Wall clock time and date at job start Sat Apr 11 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.47576 * 2 1 4 4 O 1.21281 * 119.99967 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00110 * 180.02562 * 3 2 1 6 6 C 1.46505 * 120.00009 * 179.97438 * 5 3 2 7 7 H 1.08996 * 109.47265 * 324.99903 * 6 5 3 8 8 C 1.52998 * 109.46933 * 84.99853 * 6 5 3 9 9 C 1.50696 * 109.47066 * 204.99720 * 6 5 3 10 10 O 1.21279 * 120.00278 * 335.63885 * 9 6 5 11 11 N 1.34778 * 120.00087 * 155.63772 * 9 6 5 12 12 C 1.47094 * 125.62867 * 354.55388 * 11 9 6 13 13 C 1.54461 * 107.29693 * 181.03128 * 12 11 9 14 14 C 1.54368 * 102.87949 * 21.49017 * 13 12 11 15 15 C 1.47567 * 125.63556 * 174.59280 * 11 9 6 16 16 C 1.52361 * 110.41118 * 207.65432 * 14 13 12 17 17 N 1.47327 * 108.46467 * 286.29382 * 16 14 13 18 18 C 1.36938 * 121.07247 * 130.84394 * 17 16 14 19 19 H 1.07992 * 120.00309 * 331.46797 * 18 17 16 20 20 C 1.38820 * 119.99427 * 151.46883 * 18 17 16 21 21 N 1.31619 * 119.99567 * 162.51289 * 20 18 17 22 22 Si 1.86793 * 120.00138 * 342.51280 * 20 18 17 23 23 H 1.48500 * 109.47205 * 90.38555 * 22 20 18 24 24 H 1.48502 * 109.47214 * 210.38446 * 22 20 18 25 25 H 1.48498 * 109.47130 * 330.38463 * 22 20 18 26 26 C 1.47165 * 117.84442 * 310.86490 * 17 16 14 27 27 C 1.53282 * 108.52338 * 51.30929 * 26 17 16 28 28 O 1.41870 * 110.76298 * 83.66926 * 14 13 12 29 29 H 1.08995 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46587 * 300.00141 * 1 2 3 31 31 H 1.09002 * 109.46600 * 59.99474 * 1 2 3 32 32 H 1.09009 * 109.46885 * 239.99859 * 2 1 3 33 33 H 1.08999 * 109.47277 * 120.00248 * 2 1 3 34 34 H 0.97001 * 120.00080 * 359.97438 * 5 3 2 35 35 H 1.09007 * 109.47364 * 176.62908 * 8 6 5 36 36 H 1.09001 * 109.47506 * 296.63105 * 8 6 5 37 37 H 1.09003 * 109.47363 * 56.63088 * 8 6 5 38 38 H 1.08998 * 109.87528 * 300.45413 * 12 11 9 39 39 H 1.09000 * 109.87896 * 61.60402 * 12 11 9 40 40 H 1.08998 * 110.73303 * 139.83355 * 13 12 11 41 41 H 1.08996 * 110.73525 * 262.96491 * 13 12 11 42 42 H 1.09005 * 110.37617 * 275.47811 * 15 11 9 43 43 H 1.09002 * 110.37562 * 37.82113 * 15 11 9 44 44 H 1.08996 * 109.64251 * 45.98557 * 16 14 13 45 45 H 1.09000 * 109.63940 * 166.60739 * 16 14 13 46 46 H 0.96998 * 119.99810 * 180.02562 * 21 20 18 47 47 H 1.08992 * 109.63319 * 291.59615 * 26 17 16 48 48 H 1.09007 * 109.78859 * 171.11009 * 26 17 16 49 49 H 1.08990 * 109.51452 * 186.99150 * 27 26 17 50 50 H 1.09005 * 109.50713 * 66.84141 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 8 1.2444 2.3426 -0.0005 5 7 3.3575 1.6669 -0.0005 6 6 3.8459 3.0481 -0.0011 7 1 3.1733 3.6712 -0.5905 8 6 3.8979 3.5713 1.4357 9 6 5.2272 3.0922 -0.6020 10 8 5.9275 2.1022 -0.5856 11 7 5.6844 4.2319 -1.1575 12 6 4.9058 5.4655 -1.3463 13 6 5.8297 6.4898 -2.0413 14 6 6.9038 5.5954 -2.6965 15 6 7.0483 4.4480 -1.6777 16 6 8.2169 6.3558 -2.8338 17 7 8.0759 7.3376 -3.9231 18 6 8.4407 8.6457 -3.7472 19 1 8.3953 9.0915 -2.7646 20 6 8.8689 9.3987 -4.8320 21 7 8.8900 10.7124 -4.7539 22 14 9.4152 8.5474 -6.4024 23 1 8.2489 8.3800 -7.3062 24 1 10.4503 9.3709 -7.0775 25 1 9.9807 7.2147 -6.0720 26 6 7.5298 6.8671 -5.2061 27 6 6.2207 6.1181 -4.9328 28 8 6.4539 5.1049 -3.9494 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9878 0.9296 -0.0005 35 1 4.3174 4.5773 1.4412 36 1 2.8900 3.5956 1.8503 37 1 4.5232 2.9136 2.0395 38 1 4.0379 5.2636 -1.9740 39 1 4.5844 5.8526 -0.3794 40 1 5.2822 7.0522 -2.7977 41 1 6.2777 7.1633 -1.3108 42 1 7.7205 4.7395 -0.8706 43 1 7.4138 3.5469 -2.1702 44 1 8.4399 6.8733 -1.9008 45 1 9.0208 5.6588 -3.0707 46 1 9.1889 11.2385 -5.5120 47 1 8.2431 6.1953 -5.6834 48 1 7.3353 7.7183 -5.8588 49 1 5.8662 5.6564 -5.8543 50 1 5.4711 6.8181 -4.5637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700560285.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:20 Heat of formation + Delta-G solvation = -81.138673 kcal Electronic energy + Delta-G solvation = -30984.430298 eV Core-core repulsion = 26819.835170 eV Total energy + Delta-G solvation = -4164.595128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.85545 -39.99905 -38.93399 -36.51468 -35.24792 -34.70111 -33.22675 -32.19704 -31.54031 -30.61569 -29.89983 -27.92535 -26.34838 -25.37905 -23.97155 -23.42360 -22.61132 -21.64227 -20.56018 -19.70358 -19.11613 -17.98899 -17.09019 -16.90050 -16.65064 -16.15855 -15.86944 -15.74323 -15.43886 -14.96230 -14.67758 -14.40914 -14.21979 -14.08142 -13.85392 -13.74935 -13.44661 -13.12270 -12.88237 -12.75360 -12.58876 -12.48828 -12.40535 -12.39067 -12.08309 -11.96009 -11.87682 -11.61757 -11.49947 -11.17774 -11.15268 -10.87865 -10.46531 -10.34544 -10.17969 -10.03967 -9.77615 -9.61072 -9.46257 -9.41497 -8.76330 -8.65190 -7.08016 -6.05746 -3.46534 2.25221 2.40301 2.56277 3.10621 3.22097 3.41005 3.43235 3.86796 4.17296 4.40841 4.41856 4.59694 4.60070 4.71801 4.73213 4.80852 4.82476 4.97908 5.03769 5.17240 5.21641 5.25281 5.31449 5.43692 5.45866 5.49014 5.53122 5.59348 5.62371 5.70369 5.73858 5.81310 5.86659 5.87835 5.97862 6.01259 6.04266 6.10614 6.19875 6.27853 6.38344 6.39242 6.61023 7.19289 7.32963 7.60262 7.77800 7.87868 7.93879 8.19426 8.76011 9.57383 9.93843 11.09711 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025624 B = 0.002439 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.465318 B =11478.237025 C =11635.761376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.514 3.486 4 O -0.541 6.541 5 N -0.717 5.717 6 C 0.129 3.871 7 H 0.109 0.891 8 C -0.155 4.155 9 C 0.529 3.471 10 O -0.542 6.542 11 N -0.605 5.605 12 C 0.099 3.901 13 C -0.145 4.145 14 C 0.092 3.908 15 C 0.122 3.878 16 C 0.134 3.866 17 N -0.605 5.605 18 C -0.261 4.261 19 H 0.088 0.912 20 C 0.025 3.975 21 N -0.907 5.907 22 Si 0.887 3.113 23 H -0.288 1.288 24 H -0.302 1.302 25 H -0.270 1.270 26 C 0.088 3.912 27 C 0.046 3.954 28 O -0.369 6.369 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.410 0.590 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.034 0.966 46 H 0.264 0.736 47 H 0.035 0.965 48 H 0.082 0.918 49 H 0.087 0.913 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.419 -17.895 10.102 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.301 3.699 4 O -0.417 6.417 5 N -0.371 5.371 6 C 0.020 3.980 7 H 0.126 0.874 8 C -0.214 4.214 9 C 0.316 3.684 10 O -0.420 6.420 11 N -0.338 5.338 12 C -0.024 4.024 13 C -0.183 4.183 14 C 0.050 3.950 15 C 0.000 4.000 16 C 0.007 3.993 17 N -0.330 5.330 18 C -0.389 4.389 19 H 0.106 0.894 20 C -0.174 4.174 21 N -0.550 5.550 22 Si 0.717 3.283 23 H -0.216 1.216 24 H -0.230 1.230 25 H -0.195 1.195 26 C -0.038 4.038 27 C -0.032 4.032 28 O -0.288 6.288 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.247 0.753 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.074 0.926 47 H 0.053 0.947 48 H 0.100 0.900 49 H 0.105 0.895 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.610 -17.823 10.039 24.030 hybrid contribution 0.762 -0.266 -1.095 1.360 sum -11.848 -18.089 8.944 23.400 Atomic orbital electron populations 1.21533 0.92838 1.01655 1.03435 1.21630 0.98717 0.93386 1.04609 1.20845 0.81615 0.92151 0.75277 1.90708 1.55218 1.46498 1.49299 1.45890 1.07622 1.07940 1.75677 1.20726 0.93204 0.85426 0.98622 0.87354 1.22061 1.03624 1.01756 0.93949 1.20138 0.88399 0.81921 0.77955 1.90686 1.58904 1.33551 1.58862 1.48440 1.13871 1.12509 1.59015 1.22229 0.95302 0.84343 1.00497 1.23057 0.97382 0.97066 1.00815 1.22349 0.95666 0.92677 0.84294 1.22144 0.83339 0.99126 0.95386 1.21314 0.92517 0.91774 0.93653 1.44342 1.73296 1.06606 1.08728 1.18858 1.39315 0.83689 0.97066 0.89427 1.25303 0.98648 0.95267 0.98196 1.69789 1.49461 1.04046 1.31672 0.86935 0.78130 0.79434 0.83760 1.21553 1.23028 1.19543 1.22047 0.93586 0.98124 0.89997 1.23152 0.98146 0.90890 0.90997 1.87676 1.86904 1.33240 1.21014 0.92008 0.91950 0.91902 0.88717 0.88752 0.75291 0.90845 0.90699 0.91579 0.91200 0.91043 0.88883 0.89192 0.89494 0.89359 0.90565 0.94797 0.92594 0.94713 0.89979 0.89485 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.20 37.16 0.34 -0.60 16 2 C -0.14 -0.94 6.42 -27.88 -0.18 -1.11 16 3 C 0.51 5.21 7.79 -10.99 -0.09 5.12 16 4 O -0.54 -7.33 15.64 5.56 0.09 -7.24 16 5 N -0.72 -7.06 5.05 -54.94 -0.28 -7.34 16 6 C 0.13 1.39 2.52 -69.08 -0.17 1.21 16 7 H 0.11 1.24 6.72 -51.93 -0.35 0.89 16 8 C -0.16 -1.41 9.47 37.16 0.35 -1.06 16 9 C 0.53 6.88 7.06 -10.99 -0.08 6.80 16 10 O -0.54 -8.40 16.23 5.56 0.09 -8.31 16 11 N -0.61 -7.81 3.33 -170.75 -0.57 -8.38 16 12 C 0.10 1.14 6.15 -2.95 -0.02 1.12 16 13 C -0.15 -2.01 5.88 -25.25 -0.15 -2.15 16 14 C 0.09 1.44 0.84 -89.64 -0.08 1.37 16 15 C 0.12 1.70 6.11 -2.87 -0.02 1.69 16 16 C 0.13 2.45 5.40 -3.92 -0.02 2.42 16 17 N -0.60 -13.44 2.75 -172.25 -0.47 -13.91 16 18 C -0.26 -6.85 10.11 -15.06 -0.15 -7.00 16 19 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 20 C 0.03 0.70 5.29 -17.43 -0.09 0.61 16 21 N -0.91 -26.74 13.97 55.49 0.78 -25.96 16 22 Si 0.89 21.69 24.28 -169.99 -4.13 17.56 16 23 H -0.29 -6.73 6.55 56.52 0.37 -6.36 16 24 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 25 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 26 C 0.09 1.83 4.35 -3.53 -0.02 1.81 16 27 C 0.05 0.79 6.79 37.30 0.25 1.04 16 28 O -0.37 -6.40 10.28 -35.22 -0.36 -6.76 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.06 0.51 8.10 -51.93 -0.42 0.08 16 32 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.41 3.66 7.78 -40.82 -0.32 3.34 16 35 H 0.07 0.60 7.53 -51.93 -0.39 0.21 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.80 7.93 -51.93 -0.41 0.38 16 39 H 0.07 0.67 7.53 -51.93 -0.39 0.28 16 40 H 0.09 1.39 6.10 -51.93 -0.32 1.07 16 41 H 0.09 1.22 7.83 -51.93 -0.41 0.81 16 42 H 0.09 1.07 7.99 -51.93 -0.42 0.66 16 43 H 0.09 1.34 8.01 -51.93 -0.42 0.92 16 44 H 0.08 1.32 7.72 -51.93 -0.40 0.92 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.04 0.74 6.86 -51.93 -0.36 0.39 16 48 H 0.08 1.83 4.64 -51.92 -0.24 1.59 16 49 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 50 H 0.06 0.93 6.25 -51.93 -0.32 0.60 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -32.91 387.55 -7.28 -40.19 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -8.16 Total: 3.04 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -0.11 Total: 11.28 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.54 Total: -55.60 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.18 Total: -22.32 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.13 Total: 17.56 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.91 -7.28 -40.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700560285.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.949 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds