Wall clock time and date at job start Sat Apr 11 2020 05:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99719 * 2 1 4 4 O 1.42899 * 109.47157 * 134.99904 * 3 2 1 5 5 C 1.42894 * 114.00094 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47309 * 180.02562 * 5 4 3 7 7 O 1.21278 * 119.99789 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00259 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00242 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.57605 * 34.84057 * 9 8 6 11 11 C 1.53121 * 109.52025 * 274.68206 * 9 8 6 12 12 C 1.53042 * 109.27772 * 182.43914 * 11 9 8 13 13 N 1.46843 * 109.52356 * 59.17896 * 12 11 9 14 14 C 1.46899 * 111.00176 * 174.15814 * 13 12 11 15 15 C 1.50694 * 109.47455 * 288.14773 * 14 13 12 16 16 O 1.21301 * 119.99855 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00282 * 179.97438 * 15 14 13 18 18 C 1.37104 * 120.00057 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00080 * 359.97438 * 18 17 15 20 20 C 1.38949 * 119.99717 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99831 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00196 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46915 * 90.00314 * 22 20 18 24 24 H 1.48501 * 109.47174 * 210.00175 * 22 20 18 25 25 H 1.48493 * 109.47230 * 330.00214 * 22 20 18 26 26 C 1.46847 * 111.19946 * 298.25812 * 13 12 11 27 27 H 1.08991 * 109.46538 * 301.72627 * 26 13 12 28 28 C 1.52997 * 109.46337 * 181.74522 * 26 13 12 29 29 C 1.53037 * 109.52118 * 61.74250 * 26 13 12 30 30 H 1.07994 * 120.00063 * 359.97438 * 1 2 3 31 31 H 1.07996 * 119.99361 * 180.02562 * 1 2 3 32 32 H 1.07994 * 120.00063 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47081 * 15.00231 * 3 2 1 34 34 H 1.09004 * 109.47204 * 255.00032 * 3 2 1 35 35 H 1.08998 * 109.47668 * 59.99966 * 5 4 3 36 36 H 1.09007 * 109.47069 * 299.99958 * 5 4 3 37 37 H 0.97008 * 120.00019 * 0.02562 * 8 6 5 38 38 H 1.09001 * 109.50726 * 302.38021 * 11 9 8 39 39 H 1.09008 * 109.50082 * 62.46017 * 11 9 8 40 40 H 1.09001 * 109.45944 * 299.16296 * 12 11 9 41 41 H 1.08998 * 109.46345 * 179.19697 * 12 11 9 42 42 H 1.08999 * 109.47463 * 168.14063 * 14 13 12 43 43 H 1.09004 * 109.46675 * 48.14507 * 14 13 12 44 44 H 0.96995 * 119.99976 * 0.27264 * 17 15 14 45 45 H 0.96997 * 120.00302 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.47260 * 67.44591 * 28 26 13 47 47 H 1.09003 * 109.47617 * 187.45221 * 28 26 13 48 48 H 1.09005 * 109.47438 * 307.45129 * 28 26 13 49 49 H 1.09003 * 109.50626 * 60.75930 * 29 26 13 50 50 H 1.09005 * 109.50543 * 180.88113 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9076 2.4354 1.0329 6 6 4.9940 2.2570 2.0620 7 8 5.0903 1.2102 2.6668 8 7 5.8592 3.2603 2.3095 9 6 6.9156 3.0866 3.3095 10 1 7.2641 2.0539 3.2970 11 6 6.3661 3.4245 4.6982 12 6 7.4895 3.3002 5.7301 13 7 8.5814 4.2173 5.3796 14 6 9.6162 4.2267 6.4222 15 6 9.0941 4.9413 7.6419 16 8 7.9705 5.3983 7.6424 17 7 9.8755 5.0725 8.7321 18 6 9.4002 5.7222 9.8420 19 1 8.3998 6.1292 9.8424 20 6 10.2060 5.8580 10.9658 21 7 9.7507 6.4812 12.0294 22 14 11.9366 5.1548 10.9647 23 1 12.8873 6.1803 10.4652 24 1 12.3125 4.7628 12.3468 25 1 11.9857 3.9622 10.0813 26 6 9.1564 3.8827 4.0705 27 1 9.5226 2.8563 4.0863 28 6 10.3158 4.8331 3.7650 29 6 8.0828 4.0245 2.9891 30 1 -0.5400 0.9353 0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3855 2.1161 0.2660 34 1 2.4755 1.4869 -0.9927 35 1 3.2677 3.2696 1.3205 36 1 4.3579 2.6410 0.0617 37 1 5.7824 4.0974 1.8255 38 1 5.9821 4.4447 4.6994 39 1 5.5620 2.7327 4.9496 40 1 7.8635 2.2764 5.7381 41 1 7.1050 3.5540 6.7179 42 1 10.5019 4.7419 6.0505 43 1 9.8760 3.2013 6.6853 44 1 10.7753 4.7105 8.7303 45 1 10.3130 6.5757 12.8140 46 1 11.1363 4.6392 4.4559 47 1 10.6568 4.6733 2.7420 48 1 9.9805 5.8640 3.8793 49 1 7.7258 5.0540 2.9634 50 1 8.5057 3.7609 2.0196 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674121608.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:30 Heat of formation + Delta-G solvation = -111.642028 kcal Electronic energy + Delta-G solvation = -29293.870500 eV Core-core repulsion = 25127.952647 eV Total energy + Delta-G solvation = -4165.917853 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.33666 -40.56100 -39.44495 -38.64110 -36.29941 -35.84827 -34.77241 -33.75317 -33.34198 -32.97124 -29.80392 -28.46149 -27.92098 -26.54716 -25.93216 -24.05883 -22.72061 -21.57817 -21.25180 -21.00407 -20.62139 -20.15140 -18.35478 -17.99715 -17.67061 -17.35622 -16.94549 -16.84795 -16.58164 -16.47137 -15.96079 -15.76083 -15.52133 -15.32444 -14.99657 -14.82393 -14.66579 -14.51575 -14.25606 -13.97814 -13.74672 -13.43942 -13.20289 -13.13880 -13.05075 -12.89101 -12.81176 -12.68547 -12.41034 -12.12699 -11.98665 -11.90136 -11.84563 -11.80854 -11.50636 -11.44748 -10.99759 -10.81901 -10.38563 -10.26737 -10.21860 -10.08453 -9.19098 -8.39739 -6.00076 1.18367 1.30605 1.36037 1.44685 1.55859 1.88343 1.99611 2.23957 2.59367 3.06769 3.15353 3.23072 3.63824 3.77816 3.82406 3.96951 4.04910 4.06111 4.16561 4.23260 4.25001 4.28864 4.32692 4.39215 4.44635 4.45364 4.46261 4.51501 4.57620 4.60465 4.81897 4.87916 4.97369 5.01986 5.02494 5.05019 5.14978 5.26453 5.44375 5.47216 5.55111 5.65089 5.69150 5.92236 6.04034 6.08894 6.26419 6.56720 6.62456 6.91107 7.23916 7.42862 8.01077 8.78115 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021956 B = 0.001849 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.967238 B =15136.544340 C =15944.213373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.178 4.178 3 C 0.084 3.916 4 O -0.400 6.400 5 C 0.046 3.954 6 C 0.507 3.493 7 O -0.577 6.577 8 N -0.707 5.707 9 C 0.154 3.846 10 H 0.070 0.930 11 C -0.113 4.113 12 C 0.065 3.935 13 N -0.526 5.526 14 C 0.048 3.952 15 C 0.452 3.548 16 O -0.605 6.605 17 N -0.595 5.595 18 C -0.326 4.326 19 H 0.054 0.946 20 C -0.016 4.016 21 N -0.936 5.936 22 Si 0.965 3.035 23 H -0.255 1.255 24 H -0.277 1.277 25 H -0.233 1.233 26 C 0.080 3.920 27 H 0.049 0.951 28 C -0.147 4.147 29 C -0.105 4.105 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.420 0.580 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.033 0.967 41 H 0.052 0.948 42 H 0.128 0.872 43 H 0.072 0.928 44 H 0.388 0.612 45 H 0.278 0.722 46 H 0.062 0.938 47 H 0.088 0.912 48 H 0.057 0.943 49 H 0.083 0.917 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.615 -8.514 -31.260 32.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.196 4.196 3 C 0.009 3.991 4 O -0.319 6.319 5 C -0.033 4.033 6 C 0.294 3.706 7 O -0.456 6.456 8 N -0.360 5.360 9 C 0.049 3.951 10 H 0.088 0.912 11 C -0.152 4.152 12 C -0.064 4.064 13 N -0.252 5.252 14 C -0.083 4.083 15 C 0.240 3.760 16 O -0.488 6.488 17 N -0.237 5.237 18 C -0.455 4.455 19 H 0.072 0.928 20 C -0.214 4.214 21 N -0.577 5.577 22 Si 0.785 3.215 23 H -0.179 1.179 24 H -0.202 1.202 25 H -0.157 1.157 26 C -0.028 4.028 27 H 0.067 0.933 28 C -0.204 4.204 29 C -0.143 4.143 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.257 0.743 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.146 0.854 43 H 0.090 0.910 44 H 0.224 0.776 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.107 0.893 48 H 0.076 0.924 49 H 0.102 0.898 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.460 -8.572 -30.582 32.226 hybrid contribution 0.707 -0.436 0.984 1.288 sum -4.753 -9.008 -29.598 31.301 Atomic orbital electron populations 1.24061 0.95112 1.03466 0.97911 1.22812 0.96316 0.98225 1.02249 1.21791 0.88305 0.96451 0.92554 1.88004 1.45565 1.36468 1.61870 1.22364 0.92574 0.89273 0.99097 1.20979 0.82857 0.83307 0.83471 1.90727 1.73288 1.29451 1.52097 1.45785 1.31128 1.17653 1.41448 1.20885 0.87601 1.00154 0.86497 0.91197 1.21804 0.97041 1.01659 0.94721 1.21918 0.92407 0.93084 0.98955 1.61494 1.09472 1.52405 1.01804 1.21924 0.96117 1.00160 0.90077 1.20941 0.86135 0.83861 0.85054 1.90531 1.21807 1.53028 1.83443 1.42043 1.15655 1.52963 1.13023 1.18990 1.00967 1.33416 0.92136 0.92784 1.26097 1.04171 0.97187 0.93939 1.69807 1.39689 1.43178 1.05055 0.85368 0.76917 0.80016 0.79237 1.17895 1.20184 1.15668 1.21737 0.95108 0.98515 0.87457 0.93278 1.21940 0.96214 0.99247 1.02976 1.21857 0.93487 1.00134 0.98819 0.87011 0.86890 0.87650 0.90983 0.90165 0.87476 0.86562 0.74261 0.91463 0.93166 0.94906 0.92927 0.85411 0.91044 0.77625 0.91235 0.91879 0.89289 0.92435 0.89826 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 14.31 67.78 0.97 -0.82 16 2 C -0.18 -2.52 9.89 25.64 0.25 -2.26 16 3 C 0.08 1.06 6.35 71.24 0.45 1.51 16 4 O -0.40 -8.15 9.86 -129.94 -1.28 -9.43 16 5 C 0.05 0.61 6.42 71.24 0.46 1.07 16 6 C 0.51 10.91 7.88 87.66 0.69 11.60 16 7 O -0.58 -19.27 16.16 16.01 0.26 -19.01 16 8 N -0.71 -11.41 5.08 -442.17 -2.25 -13.66 16 9 C 0.15 3.23 2.52 45.07 0.11 3.35 16 10 H 0.07 1.74 7.58 -2.39 -0.02 1.72 16 11 C -0.11 -3.21 5.67 30.65 0.17 -3.04 16 12 C 0.06 2.12 5.11 86.33 0.44 2.56 16 13 N -0.53 -15.69 4.12 -875.68 -3.61 -19.29 16 14 C 0.05 1.51 5.26 85.56 0.45 1.96 16 15 C 0.45 20.77 7.47 87.66 0.65 21.43 16 16 O -0.60 -33.88 14.42 -3.10 -0.04 -33.92 16 17 N -0.59 -28.47 5.09 -306.98 -1.56 -30.03 16 18 C -0.33 -19.35 10.16 84.04 0.85 -18.50 16 19 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 20 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 21 N -0.94 -57.15 13.96 21.66 0.30 -56.85 16 22 Si 0.96 39.25 27.73 68.60 1.90 41.15 16 23 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 24 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 25 H -0.23 -8.05 6.52 99.48 0.65 -7.40 16 26 C 0.08 1.60 2.44 44.94 0.11 1.71 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 C -0.15 -2.36 8.57 71.98 0.62 -1.74 16 29 C -0.10 -1.68 4.84 30.65 0.15 -1.53 16 30 H 0.11 0.86 7.90 -2.91 -0.02 0.83 16 31 H 0.11 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.11 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.07 0.65 7.86 -2.39 -0.02 0.63 16 34 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.42 3.48 8.61 -92.70 -0.80 2.69 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 39 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.05 2.19 6.35 -2.39 -0.02 2.17 16 42 H 0.13 3.23 5.55 -2.39 -0.01 3.21 16 43 H 0.07 1.97 8.05 -2.39 -0.02 1.95 16 44 H 0.39 15.40 5.76 -92.71 -0.53 14.87 16 45 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 46 H 0.06 0.98 6.44 -2.39 -0.02 0.96 16 47 H 0.09 0.94 8.13 -2.39 -0.02 0.93 16 48 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 49 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -89.06 405.02 0.13 -88.94 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: -0.44 Total: 35.23 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 6.85 Total: 16.89 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -7.12 Total: -119.84 kcal Atomic # 8 Polarization: -61.30 SS G_CDS: -1.07 Total: -62.37 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 1.90 Total: 41.15 kcal Total: -89.06 0.13 -88.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674121608.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.707 kcal (2) G-P(sol) polarization free energy of solvation -89.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds