Wall clock time and date at job start Sat Apr 11 2020 05:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.36840 * 2 1 4 4 C 1.54374 * 110.51428 * 237.57592 * 2 1 3 5 5 H 1.09000 * 110.32516 * 336.31664 * 4 2 1 6 6 N 1.46506 * 110.32056 * 98.42286 * 4 2 1 7 7 C 1.34780 * 119.99855 * 205.00197 * 6 4 2 8 8 O 1.21285 * 119.99890 * 359.97438 * 7 6 4 9 9 C 1.50699 * 120.00104 * 180.02562 * 7 6 4 10 10 C 1.53181 * 109.54250 * 299.82321 * 9 7 6 11 11 C 1.53100 * 109.15579 * 183.24008 * 10 9 7 12 12 O 1.42900 * 109.48850 * 57.47213 * 11 10 9 13 13 C 1.42905 * 114.10233 * 298.88873 * 12 11 10 14 14 C 1.53098 * 109.41260 * 61.15481 * 13 12 11 15 15 C 1.54259 * 105.06250 * 217.31336 * 4 2 1 16 16 C 1.54375 * 105.05940 * 0.02562 * 15 4 2 17 17 N 1.48558 * 104.59895 * 23.84993 * 16 15 4 18 18 C 1.46898 * 110.99989 * 200.96688 * 17 16 15 19 19 C 1.50706 * 109.46984 * 285.41304 * 18 17 16 20 20 O 1.21295 * 119.99863 * 359.97438 * 19 18 17 21 21 N 1.34773 * 120.00080 * 180.02562 * 19 18 17 22 22 C 1.37105 * 119.99873 * 180.02562 * 21 19 18 23 23 H 1.08000 * 119.99509 * 359.71860 * 22 21 19 24 24 C 1.38950 * 120.00048 * 179.72298 * 22 21 19 25 25 N 1.31413 * 119.99930 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99918 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47151 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47086 * 119.99941 * 26 24 22 29 29 H 1.48500 * 109.46879 * 239.99997 * 26 24 22 30 30 H 1.09005 * 109.47116 * 299.10646 * 1 2 3 31 31 H 1.08994 * 109.46710 * 59.10473 * 1 2 3 32 32 H 1.09004 * 109.46675 * 179.10966 * 1 2 3 33 33 H 0.96996 * 120.00487 * 25.00321 * 6 4 2 34 34 H 1.09002 * 109.54088 * 59.99461 * 9 7 6 35 35 H 1.08995 * 109.51946 * 303.05467 * 10 9 7 36 36 H 1.09002 * 109.52303 * 63.24598 * 10 9 7 37 37 H 1.08996 * 109.40906 * 297.49184 * 11 10 9 38 38 H 1.09002 * 109.49122 * 177.50910 * 11 10 9 39 39 H 1.09000 * 109.47884 * 301.17689 * 13 12 11 40 40 H 1.08997 * 109.49177 * 181.14157 * 13 12 11 41 41 H 1.09000 * 109.52355 * 182.48966 * 14 13 12 42 42 H 1.09001 * 109.52237 * 62.29671 * 14 13 12 43 43 H 1.09011 * 110.32043 * 118.89643 * 15 4 2 44 44 H 1.08998 * 110.33153 * 241.00248 * 15 4 2 45 45 H 1.09001 * 110.40755 * 265.06376 * 16 15 4 46 46 H 1.09005 * 110.41358 * 142.62964 * 16 15 4 47 47 H 1.09004 * 109.47320 * 165.41709 * 18 17 16 48 48 H 1.09001 * 109.47291 * 45.41005 * 18 17 16 49 49 H 0.96996 * 119.99858 * 359.72084 * 21 19 18 50 50 H 0.96999 * 119.99993 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0710 -0.7752 -1.2204 5 1 1.3270 -1.4878 -1.5765 6 7 2.4378 0.1543 -2.2918 7 6 2.4467 -0.2639 -3.5731 8 8 2.1515 -1.4099 -3.8390 9 6 2.8245 0.6920 -4.6751 10 6 1.8513 1.8748 -4.6835 11 6 2.1932 2.7985 -5.8556 12 8 2.1361 2.0594 -7.0773 13 6 3.0592 0.9706 -7.1444 14 6 2.7508 -0.0277 -6.0253 15 6 3.3211 -1.5161 -0.7028 16 6 3.4298 -1.1267 0.7871 17 7 2.0478 -0.7456 1.1764 18 6 2.0536 0.1023 2.3759 19 6 2.3470 -0.7439 3.5879 20 8 2.5326 -1.9363 3.4645 21 7 2.4023 -0.1762 4.8089 22 6 2.6698 -0.9460 5.9114 23 1 2.8317 -2.0082 5.8019 24 6 2.7325 -0.3597 7.1696 25 7 2.5359 0.9328 7.3027 26 14 3.0963 -1.4087 8.6718 27 1 3.2765 -2.8230 8.2561 28 1 4.3375 -0.9226 9.3263 29 1 1.9634 -1.3147 9.6273 30 1 -0.3633 0.4999 0.8979 31 1 -0.3632 0.5277 -0.8818 32 1 -0.3633 -1.0276 -0.0160 33 1 2.6742 1.0706 -2.0792 34 1 3.8388 1.0556 -4.5106 35 1 0.8316 1.5067 -4.7968 36 1 1.9388 2.4252 -3.7467 37 1 3.1976 3.1993 -5.7199 38 1 1.4765 3.6189 -5.8932 39 1 4.0751 1.3474 -7.0254 40 1 2.9664 0.4740 -8.1102 41 1 3.4810 -0.8366 -6.0473 42 1 1.7498 -0.4353 -6.1665 43 1 3.1913 -2.5938 -0.8036 44 1 4.2073 -1.1897 -1.2470 45 1 4.1065 -0.2811 0.9105 46 1 3.7706 -1.9767 1.3783 47 1 1.0785 0.5759 2.4909 48 1 2.8207 0.8700 2.2745 49 1 2.2572 0.7779 4.9071 50 1 2.5793 1.3421 8.1811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707239867.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:45 Heat of formation + Delta-G solvation = -120.299412 kcal Electronic energy + Delta-G solvation = -29897.297071 eV Core-core repulsion = 25731.003806 eV Total energy + Delta-G solvation = -4166.293265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.78665 -39.59503 -38.63872 -37.60703 -34.61499 -34.12980 -33.79269 -31.62893 -31.44419 -31.23422 -30.71919 -26.98853 -26.14633 -24.97823 -24.15405 -23.95332 -21.95679 -20.92507 -20.57201 -19.95828 -19.15399 -17.89914 -17.62797 -16.77824 -16.40761 -16.34646 -15.91413 -15.56319 -15.20970 -15.08149 -14.77855 -14.53893 -14.38255 -14.18990 -13.93026 -13.78772 -13.58453 -13.28690 -13.20401 -12.84082 -12.47440 -12.23549 -11.99419 -11.91772 -11.79317 -11.70168 -11.50672 -11.38191 -11.29072 -11.20512 -11.14244 -10.92914 -10.83708 -10.64477 -10.34805 -10.28167 -10.22823 -9.79697 -9.51018 -9.23397 -8.56186 -8.06078 -7.95630 -6.42272 -3.82848 2.37035 2.83260 3.15786 3.26381 3.33759 3.43154 3.89615 3.98178 4.13300 4.20201 4.26901 4.30952 4.41537 4.51202 4.67892 4.72359 4.81170 4.96402 4.97626 5.07200 5.12006 5.14669 5.21179 5.21857 5.24558 5.32467 5.34471 5.42720 5.52417 5.60099 5.62791 5.65152 5.75725 5.83769 5.84968 5.87201 5.96974 6.10178 6.20112 6.28419 6.33934 6.38447 6.72570 7.06626 7.13769 7.25311 7.55101 7.97957 8.06203 8.61658 9.18261 9.54254 10.06391 10.75673 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030724 B = 0.001885 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.128673 B =14851.895105 C =15200.229996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.052 3.948 3 H 0.052 0.948 4 C 0.145 3.855 5 H 0.102 0.898 6 N -0.722 5.722 7 C 0.519 3.481 8 O -0.534 6.534 9 C -0.110 4.110 10 C -0.148 4.148 11 C 0.062 3.938 12 O -0.382 6.382 13 C 0.060 3.940 14 C -0.136 4.136 15 C -0.132 4.132 16 C 0.038 3.962 17 N -0.476 5.476 18 C 0.035 3.965 19 C 0.446 3.554 20 O -0.575 6.575 21 N -0.567 5.567 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.398 0.602 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.038 0.962 46 H 0.099 0.901 47 H 0.089 0.911 48 H 0.050 0.950 49 H 0.391 0.609 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 7.621 -25.366 26.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.058 4.058 3 H 0.070 0.930 4 C 0.040 3.960 5 H 0.120 0.880 6 N -0.374 5.374 7 C 0.305 3.695 8 O -0.410 6.410 9 C -0.131 4.131 10 C -0.186 4.186 11 C -0.015 4.015 12 O -0.301 6.301 13 C -0.016 4.016 14 C -0.174 4.174 15 C -0.171 4.171 16 C -0.090 4.090 17 N -0.200 5.200 18 C -0.097 4.097 19 C 0.231 3.769 20 O -0.458 6.458 21 N -0.204 5.204 22 C -0.426 4.426 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.545 5.545 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.232 0.768 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.116 0.884 39 H 0.069 0.931 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.056 0.944 46 H 0.117 0.883 47 H 0.107 0.893 48 H 0.068 0.932 49 H 0.224 0.776 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.175 5.655 -25.464 26.085 hybrid contribution 0.965 1.377 1.320 2.138 sum 1.141 7.032 -24.144 25.173 Atomic orbital electron populations 1.21710 0.93186 1.03042 1.01392 1.22875 0.96797 0.95602 0.90477 0.92965 1.21779 0.97245 0.91218 0.85755 0.87985 1.46168 1.70050 1.14876 1.06262 1.20516 0.76971 0.88625 0.83389 1.90723 1.47642 1.19457 1.83181 1.21396 1.01234 0.95850 0.94664 1.22212 1.00224 0.96086 1.00053 1.22573 1.01538 0.93665 0.83678 1.87959 1.60701 1.44489 1.36963 1.22645 0.92383 0.87303 0.99313 1.22026 1.04612 0.98365 0.92401 1.22738 0.97231 1.01595 0.95552 1.23155 0.89508 1.01377 0.94914 1.65111 1.18710 1.35574 1.00601 1.22074 1.01876 0.94521 0.91182 1.19673 0.84586 0.88732 0.83907 1.90521 1.54412 1.15336 1.85561 1.41863 1.62477 1.10842 1.05185 1.19747 1.44652 0.94019 0.84201 0.87873 1.25255 0.97545 0.96073 0.99168 1.69619 1.50148 1.09795 1.24903 0.85807 0.77859 0.79964 0.80761 1.19218 1.20809 1.20760 0.92113 0.92576 0.91367 0.76808 0.88439 0.90217 0.90212 0.92899 0.88399 0.93053 0.88413 0.90029 0.90017 0.90233 0.91271 0.94378 0.88321 0.89271 0.93224 0.77579 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.34 37.16 0.35 -1.19 16 2 C 0.05 0.62 2.58 -66.06 -0.17 0.45 16 3 H 0.05 0.54 7.61 -51.92 -0.40 0.15 16 4 C 0.14 1.69 2.96 -66.55 -0.20 1.50 16 5 H 0.10 1.39 7.26 -51.93 -0.38 1.01 16 6 N -0.72 -6.45 4.93 -52.46 -0.26 -6.71 16 7 C 0.52 5.27 7.16 -10.98 -0.08 5.19 16 8 O -0.53 -7.65 15.62 5.55 0.09 -7.57 16 9 C -0.11 -0.77 2.61 -91.59 -0.24 -1.01 16 10 C -0.15 -0.84 5.30 -26.59 -0.14 -0.98 16 11 C 0.06 0.34 6.84 37.21 0.25 0.60 16 12 O -0.38 -3.06 10.77 -35.23 -0.38 -3.44 16 13 C 0.06 0.38 6.84 37.21 0.25 0.63 16 14 C -0.14 -1.03 4.74 -26.59 -0.13 -1.16 16 15 C -0.13 -1.69 6.79 -25.35 -0.17 -1.87 16 16 C 0.04 0.59 5.92 -2.19 -0.01 0.57 16 17 N -0.48 -7.65 4.66 -223.54 -1.04 -8.69 16 18 C 0.04 0.61 5.26 -4.97 -0.03 0.58 16 19 C 0.45 10.42 7.63 -10.98 -0.08 10.33 16 20 O -0.58 -15.50 14.80 5.54 0.08 -15.42 16 21 N -0.57 -14.23 5.29 -10.96 -0.06 -14.29 16 22 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 23 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 24 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 25 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 26 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 H 0.06 0.70 7.30 -51.93 -0.38 0.32 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 33 H 0.40 2.53 7.88 -40.82 -0.32 2.21 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.32 7.68 -51.93 -0.40 -0.08 16 37 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.76 8.03 -51.93 -0.42 0.35 16 43 H 0.08 1.10 8.14 -51.92 -0.42 0.67 16 44 H 0.07 0.80 7.95 -51.93 -0.41 0.39 16 45 H 0.04 0.55 7.75 -51.93 -0.40 0.14 16 46 H 0.10 1.82 7.24 -51.93 -0.38 1.44 16 47 H 0.09 1.40 7.17 -51.93 -0.37 1.03 16 48 H 0.05 0.77 7.77 -51.93 -0.40 0.37 16 49 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 50 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 397.54 15.07 5.99 5.99 Total: -1.00 -33.70 397.54 -8.82 -42.53 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -8.31 Total: 9.55 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -0.63 Total: 5.74 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.63 Total: -53.39 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.21 Total: -26.42 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.70 -8.82 -42.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707239867.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.772 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds