -0.654 5.654 14 C 0.067 3.933 15 C 0.440 3.560 16 O -0.618 6.618 17 N -0.574 5.574 18 C -0.332 4.332 19 H 0.082 0.918 20 C -0.015 4.015 21 N -0.923 5.923 22 Si 0.994 3.006 23 H -0.270 1.270 24 H -0.273 1.273 25 H -0.271 1.271 26 C -0.115 4.115 27 C -0.128 4.128 28 C -0.169 4.169 29 C -0.134 4.134 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.416 0.584 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.352 0.648 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.394 0.606 42 H 0.277 0.723 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.051 4.072 -4.403 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.136 4.136 3 H 0.121 0.879 4 C -0.034 4.034 5 O -0.305 6.305 6 C 0.000 4.000 7 H 0.136 0.864 8 C 0.282 3.718 9 O -0.460 6.460 10 N -0.354 5.354 11 C 0.025 3.975 12 C -0.013 4.013 13 N -0.287 5.287 14 C -0.066 4.066 15 C 0.227 3.773 16 O -0.505 6.505 17 N -0.211 5.211 18 C -0.462 4.462 19 H 0.100 0.900 20 C -0.215 4.215 21 N -0.563 5.563 22 Si 0.818 3.182 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.153 4.153 27 C -0.166 4.166 28 C -0.209 4.209 29 C -0.171 4.171 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.254 0.746 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.173 0.827 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.227 0.773 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.088 0.912 49 H 0.100 0.900 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -24.832 4.387 -5.054 25.718 hybrid contribution 1.393 -0.887 0.590 1.753 sum -23.439 3.500 -4.464 24.116 Atomic orbital electron populations 1.21662 0.92041 1.02447 1.03384 1.22901 0.98050 1.00084 0.92595 0.87901 1.23765 0.83090 0.97755 0.98814 1.88504 1.33961 1.88603 1.19418 1.22798 1.02185 0.92019 0.82976 0.86440 1.21550 0.75841 0.92030 0.82344 1.90677 1.52158 1.49045 1.54084 1.45719 1.71832 1.10682 1.07154 1.21037 1.01073 0.83736 0.91678 1.22686 0.91874 0.93956 0.92831 1.60022 0.99526 1.57882 1.11262 1.21446 0.88470 0.97360 0.99301 1.20762 0.84494 0.85783 0.86218 1.90484 1.85307 1.39287 1.35411 1.41969 1.04778 1.39702 1.34670 1.19682 0.85531 1.23068 1.17882 0.89999 1.26096 1.00888 0.97301 0.97218 1.69687 1.23130 1.33944 1.29582 0.84905 0.76895 0.78476 0.77944 1.19491 1.19743 1.19535 1.23016 0.93332 0.97405 1.01581 1.22714 0.94962 0.95793 1.03129 1.23694 0.98521 0.97073 1.01604 1.23259 0.92431 1.01117 1.00320 0.92714 0.90712 0.91228 0.88071 0.92686 0.74650 0.93208 0.90154 0.82680 0.92063 0.89331 0.77255 0.91328 0.89903 0.89033 0.89842 0.89544 0.89674 0.91246 0.89958 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.31 71.98 0.67 -0.44 16 2 C -0.12 -1.35 3.69 -9.29 -0.03 -1.38 16 3 H 0.10 0.97 8.14 -2.38 -0.02 0.96 16 4 C 0.04 0.73 7.26 72.65 0.53 1.26 16 5 O -0.39 -10.23 10.56 -130.19 -1.38 -11.61 16 6 C 0.06 1.31 3.94 30.31 0.12 1.43 16 7 H 0.12 2.27 8.14 -2.38 -0.02 2.25 16 8 C 0.50 13.54 7.03 87.66 0.62 14.15 16 9 O -0.58 -21.41 16.52 15.76 0.26 -21.15 16 10 N -0.70 -15.85 5.19 -463.06 -2.40 -18.25 16 11 C 0.15 3.53 4.66 86.38 0.40 3.93 16 12 C 0.08 1.64 0.67 4.11 0.00 1.65 16 13 N -0.65 -18.58 6.13 -471.26 -2.89 -21.47 16 14 C 0.07 2.29 5.52 85.55 0.47 2.76 16 15 C 0.44 20.75 7.81 87.65 0.68 21.43 16 16 O -0.62 -33.15 15.67 -3.08 -0.05 -33.20 16 17 N -0.57 -29.86 5.29 -306.98 -1.62 -31.48 16 18 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 19 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 20 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 21 N -0.92 -50.85 13.05 21.67 0.28 -50.56 16 22 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 C -0.12 -1.81 7.25 31.12 0.23 -1.59 16 27 C -0.13 -1.83 7.72 31.12 0.24 -1.59 16 28 C -0.17 -3.14 6.98 31.18 0.22 -2.93 16 29 C -0.13 -1.72 6.01 31.90 0.19 -1.53 16 30 H 0.05 0.50 8.11 -2.39 -0.02 0.48 16 31 H 0.07 0.44 8.14 -2.38 -0.02 0.43 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.02 8.03 -2.39 -0.02 1.00 16 35 H 0.42 8.00 8.39 -92.70 -0.78 7.22 16 36 H 0.05 1.41 6.39 -2.39 -0.02 1.40 16 37 H 0.08 1.82 7.31 -2.39 -0.02 1.81 16 38 H 0.35 10.58 8.17 -89.70 -0.73 9.85 16 39 H 0.06 1.93 7.80 -2.39 -0.02 1.91 16 40 H 0.09 3.05 6.63 -2.38 -0.02 3.04 16 41 H 0.39 19.87 7.90 -92.71 -0.73 19.14 16 42 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 43 H 0.08 1.13 7.86 -2.39 -0.02 1.11 16 44 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 46 H 0.09 1.17 7.62 -2.39 -0.02 1.15 16 47 H 0.08 1.65 8.11 -2.39 -0.02 1.63 16 48 H 0.07 1.32 8.10 -2.38 -0.02 1.30 16 49 H 0.08 1.08 7.71 -2.38 -0.02 1.07 16 50 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -75.18 405.06 -1.42 -76.61 By element: Atomic # 1 Polarization: 48.47 SS G_CDS: -1.27 Total: 47.20 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 5.62 Total: 18.66 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -6.63 Total: -121.76 kcal Atomic # 8 Polarization: -64.79 SS G_CDS: -1.16 Total: -65.96 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -75.18 -1.42 -76.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673189838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.512 kcal (2) G-P(sol) polarization free energy of solvation -75.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds