Wall clock time and date at job start Sat Apr 11 2020 05:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 110.43698 * 2 1 4 4 C 1.54100 * 110.60096 * 122.62150 * 2 1 3 5 5 O 1.43740 * 107.29350 * 116.70432 * 4 2 1 6 6 C 1.44380 * 106.97913 * 26.51319 * 5 4 2 7 7 H 1.08998 * 110.61934 * 78.43738 * 6 5 4 8 8 C 1.50695 * 110.61808 * 201.44364 * 6 5 4 9 9 O 1.21277 * 120.00381 * 359.06316 * 8 6 5 10 10 N 1.34779 * 119.99691 * 179.07429 * 8 6 5 11 11 C 1.46500 * 119.99853 * 180.02562 * 10 8 6 12 12 C 1.52995 * 109.47127 * 177.11938 * 11 10 8 13 13 N 1.46904 * 112.85519 * 50.16450 * 12 11 10 14 14 C 1.46898 * 110.99700 * 59.32724 * 13 12 11 15 15 C 1.50699 * 109.46911 * 174.63786 * 14 13 12 16 16 O 1.21289 * 120.00099 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99900 * 180.02562 * 15 14 13 18 18 C 1.37095 * 120.00049 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99663 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00307 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99890 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00363 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47070 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47286 * 120.00340 * 22 20 18 25 25 H 1.48500 * 109.47362 * 240.00381 * 22 20 18 26 26 C 1.53786 * 113.61313 * 278.85872 * 12 11 10 27 27 C 1.53785 * 87.08267 * 220.01829 * 26 12 11 28 28 C 1.53782 * 113.61669 * 181.36321 * 12 11 10 29 29 C 1.54811 * 110.48728 * 237.45442 * 2 1 3 30 30 H 1.08996 * 109.46553 * 182.54764 * 1 2 3 31 31 H 1.08999 * 109.46747 * 302.54512 * 1 2 3 32 32 H 1.08998 * 109.46987 * 62.54543 * 1 2 3 33 33 H 1.09004 * 109.88042 * 236.12846 * 4 2 1 34 34 H 1.09004 * 109.87889 * 357.12750 * 4 2 1 35 35 H 0.96995 * 120.00019 * 359.97438 * 10 8 6 36 36 H 1.09007 * 109.46551 * 297.11171 * 11 10 8 37 37 H 1.09000 * 109.47490 * 57.11329 * 11 10 8 38 38 H 1.00898 * 110.99692 * 295.37641 * 13 12 11 39 39 H 1.09002 * 109.47337 * 294.63317 * 14 13 12 40 40 H 1.08996 * 109.47231 * 54.63474 * 14 13 12 41 41 H 0.97003 * 119.99953 * 359.97438 * 17 15 14 42 42 H 0.96991 * 120.00438 * 179.97438 * 21 20 18 43 43 H 1.08998 * 113.61505 * 334.56997 * 26 12 11 44 44 H 1.08995 * 113.61496 * 105.47065 * 26 12 11 45 45 H 1.09000 * 113.61157 * 270.88490 * 27 26 12 46 46 H 1.09001 * 113.61334 * 139.97662 * 27 26 12 47 47 H 1.09003 * 113.61197 * 254.52785 * 28 12 11 48 48 H 1.08996 * 113.61503 * 25.34645 * 28 12 11 49 49 H 1.09000 * 110.90812 * 338.50796 * 29 2 1 50 50 H 1.08994 * 110.90597 * 102.11538 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9107 1.0214 0.0000 4 6 2.0723 -0.7776 1.2149 5 8 2.7999 -1.9089 0.7081 6 6 3.2682 -1.5527 -0.6104 7 1 4.1467 -0.9107 -0.5453 8 6 3.5708 -2.7885 -1.4179 9 8 3.4242 -3.8865 -0.9242 10 7 4.0047 -2.6735 -2.6888 11 6 4.2983 -3.8749 -3.4740 12 6 4.7007 -3.4706 -4.8936 13 7 5.7422 -2.4349 -4.9183 14 6 6.9565 -2.8929 -4.2301 15 6 8.0434 -1.8612 -4.3890 16 8 7.8278 -0.8446 -5.0144 17 7 9.2554 -2.0686 -3.8369 18 6 10.2443 -1.1303 -3.9819 19 1 10.0523 -0.2251 -4.5388 20 6 11.4936 -1.3439 -3.4124 21 7 11.7273 -2.4456 -2.7352 22 14 12.8413 -0.0657 -3.6104 23 1 12.3283 1.0744 -4.4118 24 1 13.2638 0.4197 -2.2721 25 1 14.0034 -0.6752 -4.3054 26 6 3.5039 -3.1652 -5.8098 27 6 4.2737 -3.8908 -6.9260 28 6 4.9991 -4.6662 -5.8136 29 6 2.0719 -0.7802 -1.2225 30 1 -0.3632 -1.0266 0.0457 31 1 -0.3633 0.5529 0.8663 32 1 -0.3633 0.4738 -0.9119 33 1 2.7375 -0.1394 1.7967 34 1 1.2444 -1.1156 1.8382 35 1 4.1217 -1.7954 -3.0837 36 1 5.1164 -4.4233 -3.0068 37 1 3.4122 -4.5085 -3.5140 38 1 5.4038 -1.5723 -4.5190 39 1 6.7422 -3.0348 -3.1708 40 1 7.2856 -3.8372 -4.6638 41 1 9.4279 -2.8819 -3.3371 42 1 12.5995 -2.5949 -2.3379 43 1 2.5858 -3.6717 -5.5122 44 1 3.3593 -2.1017 -5.9994 45 1 4.9291 -3.2365 -7.5008 46 1 3.6423 -4.5182 -7.5551 47 1 6.0617 -4.8144 -6.0061 48 1 4.4910 -5.5835 -5.5161 49 1 1.3206 -1.4690 -1.6085 50 1 2.4082 -0.0967 -2.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673189839.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:25 Heat of formation + Delta-G solvation = -122.732663 kcal Electronic energy + Delta-G solvation = -30336.150673 eV Core-core repulsion = 26169.751895 eV Total energy + Delta-G solvation = -4166.398779 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66518 -40.84312 -39.84963 -39.36330 -36.05311 -35.73018 -34.56504 -34.34132 -33.23031 -31.68599 -29.07015 -28.08048 -27.24666 -26.74487 -25.79336 -24.83381 -23.05987 -21.66220 -21.36877 -21.05472 -19.91988 -19.74278 -18.77344 -18.01463 -17.77208 -17.17264 -16.90909 -16.58316 -16.37272 -16.21657 -16.11351 -15.73531 -15.65821 -15.28001 -15.16076 -14.90320 -14.60729 -14.23743 -13.98876 -13.92252 -13.64608 -13.51549 -13.49585 -13.14120 -13.06542 -12.84172 -12.78800 -12.44196 -12.38911 -12.15672 -12.11314 -11.97443 -11.76064 -11.69867 -11.51823 -11.45551 -11.11633 -10.96218 -10.67240 -10.35617 -10.23939 -10.02011 -9.41323 -8.46983 -5.95928 1.36252 1.41604 1.41906 1.55827 1.77398 2.04222 2.27773 2.76926 2.97380 3.20178 3.33621 3.41946 3.53001 3.59828 3.74320 3.80225 3.83587 3.97728 4.03554 4.04317 4.20790 4.23412 4.36848 4.45510 4.52638 4.54311 4.55057 4.65072 4.68317 4.71163 4.79162 4.87679 4.89320 4.94933 5.03144 5.13675 5.14736 5.16166 5.22863 5.34445 5.39420 5.40844 5.52420 5.73715 5.87984 6.07060 6.30282 6.39142 6.58502 7.05768 7.12025 7.55440 8.09701 8.70716 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008951 B = 0.003025 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.266473 B = 9254.879381 C =11265.988340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 H 0.106 0.894 4 C 0.038 3.962 5 O -0.386 6.386 6 C 0.053 3.947 7 H 0.109 0.891 8 C 0.518 3.482 9 O -0.571 6.571 10 N -0.710 5.710 11 C 0.104 3.896 12 C 0.076 3.924 13 N -0.640 5.640 14 C 0.067 3.933 15 C 0.442 3.558 16 O -0.616 6.616 17 N -0.575 5.575 18 C -0.330 4.330 19 H 0.082 0.918 20 C -0.015 4.015 21 N -0.923 5.923 22 Si 0.993 3.007 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.272 1.272 26 C -0.113 4.113 27 C -0.124 4.124 28 C -0.126 4.126 29 C -0.133 4.133 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.409 0.591 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.346 0.654 39 H 0.055 0.945 40 H 0.100 0.900 41 H 0.394 0.606 42 H 0.277 0.723 43 H 0.103 0.897 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.060 0.940 48 H 0.103 0.897 49 H 0.078 0.922 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.884 1.315 1.078 22.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.139 4.139 3 H 0.124 0.876 4 C -0.039 4.039 5 O -0.305 6.305 6 C -0.008 4.008 7 H 0.126 0.874 8 C 0.304 3.696 9 O -0.449 6.449 10 N -0.364 5.364 11 C -0.022 4.022 12 C -0.016 4.016 13 N -0.272 5.272 14 C -0.065 4.065 15 C 0.229 3.771 16 O -0.502 6.502 17 N -0.213 5.213 18 C -0.459 4.459 19 H 0.100 0.900 20 C -0.215 4.215 21 N -0.564 5.564 22 Si 0.817 3.183 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.198 1.198 26 C -0.150 4.150 27 C -0.162 4.162 28 C -0.164 4.164 29 C -0.171 4.171 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.245 0.755 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.166 0.834 39 H 0.073 0.927 40 H 0.118 0.882 41 H 0.227 0.773 42 H 0.086 0.914 43 H 0.121 0.879 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.100 0.900 47 H 0.079 0.921 48 H 0.122 0.878 49 H 0.097 0.903 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -22.695 0.778 0.592 22.716 hybrid contribution 1.082 0.466 1.211 1.689 sum -21.613 1.243 1.803 21.723 Atomic orbital electron populations 1.21813 0.92751 1.02011 1.03265 1.22566 0.98026 1.00569 0.92748 0.87578 1.23591 0.96072 0.87315 0.96891 1.88981 1.72692 1.39104 1.29724 1.23142 1.00366 0.93015 0.84262 0.87378 1.20640 0.76177 0.90577 0.82159 1.90698 1.53315 1.29709 1.71211 1.45746 1.67387 1.10806 1.12444 1.22021 1.01027 0.87374 0.91732 1.22513 0.93453 0.94515 0.91163 1.60026 1.03142 1.05225 1.58808 1.21439 0.90052 0.97267 0.97784 1.20730 0.84232 0.89126 0.82963 1.90490 1.82281 1.31435 1.45996 1.41967 1.10358 1.20664 1.48262 1.19702 0.91680 1.01364 1.33168 0.90033 1.26065 1.00232 0.99411 0.95765 1.69689 1.24911 1.26505 1.35294 0.84865 0.77407 0.77787 0.78264 1.19470 1.19724 1.19782 1.22970 0.95334 1.01933 0.94778 1.22611 0.98742 0.98795 0.96029 1.23016 1.01394 0.96207 0.95784 1.23240 0.95497 0.99118 0.99203 0.93250 0.91102 0.91083 0.91105 0.88867 0.75464 0.92965 0.90002 0.83355 0.92669 0.88221 0.77284 0.91386 0.87891 0.90661 0.91214 0.90015 0.92086 0.87843 0.90285 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.93 71.98 0.64 -0.73 16 2 C -0.12 -1.43 3.64 -9.80 -0.04 -1.47 16 3 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 4 C 0.04 0.63 7.37 72.35 0.53 1.17 16 5 O -0.39 -10.26 10.80 -130.75 -1.41 -11.68 16 6 C 0.05 1.14 3.76 30.53 0.11 1.26 16 7 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 8 C 0.52 13.89 7.21 87.65 0.63 14.52 16 9 O -0.57 -20.81 16.57 15.21 0.25 -20.56 16 10 N -0.71 -15.12 5.43 -463.07 -2.51 -17.63 16 11 C 0.10 2.28 4.44 86.38 0.38 2.67 16 12 C 0.08 1.55 0.69 4.05 0.00 1.55 16 13 N -0.64 -17.66 5.68 -471.54 -2.68 -20.34 16 14 C 0.07 2.23 5.61 85.56 0.48 2.71 16 15 C 0.44 20.42 7.83 87.66 0.69 21.11 16 16 O -0.62 -32.58 15.89 -3.06 -0.05 -32.63 16 17 N -0.58 -29.37 5.29 -306.98 -1.62 -30.99 16 18 C -0.33 -18.55 9.68 84.04 0.81 -17.74 16 19 H 0.08 4.87 7.16 -2.91 -0.02 4.84 16 20 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 21 N -0.92 -50.31 13.05 21.66 0.28 -50.03 16 22 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 26 C -0.11 -1.82 7.44 31.12 0.23 -1.59 16 27 C -0.12 -2.24 8.00 31.12 0.25 -1.99 16 28 C -0.13 -2.45 7.17 31.12 0.22 -2.23 16 29 C -0.13 -1.84 6.12 31.90 0.20 -1.65 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 1.04 8.14 -2.38 -0.02 1.03 16 34 H 0.09 1.42 7.70 -2.38 -0.02 1.40 16 35 H 0.41 7.11 7.04 -92.71 -0.65 6.46 16 36 H 0.05 1.36 7.39 -2.38 -0.02 1.34 16 37 H 0.08 1.72 7.97 -2.39 -0.02 1.70 16 38 H 0.35 9.34 7.20 -89.70 -0.65 8.69 16 39 H 0.06 1.76 7.12 -2.39 -0.02 1.74 16 40 H 0.10 3.14 6.89 -2.39 -0.02 3.12 16 41 H 0.39 19.50 7.90 -92.71 -0.73 18.77 16 42 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 43 H 0.10 1.32 7.98 -2.39 -0.02 1.30 16 44 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.06 1.41 7.07 -2.39 -0.02 1.39 16 48 H 0.10 1.62 8.10 -2.39 -0.02 1.60 16 49 H 0.08 1.19 7.78 -2.39 -0.02 1.18 16 50 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -75.27 403.98 -1.15 -76.42 By element: Atomic # 1 Polarization: 46.41 SS G_CDS: -1.06 Total: 45.35 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 5.62 Total: 17.24 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -6.53 Total: -118.99 kcal Atomic # 8 Polarization: -63.65 SS G_CDS: -1.21 Total: -64.86 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -75.27 -1.15 -76.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673189839.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.309 kcal (2) G-P(sol) polarization free energy of solvation -75.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds