Wall clock time and date at job start Sat Apr 11 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.36840 * 2 1 4 4 C 1.54374 * 110.51428 * 237.57592 * 2 1 3 5 5 H 1.09000 * 110.32516 * 336.31664 * 4 2 1 6 6 N 1.46506 * 110.32056 * 98.42286 * 4 2 1 7 7 C 1.34780 * 119.99855 * 205.00197 * 6 4 2 8 8 O 1.21285 * 119.99890 * 359.97438 * 7 6 4 9 9 C 1.50699 * 120.00104 * 180.02562 * 7 6 4 10 10 C 1.53181 * 109.54250 * 299.82321 * 9 7 6 11 11 C 1.53100 * 109.15579 * 183.24008 * 10 9 7 12 12 O 1.42900 * 109.48850 * 57.47213 * 11 10 9 13 13 C 1.42905 * 114.10233 * 298.88873 * 12 11 10 14 14 C 1.53098 * 109.41260 * 61.15481 * 13 12 11 15 15 C 1.54259 * 105.06250 * 217.31336 * 4 2 1 16 16 C 1.54375 * 105.05940 * 0.02562 * 15 4 2 17 17 N 1.48558 * 104.59895 * 23.84993 * 16 15 4 18 18 C 1.46898 * 110.99989 * 200.96688 * 17 16 15 19 19 C 1.50706 * 109.46984 * 285.41304 * 18 17 16 20 20 O 1.21295 * 119.99863 * 359.97438 * 19 18 17 21 21 N 1.34773 * 120.00080 * 180.02562 * 19 18 17 22 22 C 1.37105 * 119.99873 * 180.02562 * 21 19 18 23 23 H 1.08000 * 119.99509 * 359.71860 * 22 21 19 24 24 C 1.38950 * 120.00048 * 179.72298 * 22 21 19 25 25 N 1.31413 * 119.99930 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99918 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47151 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47086 * 119.99941 * 26 24 22 29 29 H 1.48500 * 109.46879 * 239.99997 * 26 24 22 30 30 H 1.09005 * 109.47116 * 299.10646 * 1 2 3 31 31 H 1.08994 * 109.46710 * 59.10473 * 1 2 3 32 32 H 1.09004 * 109.46675 * 179.10966 * 1 2 3 33 33 H 0.96996 * 120.00487 * 25.00321 * 6 4 2 34 34 H 1.09002 * 109.54088 * 59.99461 * 9 7 6 35 35 H 1.08995 * 109.51946 * 303.05467 * 10 9 7 36 36 H 1.09002 * 109.52303 * 63.24598 * 10 9 7 37 37 H 1.08996 * 109.40906 * 297.49184 * 11 10 9 38 38 H 1.09002 * 109.49122 * 177.50910 * 11 10 9 39 39 H 1.09000 * 109.47884 * 301.17689 * 13 12 11 40 40 H 1.08997 * 109.49177 * 181.14157 * 13 12 11 41 41 H 1.09000 * 109.52355 * 182.48966 * 14 13 12 42 42 H 1.09001 * 109.52237 * 62.29671 * 14 13 12 43 43 H 1.09011 * 110.32043 * 118.89643 * 15 4 2 44 44 H 1.08998 * 110.33153 * 241.00248 * 15 4 2 45 45 H 1.09001 * 110.40755 * 265.06376 * 16 15 4 46 46 H 1.09005 * 110.41358 * 142.62964 * 16 15 4 47 47 H 1.09004 * 109.47320 * 165.41709 * 18 17 16 48 48 H 1.09001 * 109.47291 * 45.41005 * 18 17 16 49 49 H 0.96996 * 119.99858 * 359.72084 * 21 19 18 50 50 H 0.96999 * 119.99993 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0710 -0.7752 -1.2204 5 1 1.3270 -1.4878 -1.5765 6 7 2.4378 0.1543 -2.2918 7 6 2.4467 -0.2639 -3.5731 8 8 2.1515 -1.4099 -3.8390 9 6 2.8245 0.6920 -4.6751 10 6 1.8513 1.8748 -4.6835 11 6 2.1932 2.7985 -5.8556 12 8 2.1361 2.0594 -7.0773 13 6 3.0592 0.9706 -7.1444 14 6 2.7508 -0.0277 -6.0253 15 6 3.3211 -1.5161 -0.7028 16 6 3.4298 -1.1267 0.7871 17 7 2.0478 -0.7456 1.1764 18 6 2.0536 0.1023 2.3759 19 6 2.3470 -0.7439 3.5879 20 8 2.5326 -1.9363 3.4645 21 7 2.4023 -0.1762 4.8089 22 6 2.6698 -0.9460 5.9114 23 1 2.8317 -2.0082 5.8019 24 6 2.7325 -0.3597 7.1696 25 7 2.5359 0.9328 7.3027 26 14 3.0963 -1.4087 8.6718 27 1 3.2765 -2.8230 8.2561 28 1 4.3375 -0.9226 9.3263 29 1 1.9634 -1.3147 9.6273 30 1 -0.3633 0.4999 0.8979 31 1 -0.3632 0.5277 -0.8818 32 1 -0.3633 -1.0276 -0.0160 33 1 2.6742 1.0706 -2.0792 34 1 3.8388 1.0556 -4.5106 35 1 0.8316 1.5067 -4.7968 36 1 1.9388 2.4252 -3.7467 37 1 3.1976 3.1993 -5.7199 38 1 1.4765 3.6189 -5.8932 39 1 4.0751 1.3474 -7.0254 40 1 2.9664 0.4740 -8.1102 41 1 3.4810 -0.8366 -6.0473 42 1 1.7498 -0.4353 -6.1665 43 1 3.1913 -2.5938 -0.8036 44 1 4.2073 -1.1897 -1.2470 45 1 4.1065 -0.2811 0.9105 46 1 3.7706 -1.9767 1.3783 47 1 1.0785 0.5759 2.4909 48 1 2.8207 0.8700 2.2745 49 1 2.2572 0.7779 4.9071 50 1 2.5793 1.3421 8.1811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707239867.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:44 Heat of formation + Delta-G solvation = -146.656625 kcal Electronic energy + Delta-G solvation = -29898.440006 eV Core-core repulsion = 25731.003806 eV Total energy + Delta-G solvation = -4167.436200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.59959 -40.64545 -39.72733 -39.00220 -36.02560 -35.44974 -34.70354 -33.29303 -32.44145 -32.18901 -31.77092 -28.25966 -27.22313 -25.88203 -25.82771 -24.43945 -22.84867 -21.86677 -21.56609 -20.95057 -20.63345 -19.86445 -18.39089 -17.80691 -17.55455 -16.96060 -16.90359 -16.57164 -16.49485 -16.25494 -15.83638 -15.76002 -15.63768 -15.22424 -15.21759 -14.85327 -14.55651 -14.44859 -14.07127 -13.88811 -13.70041 -13.47208 -13.26624 -12.98149 -12.89316 -12.81900 -12.53841 -12.46670 -12.37894 -12.35468 -12.28355 -12.12873 -12.07940 -11.73420 -11.66678 -11.48754 -11.43547 -10.94529 -10.43888 -10.34421 -10.10949 -9.99575 -9.39420 -8.46390 -5.94438 1.36026 1.41337 1.55136 1.58572 2.01645 2.07212 2.29462 2.82952 3.01573 3.20259 3.33983 3.40535 3.56478 3.72671 3.74078 3.81963 4.01791 4.03430 4.13453 4.21782 4.26568 4.31302 4.34042 4.40774 4.41781 4.53424 4.54301 4.62805 4.68622 4.70504 4.80241 4.81929 4.84597 4.87576 5.00280 5.01630 5.10623 5.10665 5.13181 5.27307 5.33581 5.41286 5.42556 5.83558 5.94390 6.09113 6.29734 6.52039 6.62079 7.14516 7.23165 7.58111 8.14864 8.71234 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030724 B = 0.001885 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.128673 B =14851.895105 C =15200.229996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.084 0.916 4 C 0.155 3.845 5 H 0.080 0.920 6 N -0.706 5.706 7 C 0.518 3.482 8 O -0.582 6.582 9 C -0.103 4.103 10 C -0.142 4.142 11 C 0.058 3.942 12 O -0.407 6.407 13 C 0.063 3.937 14 C -0.135 4.135 15 C -0.123 4.123 16 C 0.041 3.959 17 N -0.504 5.504 18 C 0.050 3.950 19 C 0.442 3.558 20 O -0.617 6.617 21 N -0.575 5.575 22 C -0.330 4.330 23 H 0.076 0.924 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.991 3.009 27 H -0.276 1.276 28 H -0.270 1.270 29 H -0.271 1.271 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.416 0.584 34 H 0.125 0.875 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.086 0.914 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.111 0.889 48 H 0.077 0.923 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.273 10.424 -26.016 28.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.049 4.049 3 H 0.102 0.898 4 C 0.049 3.951 5 H 0.098 0.902 6 N -0.358 5.358 7 C 0.306 3.694 8 O -0.461 6.461 9 C -0.124 4.124 10 C -0.180 4.180 11 C -0.018 4.018 12 O -0.326 6.326 13 C -0.014 4.014 14 C -0.174 4.174 15 C -0.163 4.163 16 C -0.087 4.087 17 N -0.229 5.229 18 C -0.082 4.082 19 C 0.229 3.771 20 O -0.503 6.503 21 N -0.213 5.213 22 C -0.460 4.460 23 H 0.094 0.906 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.815 3.185 27 H -0.200 1.200 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.253 0.747 34 H 0.143 0.857 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.104 0.896 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.129 0.871 48 H 0.095 0.905 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.717 8.526 -26.122 27.487 hybrid contribution 0.779 0.470 1.472 1.731 sum 1.496 8.996 -24.649 26.282 Atomic orbital electron populations 1.21718 0.92668 1.02191 1.02597 1.22907 0.97069 0.96543 0.88386 0.89824 1.21457 0.95988 0.91342 0.86359 0.90180 1.45962 1.69353 1.15250 1.05271 1.21122 0.75808 0.88419 0.84092 1.90714 1.49772 1.21760 1.83866 1.21423 1.02995 0.95342 0.92648 1.22210 0.98679 0.95608 1.01548 1.22760 1.03009 0.93531 0.82546 1.87932 1.61377 1.44933 1.38337 1.22685 0.93024 0.86738 0.98917 1.21990 1.02928 0.98771 0.93684 1.22641 0.98622 1.00769 0.94237 1.23022 0.89635 1.00415 0.95586 1.65003 1.19278 1.36949 1.01706 1.21911 1.03767 0.93710 0.88782 1.20801 0.82424 0.88850 0.85014 1.90498 1.55727 1.17689 1.86403 1.41918 1.63113 1.10875 1.05405 1.19658 1.46964 0.93390 0.85993 0.90585 1.25992 0.96763 0.97312 1.01194 1.69668 1.49885 1.10624 1.25912 0.84904 0.78294 0.77917 0.77420 1.20040 1.19544 1.19632 0.92000 0.90156 0.93380 0.74671 0.85726 0.92045 0.87676 0.91017 0.87375 0.91160 0.88008 0.90610 0.92612 0.92089 0.89577 0.92816 0.92463 0.87094 0.90536 0.76978 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.34 71.98 0.67 -2.09 16 2 C 0.06 1.28 2.58 45.06 0.12 1.39 16 3 H 0.08 1.34 7.61 -2.38 -0.02 1.32 16 4 C 0.15 3.40 2.96 45.88 0.14 3.53 16 5 H 0.08 2.18 7.26 -2.39 -0.02 2.16 16 6 N -0.71 -10.73 4.93 -438.29 -2.16 -12.89 16 7 C 0.52 9.71 7.16 87.66 0.63 10.34 16 8 O -0.58 -16.78 15.62 -3.05 -0.05 -16.83 16 9 C -0.10 -1.19 2.61 -11.42 -0.03 -1.22 16 10 C -0.14 -1.20 5.30 30.69 0.16 -1.04 16 11 C 0.06 0.46 6.84 72.02 0.49 0.96 16 12 O -0.41 -5.75 10.77 -148.98 -1.60 -7.35 16 13 C 0.06 0.69 6.84 72.01 0.49 1.18 16 14 C -0.14 -1.95 4.74 30.69 0.15 -1.80 16 15 C -0.12 -3.11 6.79 31.49 0.21 -2.90 16 16 C 0.04 1.26 5.92 86.45 0.51 1.77 16 17 N -0.50 -15.75 4.66 -861.15 -4.01 -19.76 16 18 C 0.05 1.64 5.26 85.56 0.45 2.09 16 19 C 0.44 20.89 7.63 87.66 0.67 21.56 16 20 O -0.62 -34.55 14.80 -3.08 -0.05 -34.60 16 21 N -0.58 -29.25 5.29 -306.97 -1.62 -30.87 16 22 C -0.33 -18.78 9.68 84.04 0.81 -17.96 16 23 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 24 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 25 N -0.92 -49.16 13.05 21.66 0.28 -48.88 16 26 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 29 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 30 H 0.06 1.27 7.30 -2.38 -0.02 1.25 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.18 8.12 -2.38 -0.02 1.16 16 33 H 0.42 3.46 7.88 -92.71 -0.73 2.73 16 34 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.10 0.36 7.68 -2.39 -0.02 0.34 16 37 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 1.08 8.03 -2.39 -0.02 1.06 16 43 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.09 1.86 7.95 -2.39 -0.02 1.84 16 45 H 0.05 1.44 7.75 -2.39 -0.02 1.43 16 46 H 0.06 2.21 7.24 -2.38 -0.02 2.19 16 47 H 0.11 3.20 7.17 -2.39 -0.02 3.18 16 48 H 0.08 2.14 7.77 -2.39 -0.02 2.12 16 49 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 50 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -76.62 397.54 -1.75 -78.37 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: -0.51 Total: 32.17 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 5.94 Total: 15.58 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -7.51 Total: -112.40 kcal Atomic # 8 Polarization: -57.08 SS G_CDS: -1.70 Total: -58.78 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -76.62 -1.75 -78.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707239867.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.289 kcal (2) G-P(sol) polarization free energy of solvation -76.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds