Wall clock time and date at job start Sat Apr 11 2020 05:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 110.43698 * 2 1 4 4 C 1.54100 * 110.60096 * 122.62150 * 2 1 3 5 5 O 1.43740 * 107.29350 * 116.70432 * 4 2 1 6 6 C 1.44380 * 106.97913 * 26.51319 * 5 4 2 7 7 H 1.08998 * 110.61934 * 78.43738 * 6 5 4 8 8 C 1.50695 * 110.61808 * 201.44364 * 6 5 4 9 9 O 1.21277 * 120.00381 * 359.06316 * 8 6 5 10 10 N 1.34779 * 119.99691 * 179.07429 * 8 6 5 11 11 C 1.46500 * 119.99853 * 180.02562 * 10 8 6 12 12 C 1.52995 * 109.47127 * 177.11938 * 11 10 8 13 13 N 1.46904 * 112.85519 * 50.16450 * 12 11 10 14 14 C 1.46898 * 110.99700 * 59.32724 * 13 12 11 15 15 C 1.50699 * 109.46911 * 174.63786 * 14 13 12 16 16 O 1.21289 * 120.00099 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99900 * 180.02562 * 15 14 13 18 18 C 1.37095 * 120.00049 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99663 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00307 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99890 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00363 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47070 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47286 * 120.00340 * 22 20 18 25 25 H 1.48500 * 109.47362 * 240.00381 * 22 20 18 26 26 C 1.53786 * 113.61313 * 278.85872 * 12 11 10 27 27 C 1.53785 * 87.08267 * 220.01829 * 26 12 11 28 28 C 1.53782 * 113.61669 * 181.36321 * 12 11 10 29 29 C 1.54811 * 110.48728 * 237.45442 * 2 1 3 30 30 H 1.08996 * 109.46553 * 182.54764 * 1 2 3 31 31 H 1.08999 * 109.46747 * 302.54512 * 1 2 3 32 32 H 1.08998 * 109.46987 * 62.54543 * 1 2 3 33 33 H 1.09004 * 109.88042 * 236.12846 * 4 2 1 34 34 H 1.09004 * 109.87889 * 357.12750 * 4 2 1 35 35 H 0.96995 * 120.00019 * 359.97438 * 10 8 6 36 36 H 1.09007 * 109.46551 * 297.11171 * 11 10 8 37 37 H 1.09000 * 109.47490 * 57.11329 * 11 10 8 38 38 H 1.00898 * 110.99692 * 295.37641 * 13 12 11 39 39 H 1.09002 * 109.47337 * 294.63317 * 14 13 12 40 40 H 1.08996 * 109.47231 * 54.63474 * 14 13 12 41 41 H 0.97003 * 119.99953 * 359.97438 * 17 15 14 42 42 H 0.96991 * 120.00438 * 179.97438 * 21 20 18 43 43 H 1.08998 * 113.61505 * 334.56997 * 26 12 11 44 44 H 1.08995 * 113.61496 * 105.47065 * 26 12 11 45 45 H 1.09000 * 113.61157 * 270.88490 * 27 26 12 46 46 H 1.09001 * 113.61334 * 139.97662 * 27 26 12 47 47 H 1.09003 * 113.61197 * 254.52785 * 28 12 11 48 48 H 1.08996 * 113.61503 * 25.34645 * 28 12 11 49 49 H 1.09000 * 110.90812 * 338.50796 * 29 2 1 50 50 H 1.08994 * 110.90597 * 102.11538 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9107 1.0214 0.0000 4 6 2.0723 -0.7776 1.2149 5 8 2.7999 -1.9089 0.7081 6 6 3.2682 -1.5527 -0.6104 7 1 4.1467 -0.9107 -0.5453 8 6 3.5708 -2.7885 -1.4179 9 8 3.4242 -3.8865 -0.9242 10 7 4.0047 -2.6735 -2.6888 11 6 4.2983 -3.8749 -3.4740 12 6 4.7007 -3.4706 -4.8936 13 7 5.7422 -2.4349 -4.9183 14 6 6.9565 -2.8929 -4.2301 15 6 8.0434 -1.8612 -4.3890 16 8 7.8278 -0.8446 -5.0144 17 7 9.2554 -2.0686 -3.8369 18 6 10.2443 -1.1303 -3.9819 19 1 10.0523 -0.2251 -4.5388 20 6 11.4936 -1.3439 -3.4124 21 7 11.7273 -2.4456 -2.7352 22 14 12.8413 -0.0657 -3.6104 23 1 12.3283 1.0744 -4.4118 24 1 13.2638 0.4197 -2.2721 25 1 14.0034 -0.6752 -4.3054 26 6 3.5039 -3.1652 -5.8098 27 6 4.2737 -3.8908 -6.9260 28 6 4.9991 -4.6662 -5.8136 29 6 2.0719 -0.7802 -1.2225 30 1 -0.3632 -1.0266 0.0457 31 1 -0.3633 0.5529 0.8663 32 1 -0.3633 0.4738 -0.9119 33 1 2.7375 -0.1394 1.7967 34 1 1.2444 -1.1156 1.8382 35 1 4.1217 -1.7954 -3.0837 36 1 5.1164 -4.4233 -3.0068 37 1 3.4122 -4.5085 -3.5140 38 1 5.4038 -1.5723 -4.5190 39 1 6.7422 -3.0348 -3.1708 40 1 7.2856 -3.8372 -4.6638 41 1 9.4279 -2.8819 -3.3371 42 1 12.5995 -2.5949 -2.3379 43 1 2.5858 -3.6717 -5.5122 44 1 3.3593 -2.1017 -5.9994 45 1 4.9291 -3.2365 -7.5008 46 1 3.6423 -4.5182 -7.5551 47 1 6.0617 -4.8144 -6.0061 48 1 4.4910 -5.5835 -5.5161 49 1 1.3206 -1.4690 -1.6085 50 1 2.4082 -0.0967 -2.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673189839.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:25 Heat of formation + Delta-G solvation = -97.299558 kcal Electronic energy + Delta-G solvation = -30335.047811 eV Core-core repulsion = 26169.751895 eV Total energy + Delta-G solvation = -4165.295917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.71216 -39.88958 -38.48585 -37.96735 -34.75604 -34.08052 -33.82931 -33.05207 -31.22072 -30.86376 -28.00140 -26.75778 -26.60291 -25.70110 -24.29421 -23.84837 -22.15475 -20.89938 -20.51084 -19.26854 -18.79066 -17.91520 -17.81912 -17.20934 -16.41846 -16.09158 -15.65474 -15.40660 -15.25999 -15.09439 -14.78015 -14.54315 -14.29109 -14.22638 -13.96421 -13.79933 -13.48551 -13.11649 -13.07779 -12.93068 -12.71148 -12.36507 -12.28665 -12.04712 -11.60999 -11.60410 -11.56282 -11.44151 -11.34796 -11.14787 -11.07921 -10.89036 -10.60662 -10.36051 -10.26225 -10.20897 -10.09597 -9.72365 -9.53692 -9.22231 -8.55955 -8.13477 -7.98185 -6.43162 -3.84325 2.44980 2.69052 3.14936 3.25720 3.32438 3.70301 3.87523 3.94821 4.03909 4.22666 4.27646 4.40175 4.47159 4.60935 4.63538 4.70002 4.75518 4.84567 4.87387 5.05121 5.14198 5.21984 5.23631 5.28114 5.31477 5.36484 5.42375 5.49242 5.55688 5.60047 5.61227 5.62205 5.70845 5.80996 5.82357 5.89733 5.91250 6.03308 6.15757 6.21835 6.29671 6.39588 6.48289 7.11429 7.27167 7.48716 7.53655 8.04158 8.05986 8.58922 9.16046 9.52346 10.03230 10.74526 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008951 B = 0.003025 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.266473 B = 9254.879381 C =11265.988340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 H 0.088 0.912 4 C 0.046 3.954 5 O -0.347 6.347 6 C 0.057 3.943 7 H 0.099 0.901 8 C 0.521 3.479 9 O -0.520 6.520 10 N -0.723 5.723 11 C 0.100 3.900 12 C 0.074 3.926 13 N -0.633 5.633 14 C 0.048 3.952 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.900 5.900 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.124 4.124 29 C -0.140 4.140 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.398 0.602 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.345 0.655 39 H 0.046 0.954 40 H 0.088 0.912 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.671 0.488 1.579 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 H 0.107 0.893 4 C -0.031 4.031 5 O -0.265 6.265 6 C -0.004 4.004 7 H 0.117 0.883 8 C 0.306 3.694 9 O -0.394 6.394 10 N -0.378 5.378 11 C -0.026 4.026 12 C -0.018 4.018 13 N -0.265 5.265 14 C -0.084 4.084 15 C 0.227 3.773 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.542 5.542 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.164 4.164 27 C -0.163 4.163 28 C -0.163 4.163 29 C -0.178 4.178 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.233 0.767 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.165 0.835 39 H 0.064 0.936 40 H 0.106 0.894 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.109 0.891 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.102 0.898 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.469 -0.060 1.114 21.498 hybrid contribution 0.753 0.746 1.073 1.508 sum -20.715 0.685 2.187 20.842 Atomic orbital electron populations 1.21824 0.93638 1.02388 1.02217 1.22549 0.97351 1.00260 0.94373 0.89330 1.23360 0.95911 0.87910 0.95876 1.89021 1.71920 1.36877 1.28664 1.22999 0.98649 0.93967 0.84762 0.88301 1.20120 0.77097 0.90433 0.81743 1.90729 1.50880 1.27750 1.70081 1.45825 1.68593 1.10305 1.13042 1.22061 1.01352 0.87280 0.91867 1.22456 0.93423 0.94895 0.91072 1.60058 1.03056 1.04211 1.59207 1.21691 0.90822 0.99116 0.96797 1.19751 0.83913 0.88719 0.84939 1.90520 1.81613 1.29635 1.44972 1.41875 1.09777 1.20844 1.47460 1.19733 0.90138 1.01073 1.31924 0.87875 1.25272 0.98630 0.97529 0.96528 1.69620 1.24137 1.25336 1.35060 0.85807 0.80242 0.80318 0.78019 1.19215 1.20762 1.20730 1.22979 0.95597 1.01541 0.96249 1.22665 0.98823 0.98909 0.95930 1.22933 1.02029 0.95576 0.95728 1.23216 0.97061 0.99181 0.98363 0.92148 0.92166 0.92101 0.91910 0.89345 0.76659 0.91137 0.90777 0.83510 0.93601 0.89352 0.77483 0.91879 0.89953 0.90868 0.89133 0.91992 0.90409 0.89836 0.89768 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.93 37.16 0.33 -0.51 16 2 C -0.13 -0.88 3.64 -89.09 -0.32 -1.21 16 3 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 4 C 0.05 0.41 7.37 37.73 0.28 0.69 16 5 O -0.35 -4.58 10.80 -54.30 -0.59 -5.17 16 6 C 0.06 0.64 3.76 -26.83 -0.10 0.54 16 7 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 8 C 0.52 7.04 7.21 -10.99 -0.08 6.96 16 9 O -0.52 -9.28 16.57 -13.51 -0.22 -9.50 16 10 N -0.72 -8.07 5.43 -60.30 -0.33 -8.40 16 11 C 0.10 1.16 4.44 -4.04 -0.02 1.14 16 12 C 0.07 0.82 0.69 -130.79 -0.09 0.73 16 13 N -0.63 -9.05 5.68 -100.39 -0.57 -9.62 16 14 C 0.05 0.81 5.61 -4.98 -0.03 0.78 16 15 C 0.44 10.08 7.83 -10.98 -0.09 9.99 16 16 O -0.58 -15.21 15.89 5.55 0.09 -15.13 16 17 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 18 C -0.30 -8.25 9.68 -14.94 -0.14 -8.40 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 22 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 C -0.13 -1.19 7.44 -25.91 -0.19 -1.38 16 27 C -0.13 -1.27 8.00 -25.92 -0.21 -1.48 16 28 C -0.12 -1.32 7.17 -25.92 -0.19 -1.51 16 29 C -0.14 -1.10 6.12 -24.72 -0.15 -1.26 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.69 7.70 -51.93 -0.40 0.29 16 35 H 0.40 3.78 7.04 -40.82 -0.29 3.50 16 36 H 0.07 0.94 7.39 -51.92 -0.38 0.55 16 37 H 0.07 0.84 7.97 -51.93 -0.41 0.43 16 38 H 0.34 4.85 7.20 -39.29 -0.28 4.56 16 39 H 0.05 0.74 7.12 -51.93 -0.37 0.37 16 40 H 0.09 1.41 6.89 -51.93 -0.36 1.06 16 41 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.08 0.68 7.98 -51.93 -0.41 0.27 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.94 7.07 -51.93 -0.37 0.57 16 48 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 49 H 0.08 0.70 7.78 -51.93 -0.40 0.30 16 50 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 403.98 15.07 6.09 6.09 Total: -1.00 -34.04 403.98 -9.14 -43.18 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -8.16 Total: 15.01 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -1.09 Total: 5.59 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.23 Total: -55.97 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.72 Total: -29.80 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.04 -9.14 -43.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673189839.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.119 kcal (2) G-P(sol) polarization free energy of solvation -34.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds